diff --git a/docs/figs/fig_titanic.png b/docs/figs/fig_titanic.png index a1332ed..1273d11 100644 Binary files a/docs/figs/fig_titanic.png and b/docs/figs/fig_titanic.png differ diff --git a/docs/figs/titanic_dag.png b/docs/figs/titanic_dag.png index 162e908..1273d11 100644 Binary files a/docs/figs/titanic_dag.png and b/docs/figs/titanic_dag.png differ diff --git a/docs/figs/titanic_dag_chi2.png b/docs/figs/titanic_dag_chi2.png index ea4565f..6488ef0 100644 Binary files a/docs/figs/titanic_dag_chi2.png and b/docs/figs/titanic_dag_chi2.png differ diff --git a/docs/pages/doctrees/UseCases.doctree b/docs/pages/doctrees/UseCases.doctree index 096b0e3..fbdcc83 100644 Binary files a/docs/pages/doctrees/UseCases.doctree and b/docs/pages/doctrees/UseCases.doctree differ diff --git a/docs/pages/doctrees/environment.pickle b/docs/pages/doctrees/environment.pickle index f26c7ba..24193b1 100644 Binary files a/docs/pages/doctrees/environment.pickle and b/docs/pages/doctrees/environment.pickle differ diff --git a/docs/pages/html/UseCases.html b/docs/pages/html/UseCases.html index 4ec9e72..a0ba5e6 100644 --- a/docs/pages/html/UseCases.html +++ b/docs/pages/html/UseCases.html @@ -210,7 +210,7 @@

Use Case Titanic# Compute edge strength with the chi_square test statistic model = bn.independence_test(model, dfnum, test='chi_square', prune=True) # Plot -bn.plot(model, interactive=False, pos=G['pos']) +G = bn.plot(model, interactive=False, pos=G['pos'], edge_labels='pvalue') # Parameter learning model = bn.parameter_learning.fit(model, dfnum) @@ -220,7 +220,8 @@

Use Case TitanicLearned structure on the Titanic dataset.

fig_t1

-

fig_t2

+ +

fig_t2

diff --git a/docs/pages/html/_images/fig_titanic.png b/docs/pages/html/_images/fig_titanic.png index a1332ed..1273d11 100644 Binary files a/docs/pages/html/_images/fig_titanic.png and b/docs/pages/html/_images/fig_titanic.png differ diff --git a/docs/pages/html/_images/titanic_dag.png b/docs/pages/html/_images/titanic_dag.png index 162e908..1273d11 100644 Binary files a/docs/pages/html/_images/titanic_dag.png and b/docs/pages/html/_images/titanic_dag.png differ diff --git a/docs/pages/html/_images/titanic_dag_chi2.png b/docs/pages/html/_images/titanic_dag_chi2.png index ea4565f..6488ef0 100644 Binary files a/docs/pages/html/_images/titanic_dag_chi2.png and b/docs/pages/html/_images/titanic_dag_chi2.png differ diff --git a/docs/pages/html/_sources/UseCases.rst.txt b/docs/pages/html/_sources/UseCases.rst.txt index f9412d5..035cca5 100644 --- a/docs/pages/html/_sources/UseCases.rst.txt +++ b/docs/pages/html/_sources/UseCases.rst.txt @@ -23,7 +23,7 @@ In the following example we will learn the structure on the Titanic dataset. # Compute edge strength with the chi_square test statistic model = bn.independence_test(model, dfnum, test='chi_square', prune=True) # Plot - bn.plot(model, interactive=False, pos=G['pos']) + G = bn.plot(model, interactive=False, pos=G['pos'], edge_labels='pvalue') # Parameter learning model = bn.parameter_learning.fit(model, dfnum) @@ -35,9 +35,11 @@ In the following example we will learn the structure on the Titanic dataset. .. table:: Learned structure on the Titanic dataset. :align: center - +----------+----------+ - | |fig_t1| | |fig_t2| | - +----------+----------+ + +----------+ + | |fig_t1| | + +----------+ + | |fig_t2| | + +----------+ At this point we can also start making inferences: diff --git a/docs/pages/html/searchindex.js b/docs/pages/html/searchindex.js index 98367a7..8101800 100644 --- a/docs/pages/html/searchindex.js +++ b/docs/pages/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"Adjacency matrix": [[21, "adjacency-matrix"]], "Asia ground truth network versus the learned network.": [[10, "id5"]], "BNLearn\u2019s Documentation": [[23, null]], "Bayesian Parameter Estimation": [[9, "bayesian-parameter-estimation"]], "Bayesian network classifiers": [[7, "bayesian-network-classifiers"]], "Black and white lists": [[27, null]], "Building a causal DAG": [[1, "building-a-causal-dag"]], "Causation": [[14, null]], "Chow-Liu. (A) Detected DAG. (B) DAG pruned on significance.": [[14, "id3"]], "Chow-liu": [[14, "chow-liu"]], "Citing": [[2, "citing"]], "Colab Notebook": [[2, "colab-notebook"]], "Comparison of two networks": [[10, "comparison-of-two-networks"]], "Compute Conditional Probability Distributions (CPDs)": [[16, "compute-conditional-probability-distributions-cpds"]], "Compute Directed Acyclic Graph from data": [[16, "compute-directed-acyclic-graph-from-data"]], "Conditional Probability Distributions (CPD)": [[9, "conditional-probability-distributions-cpd"]], "Constraint-based": [[14, "constraint-based"]], "Constraint-based structure learning algorithms": [[7, "constraint-based-structure-learning-algorithms"]], "Constraint-based. (A) Detected DAG. (B) DAG depicting significance.": [[14, "id6"]], "Contents": [[23, "contents"]], "Continuous Data": [[23, null]], "Create a Bayesian Network, learn its parameters from data and perform the inference": [[4, "create-a-bayesian-network-learn-its-parameters-from-data-and-perform-the-inference"]], "Create a custom Directed Acyclic Graph": [[16, "create-a-custom-directed-acyclic-graph"]], "Create environment": [[6, "create-environment"]], "Data Conversions": [[21, null]], "DataFrames": [[3, null]], "Description": [[16, "description"], [17, "description"], [17, "id1"], [17, "id2"], [17, "id3"], [19, "description"], [19, "id1"]], "Determine causalities when you have data": [[16, "determine-causalities-when-you-have-data"]], "Differences in het edges.": [[10, "id6"]], "Direct-LiNGAM method": [[0, "direct-lingam-method"]], "Directed Acyclic Graphs": [[1, null]], "Discretize continuous datasets automatically": [[0, "discretize-continuous-datasets-automatically"]], "Discretize continuous datasets manually": [[0, "discretize-continuous-datasets-manually"]], "Documentation": [[23, null]], "Edge properties": [[10, "edge-properties"]], "Example (1)": [[4, "example-1"], [5, "example-1"], [9, "example-1"]], "Example (2)": [[4, "example-2"], [5, "example-2"], [9, "example-2"]], "Example (3)": [[4, "example-3"], [5, "example-3"]], "Examples": [[23, null]], "Examples Inference": [[5, "examples-inference"]], "Examples Parameter learning": [[9, "examples-parameter-learning"]], "Exhaustivesearch": [[14, "exhaustivesearch"]], "Exhaustivesearch example": [[14, "id1"]], "Export DAG/BIF": [[3, "export-dag-bif"]], "Forward Sampling": [[13, null]], "Gibbs Sampling": [[13, "gibbs-sampling"]], "Github": [[2, "github"]], "Hillclimbsearch": [[14, "hillclimbsearch"]], "Hillclimbsearch. (A) Detected DAG. (B) DAG with significance. (C) DAG pruned.": [[14, "id2"]], "ICA-LiNGAM method": [[0, "ica-lingam-method"]], "Import DAG/BIF": [[3, "import-dag-bif"]], "Import Error": [[6, "import-error"]], "Import data": [[16, "import-data"]], "Independence test": [[22, null], [22, "id1"]], "Indices and tables": [[23, "indices-and-tables"]], "Inference": [[5, null], [23, null]], "Inference Algorithms": [[5, "inference-algorithms"]], "Inference on the causal generative model": [[1, "inference-on-the-causal-generative-model"]], "Inferences": [[0, "inferences"]], "Install from Pypi (pip)": [[6, null]], "Install from github": [[6, "install-from-github"]], "Installation": [[23, null]], "Installation (short)": [[12, "installation-short"]], "Interactive plot": [[10, null]], "Introduction": [[7, null]], "Learned structure on the Sprinkler data set.": [[4, "id1"]], "Learned structure on the Titanic dataset.": [[16, "id1"]], "LiNGAM Example": [[0, "lingam-example"]], "Licence": [[8, null]], "Local discovery algorithms": [[7, "local-discovery-algorithms"]], "Make inference when you have data": [[16, "make-inference-when-you-have-data"]], "Make inferences": [[16, "make-inferences"]], "Make inferences when you have data and know-how": [[16, "make-inferences-when-you-have-data-and-know-how"]], "Maximum Likelihood Estimation": [[9, "maximum-likelihood-estimation"]], "Medium Blog": [[2, "medium-blog"]], "Modelling Continuous Datasets": [[0, "modelling-continuous-datasets"]], "NaiveBayes": [[14, "naivebayes"]], "Naivebayes Example without and with pruning using chi2 test": [[14, "id5"]], "Node properties": [[10, "node-properties"]], "Other functionalities": [[23, null]], "Overview": [[1, "overview"]], "PC method": [[0, "pc-method"]], "Parameter learning": [[0, "parameter-learning"], [4, "parameter-learning"], [9, null], [23, null]], "Parameters and attributes": [[23, null]], "Plot": [[23, null]], "Plot with GraphViz": [[10, "id3"], [10, "id4"]], "Plot with node-colors": [[10, "id1"]], "Plot with user defined edge properties.": [[10, "id8"]], "Plot with user defined node colors and node sizes.": [[10, "id2"]], "Plot with user defined node properties.": [[10, "id7"]], "Predict": [[11, null], [23, null]], "Probability theory": [[14, "probability-theory"]], "Quick Examples": [[12, "quick-examples"]], "Quickstart": [[12, null], [23, null]], "References": [[0, "references"], [2, "references"]], "Related Packages": [[2, "related-packages"]], "Sampling": [[23, null]], "Saving and Loading": [[24, null]], "Score-based Structure Learning": [[20, "score-based-structure-learning"]], "Score-based algorithms": [[7, "score-based-algorithms"]], "Sorted graph": [[26, "id2"]], "Specifying the probability distributions on your own": [[1, "specifying-the-probability-distributions-on-your-own"]], "Sponsor": [[2, null]], "Start with RAW data": [[4, null]], "Static plot (graphviz)": [[10, "static-plot-graphviz"]], "Static plot (networkx)": [[10, "static-plot-networkx"]], "Structure Learning algorithms": [[7, "structure-learning-algorithms"]], "Structure Scores": [[15, null]], "Structure learning": [[0, "structure-learning"], [4, "structure-learning"], [14, "structure-learning"], [23, null]], "The causal DAG as a generative representation of joint probability": [[1, "the-causal-dag-as-a-generative-representation-of-joint-probability"]], "Topological sort": [[26, null]], "Tree-augmented Naive Bayes (TAN)": [[14, "tree-augmented-naive-bayes-tan"]], "Tree-augmented Naive Bayes. (A) Detected DAG. (B) DAG depicting significance. (C) DAG pruned.": [[14, "id4"]], "Uninstall": [[6, "uninstall"]], "Unsorted graph": [[26, "id1"]], "Use Case Medical domain": [[16, "use-case-medical-domain"]], "Use Case Titanic": [[16, null]], "Validate": [[6, "validate"]], "Vector": [[21, "vector"]], "Working with Continous data": [[0, null]], "adjmat2dict": [[21, "adjmat2dict"]], "adjmat2vec": [[21, "adjmat2vec"]], "bnlearn.bnlearn": [[17, null]], "bnlearn.inference": [[18, null]], "bnlearn.parameter_learning": [[19, null]], "bnlearn.structure_learning": [[20, null]], "dag2adjmat": [[21, "dag2adjmat"]], "vec2adjmat": [[21, "vec2adjmat"]], "vec2df": [[21, "vec2df"]]}, "docnames": ["Continuous Data", "Create DAG", "Documentation", "Example Datasets", "Examples", "Inference", "Installation", "Introduction", "Licence", "Parameter learning", "Plot", "Predict", "Quickstart", "Sampling", "Structure learning", "Structure_scores", "UseCases", "bnlearn.bnlearn", "bnlearn.inference", "bnlearn.parameter_learning", "bnlearn.structure_learning", "dataframe conversions", "independence_test", "index", "saving and loading", "sponsor", "topological_sort", "whitelist_blacklist"], "envversion": {"sphinx": 62, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1}, "filenames": ["Continuous Data.rst", "Create DAG.rst", "Documentation.rst", "Example Datasets.rst", "Examples.rst", "Inference.rst", "Installation.rst", "Introduction.rst", "Licence.rst", "Parameter learning.rst", "Plot.rst", "Predict.rst", "Quickstart.rst", "Sampling.rst", "Structure learning.rst", "Structure_scores.rst", "UseCases.rst", "bnlearn.bnlearn.rst", "bnlearn.inference.rst", "bnlearn.parameter_learning.rst", "bnlearn.structure_learning.rst", "dataframe conversions.rst", "independence_test.rst", "index.rst", "saving and loading.rst", "sponsor.rst", "topological_sort.rst", "whitelist_blacklist.rst"], "indexentries": {"adjmat2dict() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.adjmat2dict", false]], "adjmat2vec() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.adjmat2vec", false]], "bnlearn.bnlearn": [[17, "module-bnlearn.bnlearn", false]], "bnlearn.bnlearn.structure_scores": [[15, "module-bnlearn.bnlearn.structure_scores", false]], "bnlearn.inference": [[18, "module-bnlearn.inference", false]], "bnlearn.parameter_learning": [[19, "module-bnlearn.parameter_learning", false]], "bnlearn.structure_learning": [[20, "module-bnlearn.structure_learning", false]], "check_model() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.check_model", false]], "compare_networks() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.compare_networks", false]], "dag2adjmat() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.dag2adjmat", false]], "df2onehot() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.df2onehot", false]], "fit() (in module bnlearn.inference)": [[18, "bnlearn.inference.fit", false]], "fit() (in module bnlearn.parameter_learning)": [[19, "bnlearn.parameter_learning.fit", false]], "fit() (in module bnlearn.structure_learning)": [[20, "bnlearn.structure_learning.fit", false]], "get_edge_properties() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.get_edge_properties", false]], "get_node_properties() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.get_node_properties", false]], "import_dag() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.import_DAG", false]], "import_example() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.import_example", false]], "independence_test() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.independence_test", false]], "load() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.load", false]], "make_dag() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.make_DAG", false]], "module": [[15, "module-bnlearn.bnlearn.structure_scores", false], [17, "module-bnlearn.bnlearn", false], [18, "module-bnlearn.inference", false], [19, "module-bnlearn.parameter_learning", false], [20, "module-bnlearn.structure_learning", false]], "plot() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.plot", false]], "plot_graphviz() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.plot_graphviz", false]], "predict() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.predict", false]], "print_cpd() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.print_CPD", false]], "query2df() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.query2df", false]], "sampling() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.sampling", false]], "save() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.save", false]], "structure_scores() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.structure_scores", false]], "to_bayesiannetwork() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.to_bayesiannetwork", false]], "to_undirected() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.to_undirected", false]], "topological_sort() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.topological_sort", false]], "vec2adjmat() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.vec2adjmat", false]], "vec2df() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.vec2df", false]]}, "objects": {"bnlearn": [[17, 