GitHub - edmondac/nexus_scripts: Scripts for making and manipulating NEXUS files, along with some for dealing with input databases (such as from the INTF in Münster).

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Scripts for making and manipulating NEXUS files, along with some for dealing with input databases (such as from the INTF in Münster).

MIT license

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Name		Name	Last commit message	Last commit date
Latest commit History 55 Commits
.gitignore		.gitignore
LICENSE		LICENSE
README		README
analyse_nexus_characters.py		analyse_nexus_characters.py
combine_nexus_files.py		combine_nexus_files.py
compare_mss_munster.py		compare_mss_munster.py
dot_to_net.py		dot_to_net.py
fdi_to_dot.py		fdi_to_dot.py
fdi_to_net.py		fdi_to_net.py
fdi_to_svg.py		fdi_to_svg.py
find_nodes_in_ascii_tree.py		find_nodes_in_ascii_tree.py
find_singular_readings_munster.py		find_singular_readings_munster.py
find_unique_readings_munster.py		find_unique_readings_munster.py
import_from_munster_jn18_mysql.py		import_from_munster_jn18_mysql.py
import_from_munster_mysql.py		import_from_munster_mysql.py
nexus_from_munster.py		nexus_from_munster.py
nexus_subset.py		nexus_subset.py
nexus_to_rdf.py		nexus_to_rdf.py
nexus_tree_to_ascii.py		nexus_tree_to_ascii.py
nexus_tree_to_phyloxml.py		nexus_tree_to_phyloxml.py
relabel_fdi.py		relabel_fdi.py
requirements.txt		requirements.txt

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Scripts for making and manipulating NEXUS files, along with some for 
dealing with input databases (such as from the INTF in Münster).

The scripts were designed to work with my input data, and may not always
work properly with other data. If it doesn't work, and you would like to 
help improve the software then please create an issue at 
https://github.com/edmondac/nexus_scripts/issues

Use a virtualenv built with the supplied requirements.txt

You'll need these installed:
 * libmysqlclient-dev (for Ubuntu)
 * python3.5-dev
 * graphviz libgraphviz-dev