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README.Rmd
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---
output: github_document
---
# anomanor
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[](https://github.com/dmenne/anomanor/actions)
[](https://app.codecov.io/gh/dmenne/anomanor?branch=master)
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## Overview
EUGIM Hub Project: Educational training of physicians working with high-resolution anorectal manometry 
Interactive application providing online training for physicians and other practitioners using high-resolution anorectal manometry and the [London
Classification](https://onlinelibrary.wiley.com/doi/full/10.1111/nmo.13679) for disorders of anorectal function. It provides the opportunity to
compare classification performance using High-Resolution-Manometry (HRM) and conventional manometry against a "reference standard" set by the lead authors of this classification system. Data acquired during this training will be used to assess inter-observer agreement between practitioners.
The results will be published. All those completing all 50 cases will be acknowledged. The information obtained will contribute to the development of version 2.0 of the London classification.
## Credits
* Version: `r packageVersion("anomanor")`
```{r, echo = FALSE, results = 'asis'}
desc::description$new()$get_authors() |>
purrr::walk(
\(x) {
cat("* ",x$given, x$family, "(")
cat( x$role, sep = ", ")
cat(")\n")
}
)
```
_aut, cre, cph, ..._ see [Library of Congress Code List for Relators](https://www.loc.gov/marc/relators/relaterm.html)
The program uses [R](https://www.r-project.org/), [Shiny](https://shiny.rstudio.com/)/[R](https://www.r-project.org/) and is under [MIT Licence](https://en.wikipedia.org/wiki/MIT_License).
[**London Classification**](https://onlinelibrary.wiley.com/doi/full/10.1111/nmo.13679) Emma Carrington, Henriette Heinrich, Mark Fox, Charles Knowles, Mark Scott Funding: United European Gastroenterology: Guideline Dissemination Activity Grant
## Simple installation
You can run the Shiny app locally on your Windows or Linux desktop as a simulated user `sa_admin`. Two sample records are included. Instructions for installation are given on the [Docker Hub site for anomanor](https://hub.docker.com/repository/docker/dmenne/anomanor).
## Developer installation
As a developer with background in R and Shiny, you can install the R-package and associated files with
```
devtools::install_github("dmenne/anomanor")
```
## Full Installation
This app is part of a Docker-based web installation using [Keykloak](https://www.keycloak.org/) and [ShinyProxy](https://www.shinyproxy.io/) for user management. Scripts and templates for setting are included - see the comments in the `inst` folder and the configuration scripts, e.g. `run_all.sh`. Installation of the full system requires extensive knowledge and is not explained here.