0, 0, "-", "bnlearn"], [18, 0, 0, "-", "inference"], [19, 0, 0, "-", "parameter_learning"], [20, 0, 0, "-", "structure_learning"]], "bnlearn.bnlearn": [[17, 1, 1, "", "adjmat2dict"], [17, 1, 1, "", "adjmat2vec"], [17, 1, 1, "", "check_model"], [17, 1, 1, "", "compare_networks"], [17, 1, 1, "", "dag2adjmat"], [17, 1, 1, "", "df2onehot"], [17, 1, 1, "", "get_edge_properties"], [17, 1, 1, "", "get_node_properties"], [17, 1, 1, "", "import_DAG"], [17, 1, 1, "", "import_example"], [17, 1, 1, "", "independence_test"], [17, 1, 1, "", "load"], [17, 1, 1, "", "make_DAG"], [17, 1, 1, "", "plot"], [17, 1, 1, "", "plot_graphviz"], [17, 1, 1, "", "predict"], [17, 1, 1, "", "print_CPD"], [17, 1, 1, "", "query2df"], [17, 1, 1, "", "sampling"], [17, 1, 1, "", "save"], [17, 1, 1, "", "structure_scores"], [15, 0, 0, "-", "structure_scores"], [17, 1, 1, "", "to_bayesiannetwork"], [17, 1, 1, "", "to_undirected"], [17, 1, 1, "", "topological_sort"], [17, 1, 1, "", "vec2adjmat"], [17, 1, 1, "", "vec2df"]], "bnlearn.inference": [[18, 1, 1, "", "fit"]], "bnlearn.parameter_learning": [[19, 1, 1, "", "fit"]], "bnlearn.structure_learning": [[20, 1, 1, "", "fit"]]}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "function", "Python function"]}, "objtypes": {"0": "py:module", "1": "py:function"}, "terms": {"": [0, 4, 9, 12, 13, 14, 16, 17, 19, 22], "0": [0, 1, 3, 4, 5, 9, 10, 11, 13, 14, 16, 17, 18, 19, 20, 21, 22, 26], "00": [16, 22], "000": 16, "00000": 0, "000000": [0, 10, 17], "000000e": 22, "0001": 20, "0030": 5, "01": [1, 9, 14], "010043": 0, "012": 9, "01302897644361059": 16, "02465e": 14, "0296": 11, "03": 14, "0335e": 14, "0336": 9, "0345358": 14, "05": [0, 14, 16, 17], "0517": 11, "05333333333333334": 16, "0537": 9, "05457492795389049": 16, "0546": 16, "055": 9, "0555455": 16, "057757": 0, "06": 14, "061629": 17, "061758": 22, "062": 14, "0673": 14, "06818e": 14, "070": 9, "0700": 5, "0750711093051605": 16, "075377e": 22, "07736e": 14, "0797": 16, "080606e": 17, "08061e": 14, "08089070665757782": 16, "08396533044420368": 16, "09": 14, "09174e": 14, "09528": 14, "097": 14, "0f0f0f0f": [10, 17], "0x10": 6, "0xf": 6, "1": [0, 1, 3, 6, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26], "10": [0, 4, 6, 9, 10, 14, 16, 17, 19], "100": [0, 13, 14, 16, 17, 20], "1000": [0, 5, 9, 11, 13, 16, 17, 19, 26], "10000": [4, 9, 10, 16, 17, 20], "1000000": 20, "1007": 14, "10273": 14, "104413": 14, "107": 21, "1092": 16, "11": [0, 14, 16], "1101": 20, "1118": 14, "119": 0, "12": [0, 14], "120": 0, "12147716229348882": 0, "12156934978817462": 16, "1219": 14, "122": 14, "12209": 14, "12278": 14, "123": 9, "12439261418853255": 0, "12510": 14, "125939": 14, "12841": 14, "13": 14, "130": 0, "132": 9, "1327": 0, "13313896987366375": 0, "1342": 14, "135": 0, "1358": 0, "138348623853211": 16, "13913362701908957": 16, "14": [10, 14], "140": 0, "14150": 14, "1423": 5, "14283": 14, "143": 16, "1441": 14, "14it": 16, "15": [0, 10, 14, 17], "150": 0, "1500": 17, "1509": 22, "1510": 0, "152": 14, "15374": 14, "1540": 0, "15664": 14, "157": 14, "15718": 14, "15723270440251572": 16, "1577": 0, "16": [0, 14], "1601": 0, "161": 14, "1625": 9, "165": 0, "1683": 14, "17": [0, 14], "1720": 16, "18": [0, 14], "1810": 14, "1813": 14, "19": [0, 14], "1956": 14, "196919e": 17, "19692e": 14, "197": 22, "19727891156462582": 0, "198": 14, "1988": 16, "1e": 20, "1e6": 20, "2": [0, 1, 3, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26], "20": [14, 17], "200": [16, 17], "2000": 10, "2001": 16, "2009": 2, "2015": 0, "2016": 20, "2020": 8, "2083": 14, "21": [0, 14], "211": 14, "212": 9, "217": 14, "21789354473386183": 16, "22": 14, "2217": 0, "2221": 14, "2246": 14, "226": 14, "22837370242214533": 16, "23": [14, 17], "230": 9, "2315": 16, "233": [14, 17], "23487544483985764": 16, "2370": 16, "24": [0, 6, 9, 14], "240783": 14, "243": 14, "2446183953033268": 4, "247": 14, "2489v3": 20, "24919093851132687": 16, "25": [0, 9, 10, 14], "250": 17, "253731": 16, "25588235": 4, "25588235294117645": 4, "2559": 4, "26": 14, "265": 14, "2665": 0, "2665330661322645": 16, "26it": 16, "27": [0, 14], "28": [0, 14], "282": 14, "2834": 14, "285": [9, 14, 17], "286": 16, "29": [9, 14], "2924901185770751": 4, "294": 14, "2959": 0, "2970": 5, "2986": 11, "29931972789115646": 0, "2nd": 2, "2x": 17, "3": [0, 1, 6, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26], "30": [14, 17], "300": 14, "3000": 0, "30164": 14, "302": 0, "304": 0, "307": 0, "308": 14, "31": [0, 14], "3114": 16, "3114193083573487": 16, "31675675675675674": 16, "318": 0, "319": 9, "31it": 16, "32": [0, 14], "325": 22, "33": [9, 14], "3312": 4, "331202": 16, "334": 16, "33695652173913043": 4, "33755274261603374": 4, "338": 16, "34": [9, 14], "34186": 14, "343": 14, "3481781376518219": 4, "34994e": 14, "35": [10, 14, 17], "350": 0, "351123595505618": 16, "352": 21, "357": 9, "36": 14, "36195e": 14, "362": 22, "365291": 16, "3657": 0, "36791e": 14, "368132": 16, "37": [9, 14], "37291e": 14, "378980": 22, "37910447761194027": 4, "38": 14, "38104089219330856": 16, "382": 14, "382504": 14, "383708e": 17, "38371e": 14, "387": [0, 14], "388": 0, "389": 0, "39": 14, "390": 0, "391": 0, "392": 0, "3926": 14, "394": [14, 17], "39908256880733944": 16, "4": [0, 4, 9, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 26], "40": 14, "401": 16, "4063876651982379": 16, "406634": 16, "409": 14, "41": 14, "413": 9, "414": 9, "4154": 14, "418": 9, "42": 14, "4253": 14, "43": 14, "4324": 21, "434": 14, "438": 20, "44": [0, 14], "444573": 16, "4446": 16, "4453": 14, "45": [14, 16], "45141e": 14, "4592": 16, "46": [0, 14], "4619": 22, "4643": 14, "46798": 14, "47": 14, "47192626": 17, "4737": 14, "476625": 14, "478": 14, "478455": 17, "47it": 16, "48": [9, 14, 20], "4800": 14, "4807692307692308": 4, "488032": 11, "49": [14, 16], "49019607843137253": 16, "492": 9, "49263": 14, "494": [4, 9], "495273": 16, "495455": 16, "498": 9, "5": [0, 1, 9, 14, 16, 17, 18, 19, 20, 21, 22, 26], "50": [9, 10, 14, 17, 19], "500000": 16, "501": 9, "504545": 16, "504727": 16, "506": [4, 9], "507": 9, "5098039215686274": 16, "50it": 16, "51": [9, 14, 16], "5113": 16, "5140": 0, "5192307692307693": 4, "52": 14, "522990": 22, "5240": 14, "53": [14, 17], "54": 14, "540506": 16, "542258e": 22, "5444": 14, "544772": 11, "5455": 22, "5476": 14, "548197": 14, "5554": 16, "555427": 16, "55643e": 14, "5589": 14, "5639": 14, "581": 9, "5828": 14, "585": 9, "586": 9, "59": 14, "593366": 16, "5936123348017621": 16, "6": [0, 10, 14, 16, 21, 22, 26], "60": 10, "600": 17, "6009174311926605": 16, "601286": 22, "604230": 17, "61": 14, "6157": 14, "6189591078066915": 16, "62": [9, 11, 14], "620068": 11, "6201": 11, "6208955223880597": 4, "624": 0, "63": 5, "6300": 5, "631868": 16, "634709": 16, "63681": 14, "64": [14, 17], "642": 9, "6421": 14, "6471e": 14, "647249": 17, "648876404494382": 16, "65": [0, 9], "6518218623481782": 4, "65747e": 14, "66": 9, "6624472573839663": 4, "6630434782608695": 4, "668798": 16, "6688": 4, "67": [14, 16], "68": 16, "680": 9, "6832432432432433": 16, "6848": 14, "6885806916426513": 16, "6886": 16, "694": 14, "696": 14, "7": [1, 14, 16], "70": [0, 9, 10], "70391e": 14, "704964": 0, "7075098814229249": 4, "7081": 14, "71": 14, "711": 14, "7126": 14, "714": 9, "714624": 14, "7179": 14, "71824": 14, "726744e": 22, "729663": 22, "73": [0, 14, 22], "7334669338677354": 16, "74": 9, "741": 14, "7441": 4, "7441176470588236": 4, "74411765": 4, "746269": 16, "75": [9, 14], "7508090614886731": 16, "7553816046966731": 4, "75631e": 14, "76": 14, "761": 14, "7651245551601423": 16, "766384": 14, "7693": 9, "7716262975778547": 16, "7821064552661382": 16, "787": 9, "8": [0, 1, 9, 10, 12, 14, 16, 17, 22], "80": 4, "800": 17, "800px": 10, "81": 22, "817192": 22, "82": 0, "82344e": 14, "8306": 14, "8340": 22, "837": 9, "8427672955974843": 16, "8450": 14, "85": 14, "8577": 5, "8604": 14, "8608663729809104": 16, "861651376146789": 16, "867": 9, "87": [14, 17], "872": 14, "876": 9, "878049": 17, "8784306502118254": 16, "886511e": 17, "88651e": 14, "899": 22, "8_850": 14, "8a0707": [10, 17], "9": [0, 1, 5, 9, 14, 16], "9000": 5, "901702": 17, "902": 14, "906": 14, "90616e": 14, "906474": 17, "91": 14, "915306": 0, "9159": 14, "9160346695557963": 16, "9191092933424222": 16, "92": 14, "9205": 14, "9249288906948395": 16, "926593": 22, "929": 9, "94": 16, "944": 9, "944455": 16, "9454": 16, "9454250720461095": 16, "9462": 9, "9466666666666667": 16, "9573": 14, "959": 14, "964": 14, "96588": 14, "9663": 9, "97": 0, "971198": 0, "974": 14, "978": 14, "979": 14, "985": 14, "98564": 0, "9869710235563894": 16, "987": 9, "987320": 0, "99": [1, 9], "995": 11, "996": 11, "99624": 0, "997": 11, "998": [3, 11, 17], "999": [3, 11, 17], "999112": 0, "9995": 11, "9996": 11, "9997": 11, "9998": 11, "9999": [11, 16], "A": [0, 2, 4, 8, 9, 15, 16, 17, 19, 20, 21, 23, 26], "AND": 8, "AS": 8, "As": [0, 4, 14, 16, 26], "At": [0, 16], "BE": 8, "BUT": 8, "But": [5, 10, 14, 18], "By": [0, 10, 17], "FOR": 8, "For": [0, 1, 4, 9, 14, 16, 17, 18, 19, 21, 22], "IN": 8, "If": [1, 2, 6, 9, 14, 16, 17, 18, 19, 20, 27], "In": [0, 1, 6, 9, 10, 11, 13, 14, 16, 20, 21, 26], "It": [0, 12, 13, 14, 20, 26], "NO": 8, "NOT": 8, "No": [1, 4, 16], "OF": 8, "OR": 8, "One": [9, 17, 19], "Or": [0, 17, 20], "Such": 14, "THE": 8, "TO": 8, "The": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27], "Then": 16, "There": [0, 1], "These": 5, "To": [0, 1, 4, 6, 9, 10, 11, 14, 16, 19, 20, 21], "WITH": 8, "With": [0, 3, 4, 7, 11, 14], "_": 4, "_other_": 17, "_str": 4, "ab": 20, "about": [1, 9, 14, 16, 19], "abov": [0, 4, 8, 10, 17, 20, 21], "absenc": 16, "absent": 6, "absolut": 17, "acceler": 0, "accomplish": 0, "accord": [0, 9, 14, 19], "accordingli": 17, "achiev": [7, 9, 19], "across": [1, 4, 10, 16, 21], "act": 0, "action": 8, "activ": [6, 12], "actual": [1, 4, 9, 13, 17, 19, 26], "acur": 0, "acycl": [0, 9, 14, 17, 20, 23, 26], "acyclid": 0, "ad": [9, 19], "add": [9, 10, 16, 19, 20], "add8e6": 17, "addit": [15, 17], "adjac": [4, 17, 19, 20, 23], "adjmat": [0, 4, 12, 17, 19, 20, 21], "adjmat2dict": [17, 23], "adjmat2vec": [17, 23], "adjmat_dict": 21, "adjmat_diff": 17, "adjust": [4, 10, 17, 20], "advantag": 0, "advic": 16, "advis": 12, "after": [0, 4, 27], "ag": 0, "again": [0, 1, 6, 9], "against": [6, 15, 17], "aggfunc": 17, "aggreg": 17, "aic": 20, "aim": [14, 16], "aka": 14, "akt": 21, "al": [0, 20], "alarm": [3, 9, 14, 16, 17, 19], "algorithm": [0, 14, 18, 20, 23, 26], "all": [0, 5, 6, 7, 8, 9, 10, 11, 14, 16, 17, 18, 19, 20, 24], "allan": 0, "allow": [0, 5, 10, 16, 18, 20], "along": 1, "alpha": [10, 14, 17], "alreadi": [4, 9, 19], "also": [0, 2, 4, 13, 14, 16, 20, 25, 26], "altern": 17, "alwai": [14, 20], "among": [0, 7, 9, 14, 19, 20], "an": [0, 1, 4, 6, 7, 8, 9, 11, 14, 16, 17, 19, 20, 21, 22, 26], "analys": 16, "analysi": [0, 2, 23, 26], "anaphylaxi": 14, "andes": [3, 9, 17], "ani": [0, 1, 3, 8, 9, 14, 15, 16, 17, 20, 22, 26, 27], "anoth": [0, 4, 13, 16, 26], "api": 6, "appendix": 3, "appli": 0, "applic": [16, 26], "apply_prior_knowledge_softli": 20, "approach": [0, 2, 4, 7, 14, 16, 20, 21], "approxim": [5, 14], "ar": [0, 1, 4, 6, 7, 9, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 26, 27], "arc": [17, 26], "argument": 6, "aris": 8, "ark": 21, "arrai": [0, 4, 17, 26], "arround": [16, 21], "arrow": [14, 16], "arrows": [10, 17], "arrowstyl": [10, 17], "artco2": 14, "arxiv": 20, "asia": [3, 4, 5, 9, 11, 14, 16, 17, 20, 22, 24], "ask": [4, 9, 16, 18], "aspect": 17, "ass": 11, "asses": 17, "assess": 0, "assign": 14, "associ": [8, 17, 22], "associaton": 16, "assum": [0, 1, 20], "assumpt": [0, 1, 14], "attach": 1, "attempt": 17, "attract": 14, "attribut": 14, "augment": [7, 20, 23], "author": 8, "auto": 0, "auto_mpg": [0, 17, 20], "automat": [22, 23], "automot": 0, "avail": [0, 7, 11, 17, 21], "avoid": [5, 14, 18], "awai": 14, "b": [17, 20], "back": 21, "base": [0, 4, 10, 11, 13, 15, 16, 17, 21, 22, 23], "basi": 1, "basic": [5, 16, 18], "bay": [3, 7, 13, 16, 17, 19, 20, 23], "bayasian": 16, "bayesian": [0, 1, 2, 3, 8, 11, 13, 14, 15, 16, 17, 19, 20, 23, 26], "bayesiannetwork": [15, 17], "bd": [15, 17, 20], "bdeu": [4, 7, 9, 14, 15, 17, 19, 20], "bdeuscor": [15, 17], "bdsscore": [15, 17], "becaus": [0, 1, 6, 9, 10, 14, 16, 21], "becom": [0, 2, 14, 16, 25], "been": 14, "befor": [0, 9, 14, 19, 26], "being": 16, "belief": [5, 9, 14, 19], "below": [10, 11, 14, 16, 17, 21], "benefit": 23, "best": [0, 14, 16], "better": [1, 15, 17, 20], "between": [0, 1, 4, 7, 9, 10, 11, 14, 16, 17, 20, 21], "bgcolor": [10, 17], "bia": 0, "bibtex": 2, "bic": [0, 4, 7, 10, 14, 15, 16, 17, 19, 20], "bicscor": [15, 17], "bif": [7, 9, 17, 19, 23], "bif_fil": 3, "bifwrit": 3, "bin": 0, "bipartite_layout": 17, "bitcoin": [2, 25], "black": [16, 20, 23], "black_list": [14, 16, 20, 27], "block": 20, "blog": 23, "bn": [0, 3, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 26], "bnlearn": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 21, 22, 24, 26, 27], "bnlearn_model": [17, 24], "book": 21, "bool": [17, 18, 20], "boolean": [11, 14, 18], "both": [0, 4, 7, 9, 14, 16, 20], "boundari": 0, "bp": 14, "brain": 16, "breath": 16, "bring": [4, 9], "broad": 20, "bronc": [9, 10, 11, 14, 16, 22], "bronchiti": 16, "bronchitu": 16, "brows": 14, "bug": [2, 23, 25], "bui": [2, 25], "build": [0, 3, 4, 14, 20, 23], "bw_list_method": [14, 16, 20, 27], "c": [3, 4, 6, 7, 8, 17, 20], "call": [1, 6, 9, 14, 19, 20], "can": [0, 1, 2, 3, 4, 6, 7, 9, 10, 11, 14, 15, 16, 17, 19, 20, 21, 23, 24, 25, 26], "cancer": [5, 16], "captur": [0, 7, 14, 20], "car": 0, "carlo": 14, "cascad": 14, "case": [0, 1, 4, 6, 10, 11, 14, 17, 20, 23], "cat": 17, "catagor": 0, "catagori": [16, 17, 18], "catechol": 14, "categor": [0, 4, 7, 14], "categori": [0, 5], "caus": [0, 9, 14, 19], "causal": [0, 2, 14, 17, 23], "causal_ord": 0, "causal_order_": 0, "causat": [2, 23], "certain": 20, "chain": 14, "challang": 0, "chanc": 16, "chang": [10, 14, 17, 20], "charg": 8, "check": [6, 9, 14, 16, 17], "check_model": [17, 23], "checkmodel": [14, 17], "checkout": 6, "cheer": [2, 25], "chen": 0, "chest": 16, "chi": [14, 20, 22], "chi2": [0, 4, 7], "chi_squar": [0, 10, 14, 16, 17, 22], "choic": [9, 19], "choos": [9, 16, 19], "chosen": 0, "chow": [7, 20, 23, 26], "chun": 0, "circular_layout": 17, "cite": 23, "cl": [7, 14, 16, 20], "claim": 8, "clark": 0, "class": [14, 17, 20], "class_nod": [14, 20, 24], "classif": 14, "classifi": 23, "click": 6, "climb": 7, "cliqu": 5, "close": [0, 9], "closer": 9, "cloud": [9, 19], "cloudi": [1, 3, 4, 5, 9, 12, 13, 14, 15, 17, 18, 19, 21], "cmk": 1, "co": 14, "code": [2, 3, 17], "coeffici": 17, "coffe": [2, 25], "colab": [6, 23], "collect": 17, "color": 17, "colum": 17, "column": [0, 16, 17], "com": [0, 6, 17], "combin": [10, 14, 16, 20], "come": 10, "common": [0, 3, 5, 14], "commonli": [9, 14, 19, 20], "commun": 3, "compar": [2, 4, 7, 10, 15, 16, 17, 20, 23], "compare_network": [4, 10, 12, 16, 17, 20, 23], "comparison": [4, 16, 22, 23], "compel": 0, "compil": 6, "complet": [0, 7], "complex": [4, 9, 14, 16], "complic": 16, "compon": [7, 14], "comput": [0, 4, 5, 7, 9, 10, 14, 15, 17, 18, 