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Metadata warnings when loading sample spreadsheet into i2b2 #128

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arpost opened this issue Sep 14, 2016 · 0 comments
Open

Metadata warnings when loading sample spreadsheet into i2b2 #128

arpost opened this issue Sep 14, 2016 · 0 comments
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@arpost
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arpost commented Sep 14, 2016 

WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@26811028[propId=PatientDetails,propertyName=vitalStatus,value=<null>,conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@20ef6db8[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@6298f7f2[val=AMBULATORYSURGERY],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@157c331f[propId=PatientDetails,propertyName=dateOfDeath,value=<null>,conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@3e795e7d[propId=PatientDetails,propertyName=ethnicity,value=org.protempa.proposition.value.NominalValue@65a066a7[val=NotHispanicOrLatino],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@18beb8f3[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@6c97c17b[val=HISTORY],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@156e2a3f[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@38527df7[val=LONGTERMCARE],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@5546332e[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@708ace4[val=NEWBORN],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@63d341e8[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@484525a0[val=TECVISIT],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@2c7ea0c5[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@6e534622[val=TREATRMOP],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@17f69601[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@767fd97a[val=RECONSTRUCTEDPT],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@2fde37f8[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@5b480677[val=OBSERVATION],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@78adc581[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@701177e7[val=EMERGENCY],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@2eaeefea[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@354e3ff6[val=REHABRECURRING],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@23d97513[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@588c90c0[val=TRANSPLANTRECURRING],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@184e584[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@4571dbcd[val=SPECIMEN],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@2de84f9d[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@115ec070[val=DescriptionMissing],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@37d0af1a[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@7cb4b59e[val=INPATIENT],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@13cf9932[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@7475867b[val=VIPRECURRING],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@466f4f90[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@1f2e1a86[val=CLINICRECURRING],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@70471658[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@28590075[val=ERTEMP],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@1476d921[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@7be30b03[val=INSTITUTIONAL],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@335e27f1[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@53e4d347[val=IPCANCEL],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@71f9a7cb[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@122101e4[val=DAYREHAB],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@5082cdfe[propId=PatientDetails,propertyName=ethnicity,value=org.protempa.proposition.value.NominalValue@25094242[val=Unknown],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@19727ed7[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@346623c[val=RECURRINGOP],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@456da297[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@2a19e32a[val=HOSPICE],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@2097a478[propId=PatientDetails,propertyName=ethnicity,value=org.protempa.proposition.value.NominalValue@107075d4[val=HispanicOrLatino],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@38210457[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@5dc4a0ca[val=INFUSIONRECURRING],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@40ed7b6e[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@53206872[val=UNIDENTIFIEDACCT],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@6393cdfd[propId=PatientDetails,propertyName=ethnicity,value=org.protempa.proposition.value.NominalValue@1b29f3b5[val=NotRecorded],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@30b4cdb5[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@60074029[val=PSYCHPARTHOSP],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:13 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@1d0695f1[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@49e669bf[val=INFUSIONSINGLEVISIT],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:14 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@5f29cc53[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@575d997[val=BLOODDONATION],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:14 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@2c757dd5[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@56244275[val=GRANT],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:14 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@47fe47b6[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@6c6c97bf[val=HLAQC],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:14 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@6b70d432[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@1fb314c3[val=SINGLEVISITOP],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:14 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@2ac52374[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@221c88fc[val=NONPTMISCELLANEOUS],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:14 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@4fa009c9[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@483209f2[val=PREADMITIN],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:14 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@4b6f5d03[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@d7277fa[val=MEDICALRECORDS],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
Sep 14, 2016 5:45:14 PM edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler doInsert
WARNING: No metadata for concept edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId@4253c9dc[propId=Encounter,propertyName=type,value=org.protempa.proposition.value.NominalValue@1af625fd[val=INSTITUTIONALBODY],conceptCode=<null>,metadata=edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata@34eecb7c]; this data will not be loaded
@arpost arpost added the bug label Sep 14, 2016
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