0 had sufficient coverage for comparison

[jingmeng-bioinformatics]

I ran VarScan2 on my paired pileup files, and I do not think there are problems with the input files (please see attached a part of the input files), but I really do not understand why it gave me output like: 0 had sufficient coverage for comparison

java -jar ~/Downloads/varscan-master/VarScan.v2.4.4.jar somatic ~/normal.pileup ~/tumor.pileup --output-snp ~/snp.vcf --output-indel ~/indel.vcf --min-coverage-tumor 8 --output-vcf 1 --min-var-freq 0.075 --strand-filter 1

65821 positions in tumor
65821 positions shared in normal
0 had sufficient coverage for comparison
0 were called Reference
0 were mixed SNP-indel calls and filtered
0 were removed by the strand filter
0 were called Germline
0 were called LOH
0 were called Somatic
0 were called Unknown
0 were called Variant

normal.pileup.txt
tumor.pileup.txt

I tried other versions of VarScan2 and get the same result. Can you please help me check what caused the problem? Thanks very much for your time!

[ej354]

I'm having the same issue, did you solve this?