20, 22], "concept": [5, 18], "conceptu": 14, "conda": [6, 12], "condit": [0, 1, 5, 7, 8, 14, 18, 19, 20, 23], "condition": [9, 19], "conduct": 0, "config": 20, "configur": [9, 19, 20], "connect": [1, 4, 7, 8, 13, 14, 16, 17, 21], "conserv": 0, "consid": [0, 1, 17], "consist": [0, 9, 11, 14, 17, 19], "consol": 6, "constant": 14, "constraint": [0, 4, 20, 23, 26], "constraintsearch": [4, 7, 20], "construct": [0, 7, 14, 16], "contain": [0, 3, 4, 7, 9, 10, 14, 16, 17, 18, 19, 20, 21, 23, 27], "contan": 17, "context": [0, 16, 26], "contin": [17, 23], "continu": [4, 20], "continuous_column": 0, "contract": 8, "contrast": 0, "contribut": [0, 2, 25], "control": 17, "convers": [0, 7, 23], "convert": [4, 16, 17, 18, 21, 27], "cool": 16, "coordin": 17, "copi": 8, "copyright": 8, "core": 6, "correct": [0, 16], "correl": 2, "correspond": [0, 1, 14], "count": [9, 19, 20], "cpd": [0, 1, 4, 11, 12, 13, 14, 17, 19, 23], "cpd_a": 14, "cpd_b": 14, "cpd_c": 14, "cpd_d": 14, "cpt": [1, 9], "cpt_cloudi": 1, "cpt_rain": 1, "cpt_sprinkler": 1, "cpt_wet_grass": 1, "creat": [0, 1, 3, 5, 10, 11, 12, 13, 14, 17, 21, 23, 26], "cressie_read": 17, "criterion": [7, 14, 20], "critic": 26, "cs228": 14, "current": [9, 15, 16, 17, 19], "custom": 17, "cut": 0, "cvp": 14, "cycl": [17, 26], "cylind": 0, "d": [6, 14, 16, 17, 20], "d3block": 10, "dag": [0, 4, 7, 9, 10, 11, 12, 13, 15, 16, 17, 19, 20, 21, 22, 23, 26], "dag2adjmat": [17, 23], "dag_edg": 27, "dag_nod": 27, "dag_tru": 9, "dag_upd": 9, "dagmodel": 17, "dai": 16, "damag": 8, "data": [1, 2, 5, 7, 9, 10, 11, 12, 13, 14, 17, 18, 19, 20, 22, 24, 26, 27], "datafram": [0, 4, 9, 11, 15, 16, 17, 18, 19, 20, 21, 23], "dataset": [2, 3, 4, 5, 9, 10, 11, 13, 14, 15, 17, 20, 22, 23, 27], "deadlock": 26, "deal": 8, "debug": [17, 18, 19, 20], "decept": 17, "decid": 26, "decis": 4, "deem": [9, 19], "deeper": [0, 9], "default": [4, 6, 10, 14, 17, 18, 19, 20], "defin": [0, 1, 4, 11, 13, 17, 20, 21, 22], "definit": 14, "demonstr": [0, 1, 4, 10, 11, 16, 21], "densiti": 7, "depend": [0, 1, 4, 7, 9, 14, 16, 17, 19, 20, 21], "dependend": 0, "depict": [0, 16, 17], "deriv": [3, 10, 14, 26], "describ": [0, 4, 9, 14, 16, 20], "descript": [0, 23], "design": [2, 14, 16, 23], "desir": [6, 9], "destin": 16, "detail": 18, "detect": [2, 17, 23, 26], "detect_cycl": 17, "determiend": 17, "determin": [14, 20, 23], "devdoc": 6, "df": [0, 3, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 26], "df2onehot": [4, 14, 16, 17, 23, 27], "df_disc": 0, "df_discret": 0, "df_raw": [4, 14, 27], "dfhot": [4, 14, 16, 27], "dfnum": [4, 14, 16, 27], "diagram": 14, "dict": [10, 16, 17, 18, 19, 20], "dict_kei": [9, 16], "dictionari": [15, 17, 21], "did": 16, "differ": [0, 1, 4, 9, 14, 15, 16, 17], "digit": [2, 25], "direct": [4, 7, 9, 14, 17, 20, 21, 23, 26], "directlingam": 20, "dirichlet": [7, 9, 14, 19, 20], "disadvantag": 0, "disconnect": 14, "discoveri": [0, 23], "discret": [1, 7, 9, 14, 16, 19, 20, 23], "discretez": 0, "discretize_valu": 0, "discrimin": 16, "discrit": 0, "discuss": [2, 14, 16, 25], "diseas": 16, "displac": 0, "disrupt": 0, "distribut": [0, 5, 7, 8, 13, 14, 17, 18, 19, 20, 23], "dit": 16, "divid": [0, 20], "dm": 3, "do": [0, 5, 8, 13, 16, 17, 18], "document": 8, "doe": [0, 2, 3, 7, 16, 21, 23], "doesn": [2, 15, 17], "dof": [14, 17, 22], "doi": 14, "domain": [0, 1, 14, 23], "donat": [2, 25], "done": [9, 19, 20, 26], "dot": [0, 14, 17], "dot_graph": 17, "dotgraph": [0, 17], "dotgraph_auto_mpg_lingam_direct": 0, "dotgraph_auto_mpg_lingam_ica": 0, "dotgraph_auto_mpg_pc": 0, "dpi": [14, 17], "draw": 0, "driven": [2, 23], "dtype": [0, 17], "due": 16, "dure": 6, "dysp": [9, 14, 16, 22], "dyspnoea": 16, "e": [0, 9, 14, 19], "each": [0, 1, 3, 4, 9, 11, 14, 15, 16, 17, 18, 19, 26], "easier": 22, "easili": [4, 10, 11, 17], "edg": [0, 1, 4, 7, 11, 13, 14, 15, 16, 17, 20, 21, 22, 23, 26, 27], "edge_alpha": [10, 17], "edge_label": [0, 14, 17], "edge_properti": [10, 17], "edit": 2, "edu": 3, "educ": [2, 25], "effect": [14, 20], "effici": [0, 14], "either": [9, 10, 14, 16, 17, 22], "element": [2, 21], "elimin": [5, 16, 18], "elimination_ord": 18, "eliminationord": 18, "embark": [14, 16, 27], "empir": 20, "emploi": 14, "enabl": 18, "encod": [1, 9, 14, 19], "end": [0, 16], "enforc": 27, "enrich": 17, "ensur": [0, 20], "entir": [10, 11, 16, 17, 26], "env": 6, "env_bnlearn": [6, 12], "environ": [12, 17, 23], "epsilon": 20, "equal": 0, "equat": [14, 20], "equiprob": [9, 19], "equival": [7, 9, 14, 19, 20], "erdog": 6, "erdogan": 8, "erk": 21, "ermongroup": 14, "errcaut": 14, "errlowoutput": 14, "error": [0, 17, 18, 19, 20, 23], "especi": [16, 26], "establish": 0, "estim": [0, 1, 7, 14, 16, 19, 20, 23], "et": [0, 20], "etc": [4, 14], "evalu": 20, "even": [4, 9, 14, 16, 19], "event": 8, "everi": [9, 14, 19, 20], "evid": [0, 1, 4, 5, 11, 12, 14, 16, 17, 18], "evidence_card": [1, 14], "ex": [4, 7, 14, 20], "exact": [5, 18], "exact_inf": 18, "exactli": [0, 4, 11], "examin": [1, 14, 16, 17, 22, 26], "exampl": [1, 3, 6, 7, 10, 11, 13, 15, 16, 17, 18, 19, 20, 21, 22, 24, 26, 27], "except": [11, 17, 18], "exchang": 3, "excl_background": 17, "exclud": [0, 14, 16, 20, 27], "execut": 17, "exercis": [4, 9], "exhaust": [4, 14], "exhaustivesearch": [4, 7, 20, 23], "exhibit": 0, "exist": [0, 9, 14, 17, 19], "exit": 20, "expco2": 14, "expens": 4, "experi": 16, "experiment": 3, "expert": [4, 16], "expertis": 0, "explain": 1, "explanatori": 0, "exponenti": [14, 20], "export": [17, 23], "express": [8, 9, 19], "extend": 0, "extens": 23, "extract": [4, 9, 17, 21], "extremli": [9, 19], "facecolor": [10, 17], "fact": [9, 19], "factor": [0, 1, 5, 14, 16, 18], "fail": 6, "faith": 0, "fals": [0, 4, 9, 10, 14, 16, 17, 18, 19, 20, 21], "far": [9, 19], "fast": 14, "featur": [2, 14, 17, 23, 25], "feedback": [14, 26], "feel": 16, "few": [3, 14, 16], "ffffff": 17, "fig": 17, "figsiz": [14, 17], "figur": [0, 6, 10, 14, 17], "file": [3, 7, 8, 17, 19], "filenam": [0, 3, 17], "filepath": [3, 9, 17, 24], "fill": [9, 19], "filter": 20, "final": [4, 14, 20], "find": [5, 14, 16], "finit": 21, "fio2": 14, "first": [0, 1, 4, 6, 10, 11, 16], "fit": [0, 1, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 26, 27], "fix": 6, "fixed_edg": 20, "flag": [4, 14], "float": [0, 15, 17, 19, 20], "float64": 0, "focu": 23, "follow": [0, 1, 2, 6, 7, 8, 9, 10, 11, 14, 15, 16, 17, 20, 25, 26], "font_color": [10, 17], "font_famili": [10, 17], "font_siz": [10, 14, 17], "forc": [6, 17], "form": [2, 14, 16, 17, 21, 25], "format": 3, "formul": 14, "forward": [15, 17, 23], "found": [2, 3, 14, 15, 16, 17], "four": [11, 14, 15, 17], "fragil": [9, 19], "fragment": [9, 19], "frame": 0, "free": [8, 26], "freeman_tuckei": 17, "freez": 0, "frequenc": [0, 9, 19], "frequent": [9, 19], "from": [0, 1, 2, 3, 5, 8, 9, 10, 13, 14, 17, 18, 19, 20, 21, 22, 23, 27], "fuel": 0, "full": 21, "fulli": 7, "fun": 16, "funciton": 0, "function": [0, 2, 3, 4, 7, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 24], "fundament": 14, "furnish": 8, "further": [1, 3, 14], "furthermor": [0, 16], "g": [0, 3, 4, 6, 9, 10, 12, 14, 16, 17, 19, 20, 22, 26], "g_sq": 17, "gather": 17, "gaussian": [0, 20], "ge": 27, "gene": 21, "gener": [2, 9, 16, 17, 23, 26], "get": [1, 6, 14, 16, 17, 21], "get_cpd": 0, "get_edge_properti": [10, 17, 23], "get_node_properti": [10, 17, 23], "gf": 27, "gibb": [17, 23], "git": 6, "github": [0, 14, 23, 25], "give": [17, 26], "given": [0, 4, 5, 7, 9, 14, 16, 19, 20], "global": 14, "glue": 14, "go": [1, 2, 6, 11, 14, 25], "goal": [4, 16, 21, 22], "good": [0, 14], "gra": 5, "grammar": 26, "grant": 8, "graph": [0, 7, 9, 10, 14, 17, 20, 21, 23], "graphic": [1, 2, 8, 14, 16, 23], "graphviz": [0, 14, 17, 23], "graphviz_layout": 17, "grass": [1, 5], "great": [0, 1, 9], "greater": 20, "greedi": [4, 14, 18], "grid": [4, 14, 17], "ground": [4, 20], "group": [0, 17, 18], "groupbi": [17, 18], "guarante": 0, "guess": [9, 19], "guid": [2, 23], "ha": [0, 9, 14, 16, 19, 20, 26], "habbit": 0, "had": [11, 16], "hand": [0, 1], "handl": 16, "happen": 0, "hardwar": 4, "have": [0, 1, 4, 5, 7, 9, 14, 15, 17, 19, 20, 23], "hc": [0, 4, 7, 10, 14, 16, 20, 27], "head": [0, 4, 9, 13], "header": [4, 14, 17], "heavi": 16, "heavili": [17, 18], "height": [10, 17], "help": 4, "here": [1, 2, 3, 14, 15, 17, 25], "herebi": 8, "heurist": [4, 14], "heuristig": 14, "hex": 17, "hi": [4, 9], "hidden": [2, 23], "hierarchi": 0, "high": 0, "higher": [4, 14, 15, 16, 17], "highest": [5, 11, 16, 17], "highlight": 17, "hill": 7, "hillclimbsearch": [4, 20, 23], "histori": 14, "hold": 14, "holder": 8, "horsepow": 0, "horsepower_categori": 0, "hot": [0, 3, 4, 17], "how": [0, 4, 6, 7, 9, 11, 14, 19, 20, 23], "howev": [6, 15, 17], "hr": 14, "hrbp": 14, "hrekg": 14, "hrsat": 14, "hte": [0, 14], "htm": 3, "html": [6, 18], "http": [0, 3, 6, 14, 17, 18, 20], "huge": [14, 16], "hugin": 3, "hundr": [14, 16], "hybrid": [0, 14, 20], "hypothes": [7, 14], "hypothesi": [0, 4, 7, 14], "hypovolemia": 14, "i": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27], "ica": [20, 23], "idea": [0, 2, 9, 14, 25], "ideal": 14, "identif": [0, 4], "identifi": [0, 4, 7, 14], "ignor": 17, "ignore_shap": 17, "illustr": 21, "immens": [9, 19], "impact": [17, 18], "implement": [0, 7, 14, 17, 21, 23], "impli": [2, 8], "import": [0, 1, 4, 5, 9, 10, 11, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 26, 27], "import_dag": [3, 4, 5, 9, 10, 12, 13, 17, 18, 19, 20, 21, 23, 26], "import_exampl": [0, 3, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 27], "importerror": 6, "improv": [0, 14, 20], "includ": [8, 16, 17, 27], "include_lowest": 0, "incompat": 6, "incorpor": 14, "incorrect": 0, "increas": [14, 16, 17], "increment": 14, "independ": [0, 1, 4, 7, 14, 17, 20, 23], "independence_test": [0, 10, 12, 14, 16, 17, 20, 22, 23], "index": 23, "indic": [4, 6, 7, 14, 17, 21], "individu": 7, "induct": 14, "infeas": 14, "infer": [2, 3, 7, 8, 9, 11, 12, 17], "influenc": [14, 21], "info": [17, 18, 19, 20], "inform": [3, 4, 7, 14, 16, 17, 20], "informati": 17, "initi": [0, 16, 17], "input": [4, 10, 11, 16, 17, 20, 21, 27], "instal": [4, 10], "instanc": [0, 15, 17], "int": [17, 18, 20], "interact": [0, 16, 17, 23], "interdepend": [14, 26], "intern": 3, "interpret": 0, "interpretebl": [15, 17], "intersect": 16, "interv": 0, "intervalindex": 0, "introduc": 0, "introduct": 23, "intub": 14, "intuit": 23, "invari": 1, "inventor": 0, "investig": [0, 4, 9], "involv": [0, 4, 5, 14, 18, 20], "io": 14, "isol": 6, "issu": [0, 23], "iter": [14, 20], "its": [0, 5, 9, 14, 15, 17, 21, 23, 26], "jl": 0, "jnk": 21, "job": 26, "john": 0, "joint": [5, 13, 17, 18, 23], "jona": 2, "journal": [16, 20], "judgement": [4, 14], "judgment": 7, "julia": 0, "jupyt": 6, "just": 26, "k": 14, "k2": [4, 7, 9, 14, 15, 17, 19, 20], "k2score": [15, 17], "keep": [14, 17, 23], "kei": [4, 9, 14, 16, 17, 19, 20], "kernel": [1, 6], "kind": 8, "kinkedtub": 14, "know": [1, 10, 23], "knowledg": [0, 1, 2, 3, 4, 14, 16, 23], "known": 16, "kochenderf": 0, "kruskal": 14, "kwarg": [15, 17], "label": [0, 17], "lack": [9, 19], "larg": [9, 14, 19, 21], "larger": [14, 17, 21], "last": 6, "latest": 6, "lauritzen": 16, "layout": [10, 17, 22], "learn": [1, 2, 3, 8, 11, 13, 17, 19, 21, 22, 24, 26, 27], "learndiscretebayesnet": 0, "least": [0, 4, 26], "lectur": 2, "left": [4, 21], "len": 17, "length": 0, "less": [0, 14, 17, 20], "let": [0, 1, 4, 5, 6, 9, 10, 11, 12, 14, 16, 17, 22, 26], "level": [4, 7, 14], "leverag": 0, "liabil": 8, "liabl": 8, "librari": [1, 2, 3, 4, 7, 9, 10, 13, 14, 17, 19, 21, 22, 23], "licens": 8, "lift": 16, "like": [0, 3, 14, 16, 17], "likelihood": [7, 14, 19, 23], "limit": [8, 14, 16, 20, 27], "line": [6, 11, 17], "linear": [0, 20, 26], "linearili": 17, "lingam": [17, 20, 23], "link": 9, "list": [6, 16, 17, 18, 20, 23], "literatur": 16, "liu": [7, 20, 23, 26], "ll": [4, 9], "load": [0, 3, 4, 5, 7, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 27], "local": [4, 14, 16, 20, 23], "log10": [10, 17], "log_likelihood": 17, "look": [0, 10, 23], "loop": 14, "lot": [11, 14], "low": 0, "lower": [0, 20], "luckili": 16, "lung": [5, 9, 11, 14, 16, 22, 24], "lvedvolum": 14, "lvfailur": 14, "m": [0, 20], "machin": [4, 20], "mai": [0, 10, 16, 18, 21, 26], "main": [5, 7, 9, 14], "maintain": 23, "make": [0, 1, 4, 5, 7, 9, 10, 11, 13, 14, 15, 17, 19, 20, 21, 22, 23, 26], "make_dag": [0, 1, 4, 11, 13, 14, 15, 16, 17, 23, 26], "make_dot": 0, "mani": [4, 9, 10, 14, 26], "manipul": 14, "manner": [0, 4, 14, 21], "manual": [13, 23], "manufactur": 26, "map": 20, "marco": 20, "margin": [5, 14, 18], "markov": [1, 14, 17], "match": 4, "mate": [2, 25], "mathemat": 14, "matplotlib": 10, "matrix": [4, 17, 19, 20, 23], "matter": 0, "max": [0, 17], "max_indegre": 20, "max_it": 20, "max_iter": 0, "maxim": [9, 14, 19], "maxima": 20, "maximum": [7, 11, 14, 17, 18, 19, 20, 23], "maximumlikelihood": [0, 4, 14, 19], "maxscal": [10, 17], "mdl": [14, 20], "me": [2, 16, 25], "mean": [14, 16], "meaning": 0, "measur": [4, 14, 16, 20], "mechan": 1, "medic": 23, "medium": [0, 23, 25], "mek": 21, "menu": [2, 6], "merchant": 8, "merg": 8, "messag": 17, "method": [4, 8, 14, 15, 16, 17, 20, 23], "methodtyp": [0, 4, 10, 13, 14, 16, 17, 19, 20, 24, 26, 27], "michael": 2, "might": [1, 9, 19], "min_weight": 17, "minfil": 18, "minim": [4, 17], "minima": 14, "minimum": [0, 17], "minmax_dist": 17, "minneighbor": 18, "minscal": [10, 17], "minvol": 14, "minvolset": 14, "minweight": 18, "miser": 3, "miss": [3, 4, 9], "mit": 8, "mitig": [9, 19], "mix": [0, 4, 16, 17, 20, 27], "ml": [9, 19], "mle": [0, 9, 19], "mmhc": 20, "model": [2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 26, 27], "model1": 14, "model2": 14, "model3": 14, "model_1": 17, "model_2": 17, "model_edg": [17, 20], "model_ex_b": 4, "model_ex_bdeu": 4, "model_ex_k2": 4, "model_hc_b": 4, "model_hc_bdeu": 4, "model_hc_k2": 4, "model_learn": 4, "model_ml": 0, "model_pl": 12, "model_sl": [10, 12, 20], "model_tru": 4, "model_upd": 19, "model_year": 0, "moder": 0, "modifi": [8, 17], "modified_log_likelihood": 17, "modul": [6, 18, 23], "mont": 14, "more": [1, 3, 4, 9, 10, 14, 16, 17, 19], "most": [1, 6, 14, 20, 23], "motiv": 16, "mpg": 0, "much": [5, 9, 14, 18], "multiarrai": 6, "multinomi": 7, "multipartite_layout": 17, "multipl": [0, 14, 16, 17], "must": [4, 17, 26], "mutual": 14, "my": [2, 6, 16, 25], "mykel": 0, "n": [0, 3, 4, 6, 9, 10, 11, 12, 13, 16, 17, 19, 20, 26], "n_job": [19, 20], "naiv": [7, 20, 23], "naivebay": [17, 20, 23], "naivebayesian": 7, "name": [0, 4, 6, 14, 16, 17, 18, 20, 21], "name_of_node_1": 18, "name_of_node_2": 18, "natur": [9, 19], "na\u00efv": 14, "nb": [7, 17, 20], "need": [0, 1, 4, 6, 9, 10, 12, 14, 15, 16, 17, 19], "neg": 5, "neither": 16, "net": 14, "network": [0, 1, 3, 8, 9, 11, 13, 14, 17, 19, 20, 23], "networkx": 23, "never": [16, 20], "nevertheless": 14, "new": [0, 1, 10, 12, 14], "next": 16, "neyman": 17, "nice": [0, 1, 17], "nielsen": 2, "node": [1, 4, 7, 9, 11, 14, 16, 17, 19, 20, 21, 23, 26, 27], "node1": 17, "node2": 17, "node_color": [10, 17], "node_properti": [10, 17], "node_s": [10, 17], "node_shap": [10, 17], "non": [0, 4, 16, 17, 20], "none": [10, 14, 16, 17, 18, 19, 20], "noninfring": 8, "nonneg": 19, "normal": [0, 9, 19], "note": [0, 1, 2, 3, 4, 9, 10, 14, 16, 17], "notebook": [6, 