diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 2e9db02f..9f6e5895 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -13,7 +13,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: ["3.8", "3.9"] + python-version: ["3.9"] steps: - uses: actions/checkout@v2 diff --git a/scanpy-scripts-tests.bats b/scanpy-scripts-tests.bats index 93af736d..86e1d3f2 100755 --- a/scanpy-scripts-tests.bats +++ b/scanpy-scripts-tests.bats @@ -180,7 +180,7 @@ setup() { skip "$singlet_obs exists" fi - run rm -rf $batch_obs && echo -e "batch\n$(printf "%0.sbatch1\n" {1..1350})\n$(printf "%0.sbatch2\n" {1..1350})" > $batch_obs + run rm -rf $batch_obs && echo -e "batch\tadditional_column\n$(for i in {1..1350}; do echo -e "batch1\tdata$i"; done)\n$(for i in {1..1350}; do echo -e "batch2\tinfo$i"; done)" > $batch_obs [ "$status" -eq 0 ] [ -f "$batch_obs" ] diff --git a/test-env.yaml b/test-env.yaml index 83b06361..cb39577d 100644 --- a/test-env.yaml +++ b/test-env.yaml @@ -4,7 +4,10 @@ channels: - bioconda - defaults dependencies: + - python=3.9.18 - scanpy=1.9.3 + - h5py=3.10.0 + - anndata=0.10.5.post1 - louvain - igraph - leidenalg