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Aspera and FTP links not properly generated for some libraries. #45

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pre-mRNA opened this issue Apr 24, 2024 · 0 comments
Open

Aspera and FTP links not properly generated for some libraries. #45

pre-mRNA opened this issue Apr 24, 2024 · 0 comments

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@pre-mRNA
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Thanks for writing such a useful tool. I think currently is is broken for specific libraries,

e.g., for SRR26622970, I get the following commands for FTP and Aspera FASTQ download:

curl -L ftp:// -o SRR26622970_GSM7875077_mouse11_F_hippocampus_Mus_musculus_RNA-Seq

ascp -QT -l 300m -P33001 -i $HOME/.aspera/connect/etc/asperaweb_id_dsa.openssh . && mv SRR26622970_GSM7875077_mouse11_F_hippocampus_Mus_musculus_RNA-Seq

Specifically, the path to the actual fastq file is missing.

Thanks a lot!

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