17, 23], "noth": [1, 4, 14], "notic": [6, 8], "now": [0, 1, 6, 9, 11, 13, 14, 16], "np": [0, 17], "null": [4, 7, 14], "num": 17, "number": [4, 9, 14, 16, 17, 20, 21], "numer": [16, 17, 20], "numpi": [0, 6], "o": [10, 17], "object": [17, 18, 19], "observ": [0, 4, 7, 9, 14, 19, 20], "obtain": [0, 8], "obvious": [11, 17], "occur": [6, 9, 14, 19], "off": [5, 9, 19], "offer": 23, "often": [1, 9, 14, 19], "older": 6, "onc": 14, "one": [0, 1, 3, 4, 9, 14, 16, 17, 19, 26], "onehot": [16, 27], "ones": [9, 18, 19], "onli": [0, 9, 10, 11, 14, 15, 16, 17, 20, 26, 27], "open": [2, 9, 25], "oper": 26, "optim": [7, 14, 20], "option": [0, 17, 18, 20], "order": [0, 13, 16, 17, 18, 26], "org": [6, 14, 18, 20], "orient": 0, "orienti": 1, "origin": 0, "other": [0, 2, 4, 8, 14, 16, 17, 20, 25, 26], "otherwai": 21, "otherwis": [1, 8], "our": [1, 4, 5, 9, 14, 16, 18, 19], "out": [0, 8, 9], "outcom": 0, "output": [0, 14, 17, 18, 21], "outward": 14, "over": [1, 2, 5, 18, 23, 25], "overfit": [9, 19], "overview": 23, "overwit": 17, "overwrit": [17, 24], "own": [0, 4, 23], "p": [0, 5, 7, 9, 11, 14, 16, 17, 18, 19, 22], "p38": 21, "p_valu": [4, 10, 14, 17, 22], "packag": [3, 8, 23], "page": [2, 23, 25], "pair": [1, 14, 17, 21, 22], "panda": [0, 3, 17, 19], "pap": 14, "param": [15, 17, 19, 20], "paramet": [1, 3, 7, 8, 10, 13, 14, 15, 16, 17, 18, 19, 20], "parameter_learn": [0, 3, 4, 9, 11, 12, 13, 15, 16, 17, 23], "parametr": [0, 20], "params_interact": [10, 17], "params_lingam": [0, 20], "params_stat": [10, 14, 17], "paramt": 20, "parch": [14, 16, 27], "parent": [9, 14, 19, 20], "part": [14, 16], "partial": 0, "particular": [8, 26], "pass": [15, 17, 20], "path": [17, 26], "path_color": 17, "pathfind": 3, "pathnam": 17, "patient": 16, "pattern": [0, 14], "pc": [7, 20, 23], "pclass": [4, 16, 27], "pcwp": 14, "pd": [0, 3, 15, 17, 19, 20], "pdag": 0, "pdf": 17, "pearl": 2, "per": [4, 16], "perc_min_num": 17, "percentag": 17, "perfomr": 0, "perform": [0, 11, 14, 16, 17, 20, 22, 23, 26], "permiss": 8, "permit": 8, "person": [5, 8], "peter": [0, 2], "pgmpy": [1, 2, 3, 14, 15, 17, 18, 20, 23], "phi": [0, 4, 5, 11, 16], "pick": 14, "pickl": 17, "pip": [4, 10, 12, 23], "pip2": 21, "pip3": 21, "pipelin": 23, "pka": 21, "pkc": 21, "pkl": 17, "plai": 16, "planar_layout": 17, "plcg": 21, "pleas": 18, "plolt": 17, "plot": [0, 1, 3, 4, 6, 7, 9, 11, 12, 14, 16, 17, 18, 19, 20, 22, 26, 27], "plot_graphviz": [0, 10, 14, 17, 23], "po": [4, 10, 14, 16, 17, 20, 22], "point": [0, 4, 9, 16, 21, 26], "polynomi": 14, "popular": 0, "portion": 8, "posit": 17, "possibl": [0, 7, 9, 13, 14, 20, 26], "posterior": [7, 14], "pout": [11, 17], "pp": 20, "practic": [3, 4, 14], "pre": [0, 3, 4, 9, 16, 17], "pred": 17, "predict": 17, "prediction_coef": 17, "prediction_feature_import": 17, "prediction_feature_indic": 17, "prediction_line_color": 17, "prediction_target_label": 17, "predictor": 0, "preprocess": 14, "presenc": 16, "present": [4, 9, 17], "press": [2, 14, 25], "previou": 22, "previous": 4, "prim": 14, "principl": 0, "print": [0, 1, 3, 4, 9, 11, 12, 14, 16, 17, 18, 19, 21, 22], "print_cpd": [1, 4, 9, 11, 14, 16, 17, 23], "prior": [9, 14, 19, 20], "prior_knowledg": 20, "probabilist": [2, 9, 14], "probabilti": 11, "probabl": [4, 5, 7, 11, 17, 18, 19, 23], "problem": [6, 9, 19, 26], "proce": 14, "procedur": [0, 20], "process": [0, 3, 4, 9, 16, 17, 18], "product": [2, 5, 18, 25], "profil": [2, 25], "progress": [17, 18, 19], "prohibit": 14, "project": [2, 25], "propag": 5, "properti": [0, 17, 23], "propos": [0, 14], "provid": [1, 8, 14, 16, 17, 18, 20], "prune": [0, 10, 16, 17], "pseudo": [9, 19], "publish": 8, "pull": [2, 25], "pulmembolu": 14, "purpos": [8, 10, 16, 21], "put": 16, "pvalu": [0, 10, 14, 17], "pvsat": 14, "pwling": 20, "pydot_layout": 17, "pypi": 23, "python": [2, 6, 8, 12, 17, 23], "q": [4, 16], "q1": [1, 4, 5, 16], "q2": [5, 16], "q3": 16, "q4": 16, "quantit": 9, "queri": [5, 11, 12, 16, 17, 18], "query2df": [17, 23], "question": [4, 9, 16, 17, 18], "quick": 23, "quit": [0, 4, 14], "r": [0, 17, 20], "radiat": 14, "raf": 21, "rai": 16, "rain": [1, 3, 4, 5, 9, 12, 13, 14, 15, 17, 18, 21], "rais": 17, "random": [0, 14], "random_discret": 14, "random_layout": 17, "random_st": [0, 20], "rang": 0, "rank": 26, "raw": [14, 16, 23], "re": [1, 16], "read": [4, 14, 21], "readili": [1, 3, 16, 21], "readwrit": 3, "real": [0, 26], "reason": 9, "recent": [6, 16], "record": 16, "recov": 0, "red": [16, 17], "refer": [14, 17, 18, 20, 23, 26], "reflect": 0, "regard": 16, "regardless": 0, "regress": 0, "reichenbach": 14, "rel": [9, 19], "relat": [4, 11, 16, 23], "relationship": [0, 1, 2, 4, 9, 14, 16, 17, 20, 21, 23], "relax": 14, "reli": 7, "remain": [0, 20], "remov": [0, 6, 7, 14, 20, 27], "render": 17, "repeat": [0, 16], "repo": [2, 25], "report": [0, 2, 23, 25], "repres": [1, 9, 15, 16, 17, 19, 21, 26], "represent": [17, 23], "request": [2, 25], "requir": [3, 13, 14, 17, 20, 21], "research": 20, "reset": 6, "residu": 0, "respons": 26, "restart": 6, "restrict": [8, 14], "result": [0, 3, 6, 7, 9, 10, 11, 14, 16, 17, 20, 21, 22, 27], "retriev": [10, 17, 21], "return": [11, 14, 15, 16, 17, 18, 20, 26], "return_all_dag": 20, "reveal": [2, 23], "right": [0, 2, 4, 8, 21], "risk": 16, "robust": 14, "roman": 10, "root": [14, 20], "root_nod": [14, 16, 20, 26], "row": [0, 17, 21], "royal": 16, "rtype": [15, 17, 19, 20], "rule": 14, "run": [4, 6, 11], "runtim": 6, "runtimeerror": 6, "sach": [3, 9, 17, 21], "said": 26, "salari": 2, "same": [0, 5, 9, 11, 14, 17, 18, 22], "sampel": 17, "sampl": [0, 3, 4, 7, 8, 9, 10, 11, 12, 14, 16, 17, 19, 20, 22, 26], "san": 17, "saniti": 14, "sao2": 14, "save": [5, 17, 23], "scale": [10, 17], "scenario": 16, "schedul": 26, "score": [4, 12, 14, 16, 17, 19, 23], "scoretyp": [0, 4, 10, 14, 19, 20], "scoring_method": [15, 17], "screen": [16, 17, 18, 19], "screenshot": 10, "scutari": 20, "sd": 20, "search": [4, 7, 14, 19, 20, 23, 27], "second": 16, "section": [6, 14, 16], "see": [0, 4, 6, 9, 11, 14, 16, 20, 21], "seen": [9, 21], "select": [17, 20], "sell": 8, "semi": [0, 20], "sens": [9, 19], "sensibl": [9, 19], "sensit": 4, "sentenc": 26, "sep": 17, "seper": [9, 19], "sequenc": 26, "serial": 26, "serif": 17, "serv": 0, "set": [0, 1, 2, 5, 6, 7, 9, 10, 14, 16, 17, 20, 22, 26], "setgraphviz": 17, "setup": 1, "sever": [3, 4], "sex": [4, 14, 16, 27], "shall": 8, "shape": [17, 21], "share": 0, "shell_layout": 17, "shimizu": 20, "short": [16, 23], "should": [0, 4, 6, 9, 14, 17, 18, 19, 26], "show": [1, 9, 11, 16, 17, 21, 22], "show_slid": 17, "showcas": 4, "showfig": 17, "shown": [9, 14, 17], "shunt": 14, "sibsp": 16, "side": 2, "signfic": 14, "signific": [0, 4, 7, 10, 16, 17], "significance_level": [17, 22], "simpl": [1, 4, 6, 9, 16, 17, 19, 23], "simpli": [9, 10, 11, 14, 19, 26], "simplifi": 0, "singl": [9, 11, 14, 16, 17, 19], "sisl": 0, "size": [0, 4, 9, 14, 17, 19, 20], "skeleton": 0, "slide": 2, "slightli": 16, "small": [0, 4, 11, 14, 16, 21], "smaller": [5, 18], "smoke": [5, 9, 10, 11, 14, 16, 22], "smoker": 5, "smooth": 19, "so": [5, 8, 9, 14, 18, 19], "societi": 16, "softwar": 8, "solv": 6, "some": [0, 4, 5, 10, 11, 12, 13, 14, 16, 17, 21], "sometim": 1, "somewhat": [9, 19], "sort": [17, 23], "sourc": [0, 2, 14, 16, 17, 21, 22], "space": [7, 14, 19, 20], "span": 14, "spars": [17, 21], "special": [14, 17], "specif": [0, 9, 10, 14, 15, 17, 19], "specifi": [0, 9, 10, 11, 14, 16, 17, 19, 23], "specifici": 4, "spectral_layout": 17, "speed": [17, 18], "spiegelhalt": 16, "split": 7, "sponser": 23, "sponsor": [23, 25], "spring_layout": 17, "sprinkler": [1, 3, 5, 9, 12, 13, 14, 15, 16, 17, 18, 19, 21, 26], "spuriou": 0, "squar": [0, 14, 20, 21, 22], "stackoverflow": 17, "standard": 0, "star": [2, 25], "start": [6, 7, 9, 11, 12, 14, 16, 17, 19, 20, 21, 23, 26], "stat_test": [14, 17, 22], "state": [9, 11, 14, 16, 17, 19], "static": [17, 23], "statis": 17, "statist": [0, 4, 7, 9, 10, 14, 16, 17, 20, 22], "statu": 17, "step": [0, 3, 14, 16], "stop": 7, "store": [15, 16, 17, 21], "storm": 21, "stormofsword": [17, 21], "str": [15, 17, 18, 19, 20], "straight": [15, 17], "straightforward": [0, 4, 9, 12, 14, 19], "strategi": [14, 19, 20], "strength": [0, 10, 14, 16, 17, 20, 22], "string": [17, 18, 20], "strokevolum": 14, "structer": 16, "structur": [1, 2, 3, 8, 10, 17, 21, 22, 24, 26, 27], "structure_learn": [0, 3, 4, 6, 10, 12, 14, 16, 17, 22, 23, 24, 26, 27], "structure_scor": [15, 17, 20, 23], "stuctur": 17, "subject": [0, 8], "sublicens": 8, "subscrib": [2, 25], "substack": [2, 25], "substanti": 8, "suffici": [4, 14, 16], "sum": 17, "super": [14, 20], "superior": 0, "support": [2, 7, 9, 15, 17, 19, 23, 25], "suppos": [9, 16], "sure": 16, "surviv": [4, 14, 16, 27], "suspicion": 16, "sword": 21, "symmetr": 17, "synthet": 16, "system": [1, 16, 17, 26], "t": [0, 2, 15, 17], "tabl": [1, 4, 9, 16, 21], "tablefmt": [4, 14, 17], "tabu_length": 20, "tabul": [4, 14, 17], "tabularcpd": [1, 14, 17], "taget": [17, 21], "take": [9, 13, 14, 16, 17, 18, 19, 26], "tan": [7, 20, 23, 24], "target": [0, 14, 17, 21, 22], "task": [0, 9, 16, 19, 20, 26], "taskesen": 8, "techniqu": [14, 17, 20], "teh": 16, "tell": [0, 14], "temp": 17, "ten": 14, "term": [0, 1, 9, 20], "termin": 14, "test": [0, 4, 7, 10, 16, 17, 20, 23], "th": 11, "than": [0, 1, 14, 16, 20], "thei": [9, 20, 27], "them": [0, 5, 16, 18], "theorem": [2, 14, 23], "theori": [21, 23], "therefor": [1, 3, 14], "thi": [0, 1, 2, 3, 4, 6, 7, 8, 9, 11, 14, 15, 16, 17, 18, 19, 20, 21, 23, 25, 26], "think": [9, 19], "third": 14, "those": [9, 14, 19, 20, 27], "though": [1, 11], "thousand": [14, 16], "three": [0, 14, 20], "threshold": 0, "throughout": [7, 14], "thu": [0, 5, 14, 18, 26], "ticket": 14, "tim": 0, "time": [4, 10, 11, 21, 26], "tip": 16, "titan": [4, 14, 23, 27], "titl": 17, "to_bayesiannetwork": [17, 23], "to_df": [17, 18], "to_undirect": [17, 23], "togeth": [0, 14], "toi": 0, "too": 16, "tooltip": 0, "top": 23, "topic": 1, "topolog": [17, 23], "topological_sort": [17, 23, 26], "tort": 8, "total": [9, 19], "toward": [4, 16], "tpr": 14, "trace": [17, 18, 19, 20], "traceback": 6, "tractabl": 14, "train": 14, "transform": [14, 17], "trap": 14, "travers": 20, "treatment": 16, "tree": [5, 7, 20, 23], "treesearch": 20, "troubleshoot": 6, "true": [0, 4, 9, 10, 13, 14, 16, 17, 18, 21, 22, 24], "truth": [4, 9, 20], "try": [5, 9], "tub": [9, 14, 16, 17, 22], "tuberculosi": 16, "tupl": [17, 20], "two": [5, 7, 14, 16, 17, 20, 22, 23], "type": [0, 4, 15, 16, 17, 18, 19, 20], "typic": 0, "u": [0, 5, 6, 14, 18], "uncertainti": 14, "uncorrel": 17, "under": [0, 14, 16, 17], "underli": [0, 9, 19], "underneath": [1, 14, 26], "understand": [0, 1, 11], "undirect": [0, 7, 14, 17], "unequ": 20, "uniform": [0, 9, 19], "uninstal": 23, "uniqu": [4, 17, 21], "unless": [9, 19], "unstabl": [9, 19], "unstructur": 16, "until": [7, 14], "updat": [1, 6, 9, 14, 17, 19], "url": 17, "us": [0, 1, 2, 3, 4, 6, 7, 8, 9, 10, 11, 13, 15, 17, 18, 19, 20, 21, 22, 23, 24, 26], "usag": 0, "user": [4, 6, 13, 17, 22], "util": [0, 17], "v": [0, 4, 14], "valid": [17, 23, 26], "valu": [0, 1, 3, 4, 5, 7, 9, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22], "variabl": [0, 1, 4, 5, 7, 9, 10, 11, 12, 14, 16, 17, 18, 19, 20, 21, 22, 27], "variable_card": [1, 14], "variablescan": 27, "variou": [0, 2, 10, 14, 16, 17, 21, 23, 25], "ve": 18, "vec": [17, 21], "vec2adjmat": [17, 23], "vec2df": [17, 23], "vector": [17, 23], "vehicl": 0, "ventalv": 14, "ventlung": 14, "ventmach": 14, "venttub": 14, "verbos": [0, 11, 13, 17, 18, 19, 20, 26], "veri": [0, 4, 9, 10, 14, 15, 16, 17, 19], "version": 6, "vertic": [14, 21, 26], "vfml": 3, "viarabl": 0, "view": [0, 17], "violat": 0, "visibl": 17, "visit": 16, "visual": [14, 17], "wa": [0, 4, 9, 14, 16, 19], "wai": [0, 2, 9, 16, 19, 23, 25], "wait": 4, "want": [5, 6, 9, 10, 14, 16, 18, 19, 23], "warm": 0, "warn": [0, 17, 18, 19, 20], "warranti": 8, "washington": 3, "water": [14, 17], "we": [0, 1, 4, 5, 9, 10, 11, 12, 14, 16, 17, 18, 19, 21, 22, 26], "web": 17, "weight": [0, 10, 14, 17, 21], "weightedminfil": 18, "weigth": 21, "well": [0, 4, 7, 14, 20], "were": [0, 4], "wet": [1, 5], "wet_grass": [1, 3, 4, 5, 9, 12, 13, 14, 15, 17, 18, 21, 26], "what": [0, 2, 4, 5, 9, 14, 16, 23, 26], "wheeler": 0, "when": [0, 1, 6, 9, 17, 19, 20, 21, 23, 27], "where": [0, 2, 10, 14, 17, 20, 25], "wherea": [16, 21], "whether": [0, 6, 8, 17, 21], "which": [0, 6, 7, 9, 10, 14, 15, 16, 17, 18, 19, 21], "while": [0, 9, 16, 19, 20], "white": [10, 16, 17, 20, 23], "white_list": [16, 20, 27], "whole": 17, "whom": 8, "whose": [11, 15, 17], "wide": 0, "width": [0, 10, 17], "willing": 4, "wise": [11, 17], "within": [3, 4, 16], "without": [3, 8, 11, 16, 22], "word": [0, 17, 20], "work": [1, 5, 6, 11, 18, 20, 23], "workflow": 26, "world": 0, "would": 16, "write": 3, "write_bif": 3, "writer": 3, "www": 3, "x": [0, 4, 5, 7, 14, 16, 18, 19], "x0": 0, "x1": 0, "x2": 0, "x3": 0, "x4": 0, "x5": 0, "xmlbif": 3, "xrai": [5, 9, 10, 11, 14, 16, 17, 22], "xtest": 11, "y": [4, 7, 14, 17], "y_min": 17, "ye": 16, "yet": [1, 16], "yi": 0, "yield": 14, "you": [0, 1, 2, 4, 6, 9, 10, 11, 20, 23, 25], "your": [2, 4, 6, 16, 21, 23, 26], "z": [4, 7, 14], "zero": [4, 17], "\u03b1": 19}, "titles": ["Working with Continous data", "Directed Acyclic Graphs", "Sponsor", "DataFrames", "Start with RAW data", "Inference", "Install from Pypi (pip)", "Introduction", "Licence", "Parameter learning", "Interactive plot", "Predict", "Quickstart", "Forward Sampling", "Causation", "Structure Scores", "Use Case Titanic", "bnlearn.bnlearn", "bnlearn.inference", "bnlearn.parameter_learning", "bnlearn.structure_learning", "Data Conversions", "Independence test", "BNLearn\u2019s Documentation", "Saving and Loading", "<no title>", "Topological sort", "Black and white lists"], "titleterms": {"": 23, "1": [4, 5, 9], "2": [4, 5, 9], "3": [4, 5], "A": 14, "The": 1, "acycl": [1, 16], "adjac": 21, "adjmat2dict": 21, "adjmat2vec": 21, "algorithm": [5, 7], "asia": 10, "attribut": 23, "augment": 14, "automat": 0, "b": 14, "base": [7, 14, 20], "bay": 14, "bayesian": [4, 7, 9], "bif": 3, "black": 27, "blog": 2, "bnlearn": [17, 18, 19, 20, 23], "build": 1, "c": 14, "case": 16, "causal": [1, 16], "causat": 14, "chi2": 14, "chow": 14, "cite": 2, "classifi": 7, "colab": 2, "color": 10, "comparison": 10, "comput": 16, "condit": [9, 16], "constraint": [7, 14], "content": 23, "contin": 0, "continu": [0, 23], "convers": 21, "cpd": [9, 16], "creat": [4, 6, 16], "custom": 16, "dag": [1, 3, 14], "dag2adjmat": 21, "data": [0, 4, 16, 21, 23], "datafram": 3, "dataset": [0, 16], "defin": 10, "depict": 14, "descript": [16, 17, 19], "detect": 14, "determin": 16, "differ": 10, "direct": [0, 1, 16], "discoveri": 7, "discret": 0, "distribut": [1, 9, 16], "document": 23, "domain": 16, "edg": 10, "environ": 6, "error": 6, "estim": 9, "exampl": [0, 4, 5, 9, 12, 14, 23], "exhaustivesearch": 14, "export": 3, "forward": 13, "from": [4, 6, 16], "function": 23, "gener": 1, "gibb": 13, "github": [2, 6], "graph": [1, 16, 26], "graphviz": 10, "ground": 10, "have": 16, "het": 10, "hillclimbsearch": 14, "how": 16, "ica": 0, "import": [3, 6, 16], "independ": 22, "indic": 23, "infer": [0, 1, 4, 5, 16, 18, 23], "instal": [6, 12, 23], "interact": 10, "introduct": 