Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

import plasmid maps + sequences and map to correct plasmid #85

Open
pfey03 opened this issue May 11, 2020 · 0 comments
Open

import plasmid maps + sequences and map to correct plasmid #85

pfey03 opened this issue May 11, 2020 · 0 comments
Assignees

Comments

@pfey03
Copy link

pfey03 commented May 11, 2020

Plasmid maps and sequences are stored in
/data/plasmid/images (maps jpg - three are redundant jpg.bak files that can be ignored)
/data/plasmid/sequence (txt, have no file extension)

Files in both folders are named for the current plasmid ID. For example:
pDM347
http://dictybase.org/db/cgi-bin/dictyBase/SC/plasmid_details.pl?id=568
image file 568.jpg
sequence 568 (text file no extension)

Useful to associate the images and sequences to the correct plasmids would be a mapping file, new DBP ID to historic plasmid ID:
DBP0000568 - 568

@pfey03 pfey03 changed the title import plasmid maps and sequences and map to correct plasmid import plasmid maps + sequences and map to correct plasmid May 11, 2020
@erichartline erichartline transferred this issue from another repository Sep 18, 2020
@erichartline erichartline transferred this issue from dictyBase/dicty-stock-center Nov 11, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants