checkFEAT

#!/bin/sh
#
#   Copyright (C) Eugene Duff 2004 University of Oxford
#
#   SHCOPYRIGHT

Usage() {
	function=`basename $0`
	echo Usage: $function [-eo] FEATdirs
	echo 
	echo Checks status of FEAT analyses
	echo 
	echo Option:
	echo -e list only dirs with errors
	echo -g list on dirs without errors
	
	exit 1 
}

[ "$1" = "" ] && Usage

firstchar=`echo $1 | head -c 1`

while [[ $firstchar == '-' ]]
do
        if [[ $1 == '-eo' ]]
        then eoflag=1   
        elif [[ $1 == '-go' ]]
        then gflag=1   
        fi

        shift
	firstchar=`echo $1 | head -c 1`
done

for aa in $@;
	do a=`grep  -o 'STILL RUNNING' $aa/report.html`
	b=`grep  -o 'Errors occured' $aa/report.html`
	bb=`grep  -l '[Ee][Rr][Rr][Oo][Rr]' $aa/report_log.html`

	if [[ $b != '' ]] && [[ $eoflag != '1' ]] && [[ $gflag != '1' ]] 
	then echo $aa $a $b
	elif [[ $b != '' ]] && [[ $gflag != '1' ]]
	then echo $aa 
	elif [[ $bb != '' ]]  && [[ $eoflag != '1' ]] && [[ $gflag != '1' ]]
	then 	echo $aa $a Errors in log file
	elif [[ $bb != '' ]] && [[ $gflag != '1' ]]
	then 	echo $aa $a 
	elif [[ $bb == '' ]] && [[ $b == '' ]] && [[ $eoflag != '1' ]] 
	then	echo $aa $a	
	fi
done;