7, "its": 4, "joint": 1, "know": 16, "learn": [0, 4, 7, 9, 10, 14, 16, 20, 23], "licenc": 8, "likelihood": 9, "lingam": 0, "list": 27, "liu": 14, "load": 24, "local": 7, "make": 16, "manual": 0, "matrix": 21, "maximum": 9, "medic": 16, "medium": 2, "method": 0, "model": [0, 1], "naiv": 14, "naivebay": 14, "network": [4, 7, 10], "networkx": 10, "node": 10, "notebook": 2, "other": 23, "overview": 1, "own": 1, "packag": 2, "paramet": [0, 4, 9, 23], "parameter_learn": 19, "pc": 0, "perform": 4, "pip": 6, "plot": [10, 23], "predict": [11, 23], "probabl": [1, 9, 14, 16], "properti": 10, "prune": 14, "pypi": 6, "quick": 12, "quickstart": [12, 23], "raw": 4, "refer": [0, 2], "relat": 2, "represent": 1, "sampl": [13, 23], "save": 24, "score": [7, 15, 20], "set": 4, "short": 12, "signific": 14, "size": 10, "sort": 26, "specifi": 1, "sponsor": 2, "sprinkler": 4, "start": 4, "static": 10, "structur": [0, 4, 7, 14, 15, 16, 20, 23], "structure_learn": 20, "tabl": 23, "tan": 14, "test": [14, 22], "theori": 14, "titan": 16, "topolog": 26, "tree": 14, "truth": 10, "two": 10, "uninstal": 6, "unsort": 26, "us": [14, 16], "user": 10, "valid": 6, "vec2adjmat": 21, "vec2df": 21, "vector": 21, "versu": 10, "when": 16, "white": 27, "without": 14, "work": 0, "you": 16, "your": 1}}) \ No newline at end of file +Search.setIndex({"alltitles": {"Adjacency matrix": [[21, "adjacency-matrix"]], "Asia ground truth network versus the learned network.": [[10, "id5"]], "BNLearn\u2019s Documentation": [[23, null]], "Bayesian Parameter Estimation": [[9, "bayesian-parameter-estimation"]], "Bayesian network classifiers": [[7, "bayesian-network-classifiers"]], "Black and white lists": [[27, null]], "Building a causal DAG": [[1, "building-a-causal-dag"]], "Causation": [[14, null]], "Chow-Liu. (A) Detected DAG. (B) DAG pruned on significance.": [[14, "id3"]], "Chow-liu": [[14, "chow-liu"]], "Citing": [[2, "citing"]], "Colab Notebook": [[2, "colab-notebook"]], "Comparison of two networks": [[10, "comparison-of-two-networks"]], "Compute Conditional Probability Distributions (CPDs)": [[16, "compute-conditional-probability-distributions-cpds"]], "Compute Directed Acyclic Graph from data": [[16, "compute-directed-acyclic-graph-from-data"]], "Conditional Probability Distributions (CPD)": [[9, "conditional-probability-distributions-cpd"]], "Constraint-based": [[14, "constraint-based"]], "Constraint-based structure learning algorithms": [[7, "constraint-based-structure-learning-algorithms"]], "Constraint-based. (A) Detected DAG. (B) DAG depicting significance.": [[14, "id6"]], "Contents": [[23, "contents"]], "Continuous Data": [[23, null]], "Create a Bayesian Network, learn its parameters from data and perform the inference": [[4, "create-a-bayesian-network-learn-its-parameters-from-data-and-perform-the-inference"]], "Create a custom Directed Acyclic Graph": [[16, "create-a-custom-directed-acyclic-graph"]], "Create environment": [[6, "create-environment"]], "Data Conversions": [[21, null]], "DataFrames": [[3, null]], "Description": [[16, "description"], [17, "description"], [17, "id1"], [17, "id2"], [17, "id3"], [19, "description"], [19, "id1"]], "Determine causalities when you have data": [[16, "determine-causalities-when-you-have-data"]], "Differences in het edges.": [[10, "id6"]], "Direct-LiNGAM method": [[0, "direct-lingam-method"]], "Directed Acyclic Graphs": [[1, null]], "Discretize continuous datasets automatically": [[0, "discretize-continuous-datasets-automatically"]], "Discretize continuous datasets manually": [[0, "discretize-continuous-datasets-manually"]], "Documentation": [[23, null]], "Edge properties": [[10, "edge-properties"]], "Example (1)": [[4, "example-1"], [5, "example-1"], [9, "example-1"]], "Example (2)": [[4, "example-2"], [5, "example-2"], [9, "example-2"]], "Example (3)": [[4, "example-3"], [5, "example-3"]], "Examples": [[23, null]], "Examples Inference": [[5, "examples-inference"]], "Examples Parameter learning": [[9, "examples-parameter-learning"]], "Exhaustivesearch": [[14, "exhaustivesearch"]], "Exhaustivesearch example": [[14, "id1"]], "Export DAG/BIF": [[3, "export-dag-bif"]], "Forward Sampling": [[13, null]], "Gibbs Sampling": [[13, "gibbs-sampling"]], "Github": [[2, "github"]], "Hillclimbsearch": [[14, "hillclimbsearch"]], "Hillclimbsearch. (A) Detected DAG. (B) DAG with significance. (C) DAG pruned.": [[14, "id2"]], "ICA-LiNGAM method": [[0, "ica-lingam-method"]], "Import DAG/BIF": [[3, "import-dag-bif"]], "Import Error": [[6, "import-error"]], "Import data": [[16, "import-data"]], "Independence test": [[22, null], [22, "id1"]], "Indices and tables": [[23, "indices-and-tables"]], "Inference": [[5, null], [23, null]], "Inference Algorithms": [[5, "inference-algorithms"]], "Inference on the causal generative model": [[1, "inference-on-the-causal-generative-model"]], "Inferences": [[0, "inferences"]], "Install from Pypi (pip)": [[6, null]], "Install from github": [[6, "install-from-github"]], "Installation": [[23, null]], "Installation (short)": [[12, "installation-short"]], "Interactive plot": [[10, null]], "Introduction": [[7, null]], "Learned structure on the Sprinkler data set.": [[4, "id1"]], "Learned structure on the Titanic dataset.": [[16, "id1"]], "LiNGAM Example": [[0, "lingam-example"]], "Licence": [[8, null]], "Local discovery algorithms": [[7, "local-discovery-algorithms"]], "Make inference when you have data": [[16, "make-inference-when-you-have-data"]], "Make inferences": [[16, "make-inferences"]], "Make inferences when you have data and know-how": [[16, "make-inferences-when-you-have-data-and-know-how"]], "Maximum Likelihood Estimation": [[9, "maximum-likelihood-estimation"]], "Medium Blog": [[2, "medium-blog"]], "Modelling Continuous Datasets": [[0, "modelling-continuous-datasets"]], "NaiveBayes": [[14, "naivebayes"]], "Naivebayes Example without and with pruning using chi2 test": [[14, "id5"]], "Node properties": [[10, "node-properties"]], "Other functionalities": [[23, null]], "Overview": [[1, "overview"]], "PC method": [[0, "pc-method"]], "Parameter learning": [[0, "parameter-learning"], [4, "parameter-learning"], [9, null], [23, null]], "Parameters and attributes": [[23, null]], "Plot": [[23, null]], "Plot with GraphViz": [[10, "id3"], [10, "id4"]], "Plot with node-colors": [[10, "id1"]], "Plot with user defined edge properties.": [[10, "id8"]], "Plot with user defined node colors and node sizes.": [[10, "id2"]], "Plot with user defined node properties.": [[10, "id7"]], "Predict": [[11, null], [23, null]], "Probability theory": [[14, "probability-theory"]], "Quick Examples": [[12, "quick-examples"]], "Quickstart": [[12, null], [23, null]], "References": [[0, "references"], [2, "references"]], "Related Packages": [[2, "related-packages"]], "Sampling": [[23, null]], "Saving and Loading": [[24, null]], "Score-based Structure Learning": [[20, "score-based-structure-learning"]], "Score-based algorithms": [[7, "score-based-algorithms"]], "Sorted graph": [[26, "id2"]], "Specifying the probability distributions on your own": [[1, "specifying-the-probability-distributions-on-your-own"]], "Sponsor": [[2, null]], "Start with RAW data": [[4, null]], "Static plot (graphviz)": [[10, "static-plot-graphviz"]], "Static plot (networkx)": [[10, "static-plot-networkx"]], "Structure Learning algorithms": [[7, "structure-learning-algorithms"]], "Structure Scores": [[15, null]], "Structure learning": [[0, "structure-learning"], [4, "structure-learning"], [14, "structure-learning"], [23, null]], "The causal DAG as a generative representation of joint probability": [[1, "the-causal-dag-as-a-generative-representation-of-joint-probability"]], "Topological sort": [[26, null]], "Tree-augmented Naive Bayes (TAN)": [[14, "tree-augmented-naive-bayes-tan"]], "Tree-augmented Naive Bayes. (A) Detected DAG. (B) DAG depicting significance. (C) DAG pruned.": [[14, "id4"]], "Uninstall": [[6, "uninstall"]], "Unsorted graph": [[26, "id1"]], "Use Case Medical domain": [[16, "use-case-medical-domain"]], "Use Case Titanic": [[16, null]], "Validate": [[6, "validate"]], "Vector": [[21, "vector"]], "Working with Continous data": [[0, null]], "adjmat2dict": [[21, "adjmat2dict"]], "adjmat2vec": [[21, "adjmat2vec"]], "bnlearn.bnlearn": [[17, null]], "bnlearn.inference": [[18, null]], "bnlearn.parameter_learning": [[19, null]], "bnlearn.structure_learning": [[20, null]], "dag2adjmat": [[21, "dag2adjmat"]], "vec2adjmat": [[21, "vec2adjmat"]], "vec2df": [[21, "vec2df"]]}, "docnames": ["Continuous Data", "Create DAG", "Documentation", "Example Datasets", "Examples", "Inference", "Installation", "Introduction", "Licence", "Parameter learning", "Plot", "Predict", "Quickstart", "Sampling", "Structure learning", "Structure_scores", "UseCases", "bnlearn.bnlearn", "bnlearn.inference", "bnlearn.parameter_learning", "bnlearn.structure_learning", "dataframe conversions", "independence_test", "index", "saving and loading", "sponsor", "topological_sort", "whitelist_blacklist"], "envversion": {"sphinx": 62, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1}, "filenames": ["Continuous Data.rst", "Create DAG.rst", "Documentation.rst", "Example Datasets.rst", "Examples.rst", "Inference.rst", "Installation.rst", "Introduction.rst", "Licence.rst", "Parameter learning.rst", "Plot.rst", "Predict.rst", "Quickstart.rst", "Sampling.rst", "Structure learning.rst", "Structure_scores.rst", "UseCases.rst", "bnlearn.bnlearn.rst", "bnlearn.inference.rst", "bnlearn.parameter_learning.rst", "bnlearn.structure_learning.rst", "dataframe conversions.rst", "independence_test.rst", "index.rst", "saving and loading.rst", "sponsor.rst", "topological_sort.rst", "whitelist_blacklist.rst"], "indexentries": {"adjmat2dict() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.adjmat2dict", false]], "adjmat2vec() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.adjmat2vec", false]], "bnlearn.bnlearn": [[17, "module-bnlearn.bnlearn", false]], "bnlearn.bnlearn.structure_scores": [[15, "module-bnlearn.bnlearn.structure_scores", false]], "bnlearn.inference": [[18, "module-bnlearn.inference", false]], "bnlearn.parameter_learning": [[19, "module-bnlearn.parameter_learning", false]], "bnlearn.structure_learning": [[20, "module-bnlearn.structure_learning", false]], "check_model() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.check_model", false]], "compare_networks() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.compare_networks", false]], "dag2adjmat() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.dag2adjmat", false]], "df2onehot() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.df2onehot", false]], "fit() (in module bnlearn.inference)": [[18, "bnlearn.inference.fit", false]], "fit() (in module bnlearn.parameter_learning)": [[19, "bnlearn.parameter_learning.fit", false]], "fit() (in module bnlearn.structure_learning)": [[20, "bnlearn.structure_learning.fit", false]], "get_edge_properties() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.get_edge_properties", false]], "get_node_properties() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.get_node_properties", false]], "import_dag() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.import_DAG", false]], "import_example() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.import_example", false]], "independence_test() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.independence_test", false]], "load() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.load", false]], "make_dag() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.make_DAG", false]], "module": [[15, "module-bnlearn.bnlearn.structure_scores", false], [17, "module-bnlearn.bnlearn", false], [18, "module-bnlearn.inference", false], [19, "module-bnlearn.parameter_learning", false], [20, "module-bnlearn.structure_learning", false]], "plot() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.plot", false]], "plot_graphviz() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.plot_graphviz", false]], "predict() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.predict", false]], "print_cpd() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.print_CPD", false]], "query2df() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.query2df", false]], "sampling() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.sampling", false]], "save() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.save", false]], "structure_scores() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.structure_scores", false]], "to_bayesiannetwork() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.to_bayesiannetwork", false]], "to_undirected() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.to_undirected", false]], "topological_sort() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.topological_sort", false]], "vec2adjmat() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.vec2adjmat", false]], "vec2df() (in module bnlearn.bnlearn)": [[17, "bnlearn.bnlearn.vec2df", false]]}, "objects": {"bnlearn": [[17, 0, 0, "-", "bnlearn"], [18, 0, 0, "-", "inference"], [19, 0, 0, "-", "parameter_learning"], [20, 0, 0, "-", "structure_learning"]], "bnlearn.bnlearn": [[17, 1, 1, "", "adjmat2dict"], [17, 1, 1, "", "adjmat2vec"], [17, 1, 1, "", "check_model"], [17, 1, 1, "", "compare_networks"], [17, 1, 1, "", "dag2adjmat"], [17, 1, 1, "", "df2onehot"], [17, 1, 1, "", "get_edge_properties"], [17, 1, 1, "", "get_node_properties"], [17, 1, 1, "", "import_DAG"], [17, 1, 1, "", "import_example"], [17, 1, 1, "", "independence_test"], [17, 1, 1, "", "load"], [17, 1, 1, "", "make_DAG"], [17, 1, 1, "", "plot"], [17, 1, 1, "", "plot_graphviz"], [17, 1, 1, "", "predict"], [17, 1, 1, "", "print_CPD"], [17, 1, 1, "", "query2df"], [17, 1, 1, "", "sampling"], [17, 1, 1, "", "save"], [17, 1, 1, "", "structure_scores"], [15, 0, 0, "-", "structure_scores"], [17, 1, 1, "", "to_bayesiannetwork"], [17, 1, 1, "", "to_undirected"], [17, 1, 1, "", "topological_sort"], [17, 1, 1, "", "vec2adjmat"], [17, 1, 1, "", "vec2df"]], "bnlearn.inference": [[18, 1, 1, "", "fit"]], "bnlearn.parameter_learning": [[19, 1, 1, "", "fit"]], "bnlearn.structure_learning": [[20, 1, 1, "", "fit"]]}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "function", "Python function"]}, "objtypes": {"0": "py:module", "1": "py:function"}, "terms": {"": [0, 4, 9, 12, 13, 14, 16, 17, 19, 22], "0": [0, 1, 3, 4, 5, 9, 10, 11, 13, 14, 16, 17, 18, 19, 20, 21, 22, 26], "00": [16, 22], "000": 16, "00000": 0, "000000": [0, 10, 17], "000000e": 22, "0001": 20, "0030": 5, "01": [1, 9, 14], "010043": 0, "012": 9, "01302897644361059": 16, "02465e": 14, "0296": 11, "03": 14, "0335e": 14, "0336": 9, "0345358": 14, "05": [0, 14, 16, 17], "0517": 11, "05333333333333334": 16, "0537": 9, "05457492795389049": 16, "0546": 16, "055": 9, "0555455": 16, "057757": 0, "06": 14, "061629": 17, "061758": 22, "062": 14, "0673": 14, "06818e": 14, "070": 9, "0700": 5, "0750711093051605": 16, "075377e": 22, "07736e": 14, "0797": 16, "080606e": 17, "08061e": 14, "08089070665757782": 16, "08396533044420368": 16, "09": 14, "09174e": 14, "09528": 14, "097": 14, "0f0f0f0f": [10, 17], "0x10": 6, "0xf": 6, "1": [0, 1, 3, 6, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26], "10": [0, 4, 6, 9, 10, 14, 16, 17, 19], "100": [0, 13, 14, 16, 17, 20], "1000": [0, 5, 9, 11, 13, 16, 17, 19, 26], "10000": [4, 9, 10, 16, 17, 20], "1000000": 20, "1007": 14, "10273": 14, "104413": 14, "107": 21, "1092": 16, "11": [0, 14, 16], "1101": 20, "1118": 14, "119": 0, "12": [0, 14], "120": 0, "12147716229348882": 0, "12156934978817462": 16, "1219": 14, "122": 14, "12209": 14, "12278": 14, "123": 9, "12439261418853255": 0, "12510": 14, "125939": 14, "12841": 14, "13": 14, "130": 0, "132": 9, "1327": 0, "13313896987366375": 0, "1342": 14, "135": 0, "1358": 0, "138348623853211": 16, "13913362701908957": 16, "14": [10, 14], "140": 0, "14150": 14, "1423": 5, "14283": 14, "143": 16, "1441": 14, "14it": 16, "15": [0, 10, 14, 17], "150": 0, "1500": 17, "1509": 22, "1510": 0, "152": 14, "15374": 14, "1540": 0, "15664": 14, "157": 14, "15718": 14, "15723270440251572": 16, "1577": 0, "16": [0, 14], "1601": 0, "161": 14, "1625": 9, "165": 0, "1683": 14, "17": [0, 14], "1720": 16, "18": [0, 14], "1810": 14, "1813": 14, "19": [0, 14], "1956": 14, "196919e": 17, "19692e": 14, "197": 22, "19727891156462582": 0, "198": 14, "1988": 16, "1e": 20, "1e6": 20, "2": [0, 1, 3, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26], "20": [14, 17], "200": [16, 17], "2000": 10, "2001": 16, "2009": 2, "2015": 0, "2016": 20, "2020": 8, "2083": 14, "21": [0, 14], "211": 14, "212": 9, "217": 14, "21789354473386183": 16, "22": 14, "2217": 0, "2221": 14, "2246": 14, "226": 14, "22837370242214533": 16, "23": [14, 17], "230": 9, "2315": 16, "233": [14, 17], "23487544483985764": 16, "2370": 16, "24": [0, 6, 9, 14], "240783": 14, "243": 14, "2446183953033268": 4, "247": 14, "2489v3": 20, "24919093851132687": 16, "25": [0, 9, 10, 14], "250": 17, "253731": 16, "25588235": 4, "25588235294117645": 4, "2559": 4, "26": 14, "265": 14, "2665": 0, "2665330661322645": 16, "26it": 16, "27": [0, 14], "28": [0, 14], "282": 14, "2834": 14, "285": [9, 14, 17], "286": 16, "29": [9, 14], "2924901185770751": 4, "294": 14, "2959": 0, "2970": 5, "2986": 11, "29931972789115646": 0, "2nd": 2, "2x": 17, "3": [0, 1, 6, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26], "30": [14, 17], "300": 14, "3000": 0, "30164": 14, "302": 0, "304": 0, "307": 0, "308": 14, "31": [0, 14], "3114": 16, "3114193083573487": 16, "31675675675675674": 16, "318": 0, "319": 9, "31it": 16, "32": [0, 14], "325": 22, "33": [9, 14], "3312": 4, "331202": 16, "334": 16, "33695652173913043": 4, "33755274261603374": 4, "338": 16, "34": [9, 14], "34186": 14, "343": 14, "3481781376518219": 4, "34994e": 14, "35": [10, 14, 17], "350": 0, "351123595505618": 16, "352": 21, "357": 9, "36": 14, "36195e": 14, "362": 22, "365291": 16, "3657": 0, "36791e": 14, "368132": 16, "37": [9, 14], "37291e": 14, "378980": 22, "37910447761194027": 4, "38": 14, "38104089219330856": 16, "382": 14, "382504": 14, "383708e": 17, "38371e": 14, "387": [0, 14], "388": 0, "389": 0, "39": 14, "390": 0, "391": 0, "392": 0, "3926": 14, "394": [14, 17], "39908256880733944": 16, "4": [0, 4, 9, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 26], "40": 14, "401": 16, "4063876651982379": 16, "406634": 16, "409": 14, "41": 14, "413": 9, "414": 9, "4154": 14, "418": 9, "42": 14, "4253": 14, "43": 14, "4324": 21, "434": 14, "438": 20, "44": [0, 14], "444573": 16, "4446": 16, "4453": 14, "45": [14, 16], "45141e": 14, "4592": 16, "46": [0, 14], "4619": 22, "4643": 14, "46798": 14, "47": 14, "47192626": 17, "4737": 14, "476625": 14, "478": 14, "478455": 17, "47it": 16, "48": [9, 14, 20], "4800": 14, "4807692307692308": 4, "488032": 11, "49": [14, 16], "49019607843137253": 16, "492": 9, "49263": 14, "494": [4, 9], "495273": 16, "495455": 16, "498": 9, "5": [0, 1, 9, 14, 16, 17, 18, 19, 20, 21, 22, 26], "50": [9, 10, 14, 17, 19], "500000": 16, "501": 9, "504545": 16, "504727": 16, "506": [4, 9], "507": 9, "5098039215686274": 16, "50it": 16, "51": [9, 14, 16], "5113": 16, "5140": 0, "5192307692307693": 4, "52": 14, "522990": 22, "5240": 14, "53": [14, 17], "54": 14, "540506": 16, "542258e": 22, "5444": 14, "544772": 11, "5455": 22, "5476": 14, "548197": 14, "5554": 16, "555427": 16, "55643e": 14, "5589": 14, "5639": 14, "581": 9, "5828": 14, "585": 9, "586": 9, "59": 14, "593366": 16, "5936123348017621": 16, "6": [0, 10, 14, 16, 21, 22, 26], "60": 10, "600": 17, "6009174311926605": 16, "601286": 22, "604230": 17, "61": 14, "6157": 14, "6189591078066915": 16, "62": [9, 11, 14], "620068": 11, "6201": 11, "6208955223880597": 4, "624": 0, "63": 5, "6300": 5, "631868": 16, "634709": 16, "63681": 14, "64": [14, 17], "642": 9, "6421": 14, "6471e": 14, "647249": 17, "648876404494382": 16, "65": [0, 9], "6518218623481782": 4, "65747e": 14, "66": 9, "6624472573839663": 4, "6630434782608695": 4, "668798": 16, "6688": 4, "67": [14, 16], "68": 16, "680": 9, "6832432432432433": 16, "6848": 14, "6885806916426513": 16, "6886": 16, "694": 14, "696": 14, "7": [1, 14, 16], "70": [0, 9, 10], "70391e": 14, "704964": 0, "7075098814229249": 4, "7081": 14, "71": 14, "711": 14, "7126": 14, "714": 9, "714624": 14, "7179": 14, "71824": 14, "726744e": 22, "729663": 22, "73": [0, 14, 22], "7334669338677354": 16, "74": 9, "741": 14, "7441": 4, "7441176470588236": 4, "74411765": 4, "746269": 16, "75": [9, 14], "7508090614886731": 16, "7553816046966731": 4, "75631e": 14, "76": 14, "761": 14, "7651245551601423": 16, "766384": 14, "7693": 9, "7716262975778547": 16, "7821064552661382": 16, "787": 9, "8": [0, 1, 9, 10, 12, 14, 16, 17, 22], "80": 4, "800": 17, "800px": 10, "81": 22, "817192": 22, "82": 0, "82344e": 14, "8306": 14, "8340": 22, "837": 9, "8427672955974843": 16, "8450": 14, "85": 14, "8577": 5, "8604": 14, "8608663729809104": 16, "861651376146789": 16, "867": 9, "87": [14, 17], "872": 14, "876": 9, "878049": 17, "8784306502118254": 16, "886511e": 17, "88651e": 14, "899": 22, "8_850": 14, "8a0707": [10, 17], "9": [0, 1, 5, 9, 14, 16], "9000": 5, "901702": 17, "902": 14, "906": 14, "90616e": 14, "906474": 17, "91": 14, "915306": 0, "9159": 14, "9160346695557963": 16, "9191092933424222": 16, "92": 14, "9205": 14, "9249288906948395": 16, "926593": 22, "929": 9, "94": 16, "944": 9, "944455": 16, "9454": 16, "9454250720461095": 16, "9462": 9, "9466666666666667": 16, "9573": 14, "959": 14, "964": 14, "96588": 14, "9663": 9, "97": 0, "971198": 0, "974": 14, "978": 14, "979": 14, "985": 14, "98564": 0, "9869710235563894": 16, "987": 9, "987320": 0, "99": [1, 9], "995": 11, "996": 11, "99624": 0, "997": 11, "998": [3, 11, 17], "999": [3, 11, 17], "999112": 0, "9995": 11, "9996": 11, "9997": 11, "9998": 11, "9999": [11, 16], "A": [0, 2, 4, 8, 9, 15, 16, 17, 19, 20, 21, 23, 26], "AND": 8, "AS": 8, "As": [0, 4, 14, 16, 26], "At": [0, 16], "BE": 8, "BUT": 8, "But": [5, 10, 14, 18], "By": [0, 10, 17], "FOR": 8, "For": [0, 1, 4, 9, 14, 16, 17, 18, 19, 21, 22], "IN": 8, "If": [1, 2, 6, 9, 14, 16, 17, 18, 19, 20, 27], "In": [0, 1, 6, 9, 10, 11, 13, 14, 16, 20, 21, 26], "It": [0, 12, 13, 14, 20, 26], "NO": 8, "NOT": 8, "No": [1, 4, 16], "OF": 8, "OR": 8, "One": [9, 17, 19], "Or": [0, 17, 20], "Such": 14, "THE": 8, "TO": 8, "The": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27], "Then": 16, "There": [0, 1], "These": 5, "To": [0, 1, 4, 6, 9, 10, 11, 14, 16, 19, 20, 21], "WITH": 8, "With": [0, 3, 4, 7, 11, 14], "_": 4, "_other_": 17, "_str": 4, "ab": 20, "about": [1, 9, 14, 16, 19], "abov": [0, 4, 8, 10, 17, 20, 21], "absenc": 16, "absent": 6, "absolut": 17, "acceler": 0, "accomplish": 0, "accord": [0, 9, 14, 19], "accordingli": 17, "achiev": [7, 9, 19], "across": [1, 4, 10, 16, 21], "act": 0, "action": 8, "activ": [6, 12], "actual": [1, 4, 9, 13, 17, 19, 26], "acur": 0, "acycl": [0, 9, 14, 17, 20, 23, 26], "acyclid": 0, "ad": [9, 19], "add": [9, 10, 16, 19, 20], "add8e6": 17, "addit": [15, 17], "adjac": [4, 17, 19, 20, 23], "adjmat": [0, 4, 12, 17, 19, 20, 21], "adjmat2dict": [17, 23], "adjmat2vec": [17, 23], "adjmat_dict": 21, "adjmat_diff": 17, "adjust": [4, 10, 17, 20], "advantag": 0, "advic": 16, "advis": 12, "after": [0, 4, 27], "ag": 0, "again": [0, 1, 6, 9], "against": [6, 15, 17], "aggfunc": 17, "aggreg": 17, "aic": 20, "aim": [14, 16], "aka": 14, "akt": 21, "al": [0, 20], "alarm": [3, 9, 14, 16, 17, 19], "algorithm": [0, 14, 18, 20, 23, 26], "all": [0, 5, 6, 7, 8, 9, 10, 11, 14, 16, 17, 18, 19, 20, 24], "allan": 0, "allow": [0, 5, 10, 16, 18, 20], "along": 1, "alpha": [10, 14, 17], "alreadi": [4, 9, 19], "also": [0, 2, 4, 13, 14, 16, 20, 25, 26], "altern": 17, "alwai": [14, 20], "among": [0, 7, 9, 14, 19, 20], "an": [0, 1, 4, 6, 7, 8, 9, 11, 14, 16, 17, 19, 20, 21, 22, 26], "analys": 16, "analysi": [0, 2, 23, 26], "anaphylaxi": 14, "andes": [3, 9, 17], "ani": [0, 1, 3, 8, 9, 14, 15, 16, 17, 20, 22, 26, 27], "anoth": [0, 4, 13, 16, 26], "api": 6, "appendix": 3, "appli": 0, "applic": [16, 26], "apply_prior_knowledge_softli": 20, "approach": [0, 2, 4, 7, 14, 16, 20, 21], "approxim": [5, 14], "ar": [0, 1, 4, 6, 7, 9, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 26, 27], "arc": [17, 26], "argument": 6, "aris": 8, "ark": 21, "arrai": [0, 4, 17, 26], "arround": [16, 21], "arrow": [14, 16], "arrows": [10, 17], "arrowstyl": [10, 17], "artco2": 14, "arxiv": 20, "asia": [3, 4, 5, 9, 11, 14, 16, 17, 20, 22, 24], "ask": [4, 9, 16, 18], "aspect": 17, "ass": 11, "asses": 17, "assess": 0, "assign": 14, "associ": [8, 17, 22], "associaton": 16, "assum": [0, 1, 20], "assumpt": [0, 1, 14], "attach": 1, "attempt": 17, "attract": 14, "attribut": 14, "augment": [7, 20, 23], "author": 8, "auto": 0, "auto_mpg": [0, 17, 20], "automat": [22, 23], "automot": 0, "avail": [0, 7, 11, 17, 21], "avoid": [5, 14, 18], "awai": 14, "b": [17, 20], "back": 21, "base": [0, 4, 10, 11, 13, 15, 16, 17, 21, 22, 23], "basi": 1, "basic": [5, 16, 18], "bay": [3, 7, 13, 16, 17, 19, 20, 23], "bayasian": 16, "bayesian": [0, 1, 2, 3, 8, 11, 13, 14, 15, 16, 17, 19, 20, 23, 26], "bayesiannetwork": [15, 17], "bd": [15, 17, 20], "bdeu": [4, 7, 9, 14, 15, 17, 19, 20], "bdeuscor": [15, 17], "bdsscore": [15, 17], "becaus": [0, 1, 6, 9, 10, 14, 16, 21], "becom": [0, 2, 14, 16, 25], "been": 14, "befor": [0, 9, 14, 19, 26], "being": 16, "belief": [5, 9, 14, 19], "below": [10, 11, 14, 16, 17, 21], "benefit": 23, "best": [0, 14, 16], "better": [1, 15, 17, 20], "between": [0, 1, 4, 7, 9, 10, 11, 14, 16, 17, 20, 21], "bgcolor": [10, 17], "bia": 0, "bibtex": 2, "bic": [0, 4, 7, 10, 14, 15, 16, 17, 19, 20], "bicscor": [15, 17], "bif": [7, 9, 17, 19, 23], "bif_fil": 3, "bifwrit": 3, "bin": 0, "bipartite_layout": 17, "bitcoin": [2, 25], "black": [16, 20, 23], "black_list": [14, 16, 20, 27], "block": 20, "blog": 23, "bn": [0, 3, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 26], "bnlearn": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 21, 22, 24, 26, 27], "bnlearn_model": [17, 24], "book": 21, "bool": [17, 18, 20], "boolean": [11, 14, 18], "both": [0, 4, 7, 9, 14, 16, 20], "boundari": 0, "bp": 14, "brain": 16, "breath": 16, "bring": [4, 9], "broad": 20, "bronc": [9, 10, 11, 14, 16, 22], "bronchiti": 16, "bronchitu": 16, "brows": 14, "bug": [2, 23, 25], "bui": [2, 25], "build": [0, 3, 4, 14, 20, 23], "bw_list_method": [14, 16, 20, 27], "c": [3, 4, 6, 7, 8, 17, 20], "call": [1, 6, 9, 14, 19, 20], "can": [0, 1, 2, 3, 4, 6, 7, 9, 10, 11, 14, 15, 16, 17, 19, 20, 21, 23, 24, 25, 26], "cancer": [5, 16], "captur": [0, 7, 14, 20], "car": 0, "carlo": 14, "cascad": 14, "case": [0, 1, 4, 6, 10, 11, 14, 17, 20, 23], "cat": 17, "catagor": 0, "catagori": [16, 17, 18], "catechol": 14, "categor": [0, 4, 7, 14], "categori": [0, 5], "caus": [0, 9, 14, 19], "causal": [0, 2, 14, 17, 23], "causal_ord": 0, "causal_order_": 0, "causat": [2, 23], "certain": 20, "chain": 14, "challang": 0, "chanc": 16, "chang": [10, 14, 17, 20], "charg": 8, "check": [6, 9, 14, 16, 17], "check_model": [17, 23], "checkmodel": [14, 17], "checkout": 6, "cheer": [2, 25], "chen": 0, "chest": 16, "chi": [14, 20, 22], "chi2": [0, 4, 7], "chi_squar": [0, 10, 14, 16, 17, 22], "choic": [9, 19], "choos": [9, 16, 19], "chosen": 0, "chow": [7, 20, 23, 26], "chun": 0, "circular_layout": 17, "cite": 23, "cl": [7, 14, 16, 20], "claim": 8, "clark": 0, "class": [14, 17, 20], "class_nod": [14, 20, 24], "classif": 14, "classifi": 23, "click": 6, "climb": 7, "cliqu": 5, "close": [0, 9], "closer": 9, "cloud": [9, 19], "cloudi": [1, 3, 4, 5, 9, 12, 13, 14, 15, 17, 18, 19, 21], "cmk": 1, "co": 14, "code": [2, 3, 17], "coeffici": 17, "coffe": [2, 25], "colab": [6, 23], "collect": 17, "color": 17, "colum": 17, "column": [0, 16, 17], "com": [0, 6, 17], "combin": [10, 14, 16, 20], "come": 10, "common": [0, 3, 5, 14], "commonli": [9, 14, 19, 20], "commun": 3, "compar": [2, 4, 7, 10, 15, 16, 17, 20, 23], "compare_network": [4, 10, 12, 16, 17, 20, 23], "comparison": [4, 16, 22, 23], "compel": 0, "compil": 6, "complet": [0, 7], "complex": [4, 9, 14, 16], "complic": 16, "compon": [7, 14], "comput": [0, 4, 5, 7, 9, 10, 14, 15, 17, 18, 20, 22], "concept": [5, 18], "conceptu": 14, "conda": [6, 12], "condit": [0, 1, 5, 7, 8, 14, 18, 19, 20, 23], "condition": [9, 19], "conduct": 0, "config": 20, "configur": [9, 19, 20], "connect": [1, 4, 7, 8, 13, 14, 16, 17, 21], "conserv": 0, "consid": [0, 1, 17], "consist": [0, 9, 11, 14, 17, 19], "consol": 6, "constant": 14, "constraint": [0, 4, 20, 23, 26], "constraintsearch": [4, 7, 20], "construct": [0, 7, 14, 16], "contain": [0, 3, 4, 7, 9, 10, 14, 16, 17, 18, 19, 20, 21, 23, 27], "contan": 17, "context": [0, 16, 26], "contin": [17, 23], "continu": [4, 20], "continuous_column": 0, "contract": 8, "contrast": 0, "contribut": [0, 2, 25], "control": 17, "convers": [0, 7, 23], "convert": [4, 16, 17, 18, 21, 27], "cool": 16, "coordin": 17, "copi": 8, "copyright": 8, "core": 6, "correct": [0, 16], "correl": 2, "correspond": [0, 1, 14], "count": [9, 19, 20], "cpd": [0, 1, 4, 11, 12, 13, 14, 17, 19, 23], "cpd_a": 14, "cpd_b": 14, "cpd_c": 14, "cpd_d": 14, "cpt": [1, 9], "cpt_cloudi": 1, "cpt_rain": 1, "cpt_sprinkler": 1, "cpt_wet_grass": 1, "creat": [0, 1, 3, 5, 10, 11, 12, 13, 14, 17, 21, 23, 26], "cressie_read": 17, "criterion": [7, 14, 20], "critic": 26, "cs228": 14, "current": [9, 15, 16, 17, 19], "custom": 17, "cut": 0, "cvp": 14, "cycl": [17, 26], "cylind": 0, "d": [6, 14, 16, 17, 20], "d3block": 10, "dag": [0, 4, 7, 9, 10, 11, 12, 13, 15, 16, 17, 19, 20, 21, 22, 23, 26], "dag2adjmat": [17, 23], "dag_edg": 27, "dag_nod": 27, "dag_tru": 9, "dag_upd": 9, "dagmodel": 17, "dai": 16, "damag": 8, "data": [1, 2, 5, 7, 9, 10, 11, 12, 13, 14, 17, 18, 19, 20, 22, 24, 26, 27], "datafram": [0, 4, 9, 11, 15, 16, 17, 18, 19, 20, 21, 23], "dataset": [2, 3, 4, 5, 9, 10, 11, 13, 14, 15, 17, 20, 22, 23, 27], "deadlock": 26, "deal": 8, "debug": [17, 18, 19, 20], "decept": 17, "decid": 26, "decis": 4, "deem": [9, 19], "deeper": [0, 9], "default": [4, 6, 10, 14, 17, 18, 19, 20], "defin": [0, 1, 4, 11, 13, 17, 20, 21, 22], "definit": 14, "demonstr": [0, 1, 4, 10, 11, 16, 21], "densiti": 7, "depend": [0, 1, 4, 7, 9, 14, 16, 17, 19, 20, 21], "dependend": 0, "depict": [0, 16, 17], "deriv": [3, 10, 14, 26], "describ": [0, 4, 9, 14, 16, 20], "descript": [0, 23], "design": [2, 14, 16, 23], "desir": [6, 9], "destin": 16, "detail": 18, "detect": [2, 17, 23, 26], "detect_cycl": 17, "determiend": 17, "determin": [14, 20, 23], "devdoc": 6, "df": [0, 3, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 26], "df2onehot": [4, 14, 16, 17, 23, 27], "df_disc": 0, "df_discret": 0, "df_raw": [4, 14, 27], "dfhot": [4, 14, 16, 27], "dfnum": [4, 14, 16, 27], "diagram": 14, "dict": [10, 16, 17, 18, 19, 20], "dict_kei": [9, 16], "dictionari": [15, 17, 21], "did": 16, "differ": [0, 1, 4, 9, 14, 15, 16, 17], "digit": [2, 25], "direct": [4, 7, 9, 14, 17, 20, 21, 23, 26], "directlingam": 20, "dirichlet": [7, 9, 14, 19, 20], "disadvantag": 0, "disconnect": 14, "discoveri": [0, 23], "discret": [1, 7, 9, 14, 16, 19, 20, 23], "discretez": 0, "discretize_valu": 0, "discrimin": 16, "discrit": 0, "discuss": [2, 14, 16, 25], "diseas": 16, "displac": 0, "disrupt": 0, "distribut": [0, 5, 7, 8, 13, 14, 17, 18, 19, 20, 23], "dit": 16, "divid": [0, 20], "dm": 3, "do": [0, 5, 8, 13, 16, 17, 18], "document": 8, "doe": [0, 2, 3, 7, 16, 21, 23], "doesn": [2, 15, 17], "dof": [14, 17, 22], "doi": 14, "domain": [0, 1, 14, 23], "donat": [2, 25], "done": [9, 19, 20, 26], "dot": [0, 14, 17], "dot_graph": 17, "dotgraph": [0, 17], "dotgraph_auto_mpg_lingam_direct": 0, "dotgraph_auto_mpg_lingam_ica": 0, "dotgraph_auto_mpg_pc": 0, "dpi": [14, 17], "draw": 0, "driven": [2, 23], "dtype": [0, 17], "due": 16, "dure": 6, "dysp": [9, 14, 16, 22], "dyspnoea": 16, "e": [0, 9, 14, 19], "each": [0, 1, 3, 4, 9, 11, 14, 15, 16, 17, 18, 19, 26], "easier": 22, "easili": [4, 10, 11, 17], "edg": [0, 1, 4, 7, 11, 13, 14, 15, 16, 17, 20, 21, 22, 23, 26, 27], "edge_alpha": [10, 17], "edge_label": [0, 14, 16, 17], "edge_properti": [10, 17], "edit": 2, "edu": 3, "educ": [2, 25], "effect": [14, 20], "effici": [0, 14], "either": [9, 10, 14, 16, 17, 22], "element": [2, 21], "elimin": [5, 16, 18], "elimination_ord": 18, "eliminationord": 18, "embark": [14, 16, 27], "empir": 20, "emploi": 14, "enabl": 18, "encod": [1, 9, 14, 19], "end": [0, 16], "enforc": 27, "enrich": 17, "ensur": [0, 20], "entir": [10, 11, 16, 17, 26], "env": 6, "env_bnlearn": [6, 12], "environ": [12, 17, 23], "epsilon": 20, "equal": 0, "equat": [14, 20], "equiprob": [9, 19], "equival": [7, 9, 14, 19, 20], "erdog": 6, "erdogan": 8, "erk": 21, "ermongroup": 14, "errcaut": 14, "errlowoutput": 14, "error": [0, 17, 18, 19, 20, 23], "especi": [16, 26], "establish": 0, "estim": [0, 1, 7, 14, 16, 19, 20, 23], "et": [0, 20], "etc": [4, 14], "evalu": 20, "even": [4, 9, 14, 16, 19], "event": 8, "everi": [9, 14, 19, 20], "evid": [0, 1, 4, 5, 11, 12, 14, 16, 17, 18], "evidence_card": [1, 14], "ex": [4, 7, 14, 20], "exact": [5, 18], "exact_inf": 18, "exactli": [0, 4, 11], "examin": [1, 14, 16, 17, 22, 26], "exampl": [1, 3, 6, 7, 10, 11, 13, 15, 16, 17, 18, 19, 20, 21, 22, 24, 26, 27], "except": [11, 17, 18], "exchang": 3, "excl_background": 17, "exclud": [0, 14, 16, 20, 27], "execut": 17, "exercis": [4, 9], "exhaust": [4, 14], "exhaustivesearch": [4, 7, 20, 23], "exhibit": 0, "exist": [0, 9, 14, 17, 19], "exit": 20, "expco2": 14, "expens": 4, "experi": 16, "experiment": 3, "expert": [4, 16], "expertis": 0, "explain": 1, "explanatori": 0, "exponenti": [14, 20], "export": [17, 23], "express": [8, 9, 19], "extend": 0, "extens": 23, "extract": [4, 9, 17, 21], "extremli": [9, 19], "facecolor": [10, 17], "fact": [9, 19], "factor": [0, 1, 5, 14, 16, 18], "fail": 6, "faith": 0, "fals": [0, 4, 9, 10, 14, 16, 17, 18, 19, 20, 21], "far": [9, 19], "fast": 14, "featur": [2, 14, 17, 23, 25], "feedback": [14, 26], "feel": 16, "few": [3, 14, 16], "ffffff": 17, "fig": 17, "figsiz": [14, 17], "figur": [0, 6, 10, 14, 17], "file": [3, 7, 8, 17, 19], "filenam": [0, 3, 17], "filepath": [3, 9, 17, 24], "fill": [9, 19], "filter": 20, "final": [4, 14, 20], "find": [5, 14, 16], "finit": 21, "fio2": 14, "first": [0, 1, 4, 6, 10, 11, 16], "fit": [0, 1, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 26, 27], "fix": 6, "fixed_edg": 20, "flag": [4, 14], "float": [0, 15, 17, 19, 20], "float64": 0, "focu": 23, "follow": [0, 1, 2, 6, 7, 8, 9, 10, 11, 14, 15, 16, 17, 20, 25, 26], "font_color": [10, 17], "font_famili": [10, 17], "font_siz": [10, 14, 17], "forc": [6, 17], "form": [2, 14, 16, 17, 21, 25], "format": 3, "formul": 14, "forward": [15, 17, 23], "found": [2, 3, 14, 15, 16, 17], "four": [11, 14, 15, 17], "fragil": [9, 19], "fragment": [9, 19], "frame": 0, "free": [8, 26], "freeman_tuckei": 17, "freez": 0, "frequenc": [0, 9, 19], "frequent": [9, 19], "from": [0, 1, 2, 3, 5, 8, 9, 10, 13, 14, 17, 18, 19, 20, 21, 22, 23, 27], "fuel": 0, "full": 21, "fulli": 7, "fun": 16, "funciton": 0, "function": [0, 2, 3, 4, 7, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 24], "fundament": 14, "furnish": 8, "further": [1, 3, 14], "furthermor": [0, 16], "g": [0, 3, 4, 6, 9, 10, 12, 14, 16, 17, 19, 20, 22, 26], "g_sq": 17, "gather": 17, "gaussian": [0, 20], "ge": 27, "gene": 21, "gener": [2, 9, 16, 17, 23, 26], "get": [1, 6, 14, 16, 17, 21], "get_cpd": 0, "get_edge_properti": [10, 17, 23], "get_node_properti": [10, 17, 23], "gf": 27, "gibb": [17, 23], "git": 6, "github": [0, 14, 23, 25], "give": [17, 26], "given": [0, 4, 5, 7, 9, 14, 16, 19, 20], "global": 14, "glue": 14, "go": [1, 2, 6, 11, 14, 25], "goal": [4, 16, 21, 22], "good": [0, 14], "gra": 5, "grammar": 26, "grant": 8, "graph": [0, 7, 9, 10, 14, 17, 20, 21, 23], "graphic": [1, 2, 8, 14, 16, 23], "graphviz": [0, 14, 17, 23], "graphviz_layout": 17, "grass": [1, 5], "great": [0, 1, 9], "greater": 20, "greedi": [4, 14, 18], "grid": [4, 14, 17], "ground": [4, 20], "group": [0, 17, 18], "groupbi": [17, 18], "guarante": 0, "guess": [9, 19], "guid": [2, 23], "ha": [0, 9, 14, 16, 19, 20, 26], "habbit": 0, "had": [11, 16], "hand": [0, 1], "handl": 16, "happen": 0, "hardwar": 4, "have": [0, 1, 4, 5, 7, 9, 14, 15, 17, 19, 20, 23], "hc": [0, 4, 7, 10, 14, 16, 20, 27], "head": [0, 4, 9, 13], "header": [4, 14, 17], "heavi": 16, "heavili": [17, 18], "height": [10, 17], "help": 4, "here": [1, 2, 3, 14, 15, 17, 25], "herebi": 8, "heurist": [4, 14], "heuristig": 14, "hex": 17, "hi": [4, 9], "hidden": [2, 23], "hierarchi": 0, "high": 0, "higher": [4, 14, 15, 16, 17], "highest": [5, 11, 16, 17], "highlight": 17, "hill": 7, "hillclimbsearch": [4, 20, 23], "histori": 14, "hold": 14, "holder": 8, "horsepow": 0, "horsepower_categori": 0, "hot": [0, 3, 4, 17], "how": [0, 4, 6, 7, 9, 11, 14, 19, 20, 23], "howev": [6, 15, 17], "hr": 14, "hrbp": 14, "hrekg": 14, "hrsat": 14, "hte": [0, 14], "htm": 3, "html": [6, 18], "http": [0, 3, 6, 14, 17, 18, 20], "huge": [14, 16], "hugin": 3, "hundr": [14, 16], "hybrid": [0, 14, 20], "hypothes": [7, 14], "hypothesi": [0, 4, 7, 14], "hypovolemia": 14, "i": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27], "ica": [20, 23], "idea": [0, 2, 9, 14, 25], "ideal": 14, "identif": [0, 4], "identifi": [0, 4, 7, 14], "ignor": 17, "ignore_shap": 17, "illustr": 21, "immens": [9, 19], "impact": [17, 18], "implement": [0, 7, 14, 17, 21, 23], "impli": [2, 8], "import": [0, 1, 4, 5, 9, 10, 11, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 26, 27], "import_dag": [3, 4, 5, 9, 10, 12, 13, 17, 18, 19, 20, 21, 23, 26], "import_exampl": [0, 3, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 27], "importerror": 6, "improv": [0, 14, 20], "includ": [8, 16, 17, 27], "include_lowest": 0, "incompat": 6, "incorpor": 14, "incorrect": 0, "increas": [14, 16, 17], "increment": 14, "independ": [0, 1, 4, 7, 14, 17, 20, 23], "independence_test": [0, 10, 12, 14, 16, 17, 20, 22, 23], "index": 23, "indic": [4, 6, 7, 14, 17, 21], "individu": 7, "induct": 14, "infeas": 14, "infer": [2, 3, 7, 8, 9, 11, 12, 17], "influenc": [14, 21], "info": [17, 18, 19, 20], "inform": [3, 4, 7, 14, 16, 17, 20], "informati": 17, "initi": [0, 16, 17], "input": [4, 10, 11, 16, 17, 20, 21, 27], "instal": [4, 10], "instanc": [0, 15, 17], "int": [17, 18, 20], "interact": [0, 16, 17, 23], "interdepend": [14, 26], "intern": 3, "interpret": 0, "interpretebl": [15, 17], "intersect": 16, "interv": 0, "intervalindex": 0, "introduc": 0, "introduct": 23, "intub": 14, "intuit": 23, "invari": 1, "inventor": 0, "investig": [0, 4, 9], "involv": [0, 4, 5, 14, 18, 20], "io": 14, "isol": 6, "issu": [0, 23], "iter": [14, 20], "its": [0, 5, 9, 14, 15, 17, 21, 23, 26], "jl": 0, "jnk": 21, "job": 26, "john": 0, "joint": [5, 13, 17, 18, 23], "jona": 2, "journal": [16, 20], "judgement": [4, 14], "judgment": 7, "julia": 0, "jupyt": 6, "just": 26, "k": 14, "k2": [4, 7, 9, 14, 15, 17, 19, 20], "k2score": [15, 17], "keep": [14, 17, 23], "kei": [4, 9, 14, 16, 17, 19, 20], "kernel": [1, 6], "kind": 8, "kinkedtub": 14, "know": [1, 10, 23], "knowledg": [0, 1, 2, 3, 4, 14, 16, 23], "known": 16, "kochenderf": 0, "kruskal": 14, "kwarg": [15, 17], "label": [0, 17], "lack": [9, 19], "larg": [9, 14, 19, 21], "larger": [14, 17, 21], "last": 6, "latest": 6, "lauritzen": 16, "layout": [10, 17, 22], "learn": [1, 2, 3, 8, 11, 13, 17, 19, 21, 22, 24, 26, 27], "learndiscretebayesnet": 0, "least": [0, 4, 26], "lectur": 2, "left": [4, 21], "len": 17, "length": 0, "less": [0, 14, 17, 20], "let": [0, 1, 4, 5, 6, 9, 10, 11, 12, 14, 16, 17, 22, 26], "level": [4, 7, 14], "leverag": 0, "liabil": 8, "liabl": 8, "librari": [1, 2, 3, 4, 7, 9, 10, 13, 14, 17, 19, 21, 22, 23], "licens": 8, "lift": 16, "like": [0, 3, 14, 16, 17], "likelihood": [7, 14, 19, 23], "limit": [8, 14, 16, 20, 27], "line": [6, 11, 17], "linear": [0, 20, 26], "linearili": 17, "lingam": [17, 20, 23], "link": 9, "list": [6, 16, 17, 18, 20, 23], "literatur": 16, "liu": [7, 20, 23, 26], "ll": [4, 9], "load": [0, 3, 4, 5, 7, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 27], "local": [4, 14, 16, 20, 23], "log10": [10, 17], "log_likelihood": 17, "look": [0, 10, 23], "loop": 14, "lot": [11, 14], "low": 0, "lower": [0, 20], "luckili": 16, "lung": [5, 9, 11, 14, 16, 22, 24], "lvedvolum": 14, "lvfailur": 14, "m": [0, 20], "machin": [4, 20], "mai": [0, 10, 16, 18, 21, 26], "main": [5, 7, 9, 14], "maintain": 23, "make": [0, 1, 4, 5, 7, 9, 10, 11, 13, 14, 15, 17, 19, 20, 21, 22, 23, 26], "make_dag": [0, 1, 4, 11, 13, 14, 15, 16, 17, 23, 26], "make_dot": 0, "mani": [4, 9, 10, 14, 26], "manipul": 14, "manner": [0, 4, 14, 21], "manual": [13, 23], "manufactur": 26, "map": 20, "marco": 20, "margin": [5, 14, 18], "markov": [1, 14, 17], "match": 4, "mate": [2, 25], "mathemat": 14, "matplotlib": 10, "matrix": [4, 17, 19, 20, 23], "matter": 0, "max": [0, 17], "max_indegre": 20, "max_it": 20, "max_iter": 0, "maxim": [9, 14, 19], "maxima": 20, "maximum": [7, 11, 14, 17, 18, 19, 20, 23], "maximumlikelihood": [0, 4, 14, 19], "maxscal": [10, 17], "mdl": [14, 20], "me": [2, 16, 25], "mean": [14, 16], "meaning": 0, "measur": [4, 14, 16, 20], "mechan": 1, "medic": 23, "medium": [0, 23, 25], "mek": 21, "menu": [2, 6], "merchant": 8, "merg": 8, "messag": 17, "method": [4, 8, 14, 15, 16, 17, 20, 23], "methodtyp": [0, 4, 10, 13, 14, 16, 17, 19, 20, 24, 26, 27], "michael": 2, "might": [1, 9, 19], "min_weight": 17, "minfil": 18, "minim": [4, 17], "minima": 14, "minimum": [0, 17], "minmax_dist": 17, "minneighbor": 18, "minscal": [10, 17], "minvol": 14, "minvolset": 14, "minweight": 18, "miser": 3, "miss": [3, 4, 9], "mit": 8, "mitig": [9, 19], "mix": [0, 4, 16, 17, 20, 27], "ml": [9, 19], "mle": [0, 9, 19], "mmhc": 20, "model": [2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 26, 27], "model1": 14, "model2": 14, "model3": 14, "model_1": 17, "model_2": 17, "model_edg": [17, 20], "model_ex_b": 4, "model_ex_bdeu": 4, "model_ex_k2": 4, "model_hc_b": 4, "model_hc_bdeu": 4, "model_hc_k2": 4, "model_learn": 4, "model_ml": 0, "model_pl": 12, "model_sl": [10, 12, 20], "model_tru": 4, "model_upd": 19, "model_year": 0, "moder": 0, "modifi": [8, 17], "modified_log_likelihood": 17, "modul": [6, 18, 23], "mont": 14, "more": [1, 3, 4, 9, 10, 14, 16, 17, 19], "most": [1, 6, 14, 20, 23], "motiv": 16, "mpg": 0, "much": [5, 9, 14, 18], "multiarrai": 6, "multinomi": 7, "multipartite_layout": 17, "multipl": [0, 14, 16, 17], "must": [4, 17, 26], "mutual": 14, "my": [2, 6, 16, 25], "mykel": 0, "n": [0, 3, 4, 6, 9, 10, 11, 12, 13, 16, 17, 19, 20, 26], "n_job": [19, 20], "naiv": [7, 20, 23], "naivebay": [17, 20, 23], "naivebayesian": 7, "name": [0, 4, 6, 14, 16, 17, 18, 20, 21], "name_of_node_1": 18, "name_of_node_2": 18, "natur": [9, 19], "na\u00efv": 14, "nb": [7, 17, 20], "need": [0, 1, 4, 6, 9, 10, 12, 14, 15, 16, 17, 19], "neg": 5, "neither": 16, "net": 14, "network": [0, 1, 3, 8, 9, 11, 13, 14, 17, 19, 20, 23], "networkx": 23, "never": [16, 20], "nevertheless": 14, "new": [0, 1, 10, 12, 14], "next": 16, "neyman": 17, "nice": [0, 1, 17], "nielsen": 2, "node": [1, 4, 7, 9, 11, 14, 16, 17, 19, 20, 21, 23, 26, 27], "node1": 17, "node2": 17, "node_color": [10, 17], "node_properti": [10, 17], "node_s": [10, 17], "node_shap": [10, 17], "non": [0, 4, 16, 17, 20], "none": [10, 14, 16, 17, 18, 19, 20], "noninfring": 8, "nonneg": 19, "normal": [0, 9, 19], "note": [0, 1, 2, 3, 4, 9, 10, 14, 16, 17], "notebook": [6, 17, 23], "noth": [1, 4, 14], "notic": [6, 8], "now": [0, 1, 6, 9, 11, 13, 14, 16], "np": [0, 17], "null": [4, 7, 14], "num": 17, "number": [4, 9, 14, 16, 17, 20, 21], "numer": [16, 17, 20], "numpi": [0, 6], "o": [10, 17], "object": [17, 18, 19], "observ": [0, 4, 7, 9, 14, 19, 20], "obtain": [0, 8], "obvious": [11, 17], "occur": [6, 9, 14, 19], "off": [5, 9, 19], "offer": 23, "often": [1, 9, 14, 19], "older": 6, "onc": 14, "one": [0, 1, 3, 4, 9, 14, 16, 17, 19, 26], "onehot": [16, 27], "ones": [9, 18, 19], "onli": [0, 9, 10, 11, 14, 15, 16, 17, 20, 26, 27], "open": [2, 9, 25], "oper": 26, "optim": [7, 14, 20], "option": [0, 17, 18, 20], "order": [0, 13, 16, 17, 18, 26], "org": [6, 14, 18, 20], "orient": 0, "orienti": 1, "origin": 0, "other": [0, 2, 4, 8, 14, 16, 17, 20, 25, 26], "otherwai": 21, "otherwis": [1, 8], "our": [1, 4, 5, 9, 14, 16, 18, 19], "out": [0, 8, 9], "outcom": 0, "output": [0, 14, 17, 18, 21], "outward": 14, "over": [1, 2, 5, 18, 23, 25], "overfit": [9, 19], "overview": 23, "overwit": 17, "overwrit": [17, 24], "own": [0, 4, 23], "p": [0, 5, 7, 9, 11, 14, 16, 17, 18, 19, 22], "p38": 21, "p_valu": [4, 10, 14, 17, 22], "packag": [3, 8, 23], "page": [2, 23, 25], "pair": [1, 14, 17, 21, 22], "panda": [0, 3, 17, 19], "pap": 14, "param": [15, 17, 19, 20], "paramet": [1, 3, 7, 8, 10, 13, 14, 15, 16, 17, 18, 19, 20], "parameter_learn": [0, 3, 4, 9, 11, 12, 13, 15, 16, 17, 23], "parametr": [0, 20], "params_interact": [10, 17], "params_lingam": [0, 20], "params_stat": [10, 14, 17], "paramt": 20, "parch": [14, 16, 27], "parent": [9, 14, 19, 20], "part": [14, 16], "partial": 0, "particular": [8, 26], "pass": [15, 17, 20], "path": [17, 26], "path_color": 17, "pathfind": 3, "pathnam": 17, "patient": 16, "pattern": [0, 14], "pc": [7, 20, 23], "pclass": [4, 16, 27], "pcwp": 14, "pd": [0, 3, 15, 17, 19, 20], "pdag": 0, "pdf": 17, "pearl": 2, "per": [4, 16], "perc_min_num": 17, "percentag": 17, "perfomr": 0, "perform": [0, 11, 14, 16, 17, 20, 22, 23, 26], "permiss": 8, "permit": 8, "person": [5, 8], "peter": [0, 2], "pgmpy": [1, 2, 3, 14, 15, 17, 18, 20, 23], "phi": [0, 4, 5, 11, 16], "pick": 14, "pickl": 17, "pip": [4, 10, 12, 23], "pip2": 21, "pip3": 21, "pipelin": 23, "pka": 21, "pkc": 21, "pkl": 17, "plai": 16, "planar_layout": 17, "plcg": 21, "pleas": 18, "plolt": 17, "plot": [0, 1, 3, 4, 6, 7, 9, 11, 12, 14, 16, 17, 18, 19, 20, 22, 26, 27], "plot_graphviz": [0, 10, 14, 17, 23], "po": [4, 10, 14, 16, 17, 20, 22], "point": [0, 4, 9, 16, 21, 26], "polynomi": 14, "popular": 0, "portion": 8, "posit": 17, "possibl": [0, 7, 9, 13, 14, 20, 26], "posterior": [7, 14], "pout": [11, 17], "pp": 20, "practic": [3, 4, 14], "pre": [0, 3, 4, 9, 16, 17], "pred": 17, "predict": 17, "prediction_coef": 17, "prediction_feature_import": 17, "prediction_feature_indic": 17, "prediction_line_color": 17, "prediction_target_label": 17, "predictor": 0, "preprocess": 14, "presenc": 16, "present": [4, 9, 17], "press": [2, 14, 25], "previou": 22, "previous": 4, "prim": 14, "principl": 0, "print": [0, 1, 3, 4, 9, 11, 12, 14, 16, 17, 18, 19, 21, 22], "print_cpd": [1, 4, 9, 11, 14, 16, 17, 23], "prior": [9, 14, 19, 20], "prior_knowledg": 20, "probabilist": [2, 9, 14], "probabilti": 11, "probabl": [4, 5, 7, 11, 17, 18, 19, 23], "problem": [6, 9, 19, 26], "proce": 14, "procedur": [0, 20], "process": [0, 3, 4, 9, 16, 17, 18], "product": [2, 5, 18, 25], "profil": [2, 25], "progress": [17, 18, 19], "prohibit": 14, "project": [2, 25], "propag": 5, "properti": [0, 17, 23], "propos": [0, 14], "provid": [1, 8, 14, 16, 17, 18, 20], "prune": [0, 10, 16, 17], "pseudo": [9, 19], "publish": 8, "pull": [2, 25], "pulmembolu": 14, "purpos": [8, 10, 16, 21], "put": 16, "pvalu": [0, 10, 14, 16, 17], "pvsat": 14, "pwling": 20, "pydot_layout": 17, "pypi": 23, "python": [2, 6, 8, 12, 17, 23], "q": [4, 16], "q1": [1, 4, 5, 16], "q2": [5, 16], "q3": 16, "q4": 16, "quantit": 9, "queri": [5, 11, 12, 16, 17, 18], "query2df": [17, 23], "question": [4, 9, 16, 17, 18], "quick": 23, "quit": [0, 4, 14], "r": [0, 17, 20], "radiat": 14, "raf": 21, "rai": 16, "rain": [1, 3, 4, 5, 9, 12, 13, 14, 15, 17, 18, 21], "rais": 17, "random": [0, 14], "random_discret": 14, "random_layout": 17, "random_st": [0, 20], "rang": 0, "rank": 26, "raw": [14, 16, 23], "re": [1, 16], "read": [4, 14, 21], "readili": [1, 3, 16, 21], "readwrit": 3, "real": [0, 26], "reason": 9, "recent": [6, 16], "record": 16, "recov": 0, "red": [16, 17], "refer": [14, 17, 18, 20, 23, 26], "reflect": 0, "regard": 16, "regardless": 0, "regress": 0, "reichenbach": 14, "rel": [9, 19], "relat": [4, 11, 16, 23], "relationship": [0, 1, 2, 4, 9, 14, 16, 17, 20, 21, 23], "relax": 14, "reli": 7, "remain": [0, 20], "remov": [0, 6, 7, 14, 20, 27], "render": 17, "repeat": [0, 16], "repo": [2, 25], "report": [0, 2, 23, 25], "repres": [1, 9, 15, 16, 17, 19, 21, 26], "represent": [17, 23], "request": [2, 25], "requir": [3, 13, 14, 17, 20, 21], "research": 20, "reset": 6, "residu": 0, "respons": 26, "restart": 6, "restrict": [8, 14], "result": [0, 3, 6, 7, 9, 10, 11, 14, 16, 17, 20, 21, 22, 27], "retriev": [10, 17, 21], "return": [11, 14, 15, 16, 17, 18, 20, 26], "return_all_dag": 20, "reveal": [2, 23], "right": [0, 2, 4, 8, 21], "risk": 16, "robust": 14, "roman": 10, "root": [14, 20], "root_nod": [14, 16, 20, 26], "row": [0, 17, 21], "royal": 16, "rtype": [15, 17, 19, 20], "rule": 14, "run": [4, 6, 11], "runtim": 6, "runtimeerror": 6, "sach": [3, 9, 17, 21], "said": 26, "salari": 2, "same": [0, 5, 9, 11, 14, 17, 18, 22], "sampel": 17, "sampl": [0, 3, 4, 7, 8, 9, 10, 11, 12, 14, 16, 17, 19, 20, 22, 26], "san": 17, "saniti": 14, "sao2": 14, "save": [5, 17, 23], "scale": [10, 17], "scenario": 16, "schedul": 26, "score": [4, 12, 14, 16, 17, 19, 23], "scoretyp": [0, 4, 10, 14, 19, 20], "scoring_method": [15, 17], "screen": [16, 17, 18, 19], "screenshot": 10, "scutari": 20, "sd": 20, "search": [4, 7, 14, 19, 20, 23, 27], "second": 16, "section": [6, 14, 16], "see": [0, 4, 6, 9, 11, 14, 16, 20, 21], "seen": [9, 21], "select": [17, 20], "sell": 8, "semi": [0, 20], "sens": [9, 19], "sensibl": [9, 19], "sensit": 4, "sentenc": 26, "sep": 17, "seper": [9, 19], "sequenc": 26, "serial": 26, "serif": 17, "serv": 0, "set": [0, 1, 2, 5, 6, 7, 9, 10, 14, 16, 17, 20, 22, 26], "setgraphviz": 17, "setup": 1, "sever": [3, 4], "sex": [4, 14, 16, 27], "shall": 8, "shape": [17, 21], "share": 0, "shell_layout": 17, "shimizu": 20, "short": [16, 23], "should": [0, 4, 6, 9, 14, 17, 18, 19, 26], "show": [1, 9, 11, 16, 17, 21, 22], "show_slid": 17, "showcas": 4, "showfig": 17, "shown": [9, 14, 17], "shunt": 14, "sibsp": 16, "side": 2, "signfic": 14, "signific": [0, 4, 7, 10, 16, 17], "significance_level": [17, 22], "simpl": [1, 4, 6, 9, 16, 17, 19, 23], "simpli": [9, 10, 11, 14, 19, 26], "simplifi": 0, "singl": [9, 11, 14, 16, 17, 19], "sisl": 0, "size": [0, 4, 9, 14, 17, 19, 20], "skeleton": 0, "slide": 2, "slightli": 16, "small": [0, 4, 11, 14, 16, 21], "smaller": [5, 18], "smoke": [5, 9, 10, 11, 14, 16, 22], "smoker": 5, "smooth": 19, "so": [5, 8, 9, 14, 18, 19], "societi": 16, "softwar": 8, "solv": 6, "some": [0, 4, 5, 10, 11, 12, 13, 14, 16, 17, 21], "sometim": 1, "somewhat": [9, 19], "sort": [17, 23], "sourc": [0, 2, 14, 16, 17, 21, 22], "space": [7, 14, 19, 20], "span": 14, "spars": [17, 21], "special": [14, 17], "specif": [0, 9, 10, 14, 15, 17, 19], "specifi": [0, 9, 10, 11, 14, 16, 17, 19, 23], "specifici": 4, "spectral_layout": 17, "speed": [17, 18], "spiegelhalt": 16, "split": 7, "sponser": 23, "sponsor": [23, 25], "spring_layout": 17, "sprinkler": [1, 3, 5, 9, 12, 13, 14, 15, 16, 17, 18, 19, 21, 26], "spuriou": 0, "squar": [0, 14, 20, 21, 22], "stackoverflow": 17, "standard": 0, "star": [2, 25], "start": [6, 7, 9, 11, 12, 14, 16, 17, 19, 20, 21, 23, 26], "stat_test": [14, 17, 22], "state": [9, 11, 14, 16, 17, 19], "static": [17, 23], "statis": 17, "statist": [0, 4, 7, 9, 10, 14, 16, 17, 20, 22], "statu": 17, "step": [0, 3, 14, 16], "stop": 7, "store": [15, 16, 17, 21], "storm": 21, "stormofsword": [17, 21], "str": [15, 17, 18, 19, 20], "straight": [15, 17], "straightforward": [0, 4, 9, 12, 14, 19], "strategi": [14, 19, 20], "strength": [0, 10, 14, 16, 17, 20, 22], "string": [17, 18, 20], "strokevolum": 14, "structer": 16, "structur": [1, 2, 3, 8, 10, 17, 21, 22, 24, 26, 27], "structure_learn": [0, 3, 4, 6, 10, 12, 14, 16, 17, 22, 23, 24, 26, 27], "structure_scor": [15, 17, 20, 23], "stuctur": 17, "subject": [0, 8], "sublicens": 8, "subscrib": [2, 25], "substack": [2, 25], "substanti": 8, "suffici": [4, 14, 16], "sum": 17, "super": [14, 20], "superior": 0, "support": [2, 7, 9, 15, 17, 19, 23, 25], "suppos": [9, 16], "sure": 16, "surviv": [4, 14, 16, 27], "suspicion": 16, "sword": 21, "symmetr": 17, "synthet": 16, "system": [1, 16, 17, 26], "t": [0, 2, 15, 17], "tabl": [1, 4, 9, 16, 21], "tablefmt": [4, 14, 17], "tabu_length": 20, "tabul": [4, 14, 17], "tabularcpd": [1, 14, 17], "taget": [17, 21], "take": [9, 13, 14, 16, 17, 18, 19, 26], "tan": [7, 20, 23, 24], "target": [0, 14, 17, 21, 22], "task": [0, 9, 16, 19, 20, 26], "taskesen": 8, "techniqu": [14, 17, 20], "teh": 16, "tell": [0, 14], "temp": 17, "ten": 14, "term": [0, 1, 9, 20], "termin": 14, "test": [0, 4, 7, 10, 16, 17, 20, 23], "th": 11, "than": [0, 1, 14, 16, 20], "thei": [9, 20, 27], "them": [0, 5, 16, 18], "theorem": [2, 14, 23], "theori": [21, 23], "therefor": [1, 3, 14], "thi": [0, 1, 2, 3, 4, 6, 7, 8, 9, 11, 14, 15, 16, 17, 18, 19, 20, 21, 23, 25, 26], "think": [9, 19], "third": 14, "those": [9, 14, 19, 20, 27], "though": [1, 11], "thousand": [14, 16], "three": [0, 14, 20], "threshold": 0, "throughout": [7, 14], "thu": [0, 5, 14, 18, 26], "ticket": 14, "tim": 0, "time": [4, 10, 11, 21, 26], "tip": 16, "titan": [4, 14, 23, 27], "titl": 17, "to_bayesiannetwork": [17, 23], "to_df": [17, 18], "to_undirect": [17, 23], "togeth": [0, 14], "toi": 0, "too": 16, "tooltip": 0, "top": 23, "topic": 1, "topolog": [17, 23], "topological_sort": [17, 23, 26], "tort": 8, "total": [9, 19], "toward": [4, 16], "tpr": 14, "trace": [17, 18, 19, 20], "traceback": 6, "tractabl": 14, "train": 14, "transform": [14, 17], "trap": 14, "travers": 20, "treatment": 16, "tree": [5, 7, 20, 23], "treesearch": 20, "troubleshoot": 6, "true": [0, 4, 9, 10, 13, 14, 16, 17, 18, 21, 22, 24], "truth": [4, 9, 20], "try": [5, 9], "tub": [9, 14, 16, 17, 22], "tuberculosi": 16, "tupl": [17, 20], "two": [5, 7, 14, 16, 17, 20, 22, 23], "type": [0, 4, 15, 16, 17, 18, 19, 20], "typic": 0, "u": [0, 5, 6, 14, 18], "uncertainti": 14, "uncorrel": 17, "under": [0, 14, 16, 17], "underli": [0, 9, 19], "underneath": [1, 14, 26], "understand": [0, 1, 11], "undirect": [0, 7, 14, 17], "unequ": 20, "uniform": [0, 9, 19], "uninstal": 23, "uniqu": [4, 17, 21], "unless": [9, 19], "unstabl": [9, 19], "unstructur": 16, "until": [7, 14], "updat": [1, 6, 9, 14, 17, 19], "url": 17, "us": [0, 1, 2, 3, 4, 6, 7, 8, 9, 10, 11, 13, 15, 17, 18, 19, 20, 21, 22, 23, 24, 26], "usag": 0, "user": [4, 6, 13, 17, 22], "util": [0, 17], "v": [0, 4, 14], "valid": [17, 23, 26], "valu": [0, 1, 3, 4, 5, 7, 9, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22], "variabl": [0, 1, 4, 5, 7, 9, 10, 11, 12, 14, 16, 17, 18, 19, 20, 21, 22, 27], "variable_card": [1, 14], "variablescan": 27, "variou": [0, 2, 10, 14, 16, 17, 21, 23, 25], "ve": 18, "vec": [17, 21], "vec2adjmat": [17, 23], "vec2df": [17, 23], "vector": [17, 23], "vehicl": 0, "ventalv": 14, "ventlung": 14, "ventmach": 14, "venttub": 14, "verbos": [0, 11, 13, 17, 18, 19, 20, 26], "veri": [0, 4, 9, 10, 14, 15, 16, 17, 19], "version": 6, "vertic": [14, 21, 26], "vfml": 3, "viarabl": 0, "view": [0, 17], "violat": 0, "visibl": 17, "visit": 16, "visual": [14, 17], "wa": [0, 4, 9, 14, 16, 19], "wai": [0, 2, 9, 16, 19, 23, 25], "wait": 4, "want": [5, 6, 9, 10, 14, 16, 18, 19, 23], "warm": 0, "warn": [0, 17, 18, 19, 20], "warranti": 8, "washington": 3, "water": [14, 17], "we": [0, 1, 4, 5, 9, 10, 11, 12, 14, 16, 17, 18, 19, 21, 22, 26], "web": 17, "weight": [0, 10, 14, 17, 21], "weightedminfil": 18, "weigth": 21, "well": [0, 4, 7, 14, 20], "were": [0, 4], "wet": [1, 5], "wet_grass": [1, 3, 4, 5, 9, 12, 13, 14, 15, 17, 18, 21, 26], "what": [0, 2, 4, 5, 9, 14, 16, 23, 26], "wheeler": 0, "when": [0, 1, 6, 9, 17, 19, 20, 21, 23, 27], "where": [0, 2, 10, 14, 17, 20, 25], "wherea": [16, 21], "whether": [0, 6, 8, 17, 21], "which": [0, 6, 7, 9, 10, 14, 15, 16, 17, 18, 19, 21], "while": [0, 9, 16, 19, 20], "white": [10, 16, 17, 20, 23], "white_list": [16, 20, 27], "whole": 17, "whom": 8, "whose": [11, 15, 17], "wide": 0, "width": [0, 10, 17], "willing": 4, "wise": [11, 17], "within": [3, 4, 16], "without": [3, 8, 11, 16, 22], "word": [0, 17, 20], "work": [1, 5, 6, 11, 18, 20, 23], "workflow": 26, "world": 0, "would": 16, "write": 3, "write_bif": 3, "writer": 3, "www": 3, "x": [0, 4, 5, 7, 14, 16, 18, 19], "x0": 0, "x1": 0, "x2": 0, "x3": 0, "x4": 0, "x5": 0, "xmlbif": 3, "xrai": [5, 9, 10, 11, 14, 16, 17, 22], "xtest": 11, "y": [4, 7, 14, 17], "y_min": 17, "ye": 16, "yet": [1, 16], "yi": 0, "yield": 14, "you": [0, 1, 2, 4, 6, 9, 10, 11, 20, 23, 25], "your": [2, 4, 6, 16, 21, 23, 26], "z": [4, 7, 14], "zero": [4, 17], "\u03b1": 19}, "titles": ["Working with Continous data", "Directed Acyclic Graphs", "Sponsor", "DataFrames", "Start with RAW data", "Inference", "Install from Pypi (pip)", "Introduction", "Licence", "Parameter learning", "Interactive plot", "Predict", "Quickstart", "Forward Sampling", "Causation", "Structure Scores", "Use Case Titanic", "bnlearn.bnlearn", "bnlearn.inference", "bnlearn.parameter_learning", "bnlearn.structure_learning", "Data Conversions", "Independence test", "BNLearn\u2019s Documentation", "Saving and Loading", "<no title>", "Topological sort", "Black and white lists"], "titleterms": {"": 23, "1": [4, 5, 9], "2": [4, 5, 9], "3": [4, 5], "A": 14, "The": 1, "acycl": [1, 16], "adjac": 21, "adjmat2dict": 21, "adjmat2vec": 21, "algorithm": [5, 7], "asia": 10, "attribut": 23, "augment": 14, "automat": 0, "b": 14, "base": [7, 14, 20], "bay": 14, "bayesian": [4, 7, 9], "bif": 3, "black": 27, "blog": 2, "bnlearn": [17, 18, 19, 20, 23], "build": 1, "c": 14, "case": 16, "causal": [1, 16], "causat": 14, "chi2": 14, "chow": 14, "cite": 2, "classifi": 7, "colab": 2, "color": 10, "comparison": 10, "comput": 16, "condit": [9, 16], "constraint": [7, 14], "content": 23, "contin": 0, "continu": [0, 23], "convers": 21, "cpd": [9, 16], "creat": [4, 6, 16], "custom": 16, "dag": [1, 3, 14], "dag2adjmat": 21, "data": [0, 4, 16, 21, 23], "datafram": 3, "dataset": [0, 16], "defin": 10, "depict": 14, "descript": [16, 17, 19], "detect": 14, "determin": 16, "differ": 10, "direct": [0, 1, 16], "discoveri": 7, "discret": 0, "distribut": [1, 9, 16], "document": 23, "domain": 16, "edg": 10, "environ": 6, "error": 6, "estim": 9, "exampl": [0, 4, 5, 9, 12, 14, 23], "exhaustivesearch": 14, "export": 3, "forward": 13, "from": [4, 6, 16], "function": 23, "gener": 1, "gibb": 13, "github": [2, 6], "graph": [1, 16, 26], "graphviz": 10, "ground": 10, "have": 16, "het": 10, "hillclimbsearch": 14, "how": 16, "ica": 0, "import": [3, 6, 16], "independ": 22, "indic": 23, "infer": [0, 1, 4, 5, 16, 18, 23], "instal": [6, 12, 23], "interact": 10, "introduct": 7, "its": 4, "joint": 1, "know": 16, "learn": [0, 4, 7, 9, 10, 14, 16, 20, 23], "licenc": 8, "likelihood": 9, "lingam": 0, "list": 27, "liu": 14, "load": 24, "local": 7, "make": 16, "manual": 0, "matrix": 21, "maximum": 9, "medic": 16, "medium": 2, "method": 0, "model": [0, 1], "naiv": 14, "naivebay": 14, "network": [4, 7, 10], "networkx": 10, "node": 10, "notebook": 2, "other": 23, "overview": 1, "own": 1, "packag": 2, "paramet": [0, 4, 9, 23], "parameter_learn": 19, "pc": 0, "perform": 4, "pip": 6, "plot": [10, 23], "predict": [11, 23], "probabl": [1, 9, 14, 16], "properti": 10, "prune": 14, "pypi": 6, "quick": 12, "quickstart": [12, 23], "raw": 4, "refer": [0, 2], "relat": 2, "represent": 1, "sampl": [13, 23], "save": 24, "score": [7, 15, 20], "set": 4, "short": 12, "signific": 14, "size": 10, "sort": 26, "specifi": 1, "sponsor": 2, "sprinkler": 4, "start": 4, "static": 10, "structur": [0, 4, 7, 14, 15, 16, 20, 23], "structure_learn": 20, "tabl": 23, "tan": 14, "test": [14, 22], "theori": 14, "titan": 16, "topolog": 26, "tree": 14, "truth": 10, "two": 10, "uninstal": 6, "unsort": 26, "us": [14, 16], "user": 10, "valid": 6, "vec2adjmat": 21, "vec2df": 21, "vector": 21, "versu": 10, "when": 16, "white": 27, "without": 14, "work": 0, "you": 16, "your": 1}}) \ No newline at end of file diff --git a/docs/source/UseCases.rst b/docs/source/UseCases.rst index f9412d5..035cca5 100644 --- a/docs/source/UseCases.rst +++ b/docs/source/UseCases.rst @@ -23,7 +23,7 @@ In the following example we will learn the structure on the Titanic dataset. # Compute edge strength with the chi_square test statistic model = bn.independence_test(model, dfnum, test='chi_square', prune=True) # Plot - bn.plot(model, interactive=False, pos=G['pos']) + G = bn.plot(model, interactive=False, pos=G['pos'], edge_labels='pvalue') # Parameter learning model = bn.parameter_learning.fit(model, dfnum) @@ -35,9 +35,11 @@ In the following example we will learn the structure on the Titanic dataset. .. table:: Learned structure on the Titanic dataset. :align: center - +----------+----------+ - | |fig_t1| | |fig_t2| | - +----------+----------+ + +----------+ + | |fig_t1| | + +----------+ + | |fig_t2| | + +----------+ At this point we can also start making inferences: