-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathretraining_shift_cycle_6.py
286 lines (211 loc) · 8.83 KB
/
retraining_shift_cycle_6.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
from keras.datasets import mnist
from keras.utils import to_categorical
from keras.models import Sequential, load_model
from keras.layers import Dense, Conv2D, Flatten,Dropout, MaxPooling2D, AveragePooling2D, Activation
import keras
import numpy as np
import pandas as pd
from sklearn.model_selection import train_test_split
from keras import backend as K
from numpy import genfromtxt
import sys
rep = sys.argv[1]
train = 1000
val = 500
test = 1000
#test = 70000 - (train+val)
rand_seed = int(sys.argv[2])
path = "Cycle6/rep"+rep
(Xtrain, ytrain), (Xtest, ytest) = mnist.load_data()
x = np.concatenate((Xtrain, Xtest))
y = np.concatenate((ytrain, ytest))
Xtrain, Xtemp, ytrain, ytemp = train_test_split(x, y, train_size=train, random_state=rand_seed)
Xval, Xtest, yval, ytest = train_test_split(Xtemp, ytemp, train_size=val, random_state=rand_seed)
Xtest, X_remaining, ytest, y_remaining = train_test_split(Xtest, ytest, train_size=test, random_state=rand_seed)
Xtest, X_remaining, ytest, y_remaining = train_test_split(X_remaining, y_remaining, train_size=test, random_state=rand_seed)
Xtest, X_remaining, ytest, y_remaining = train_test_split(X_remaining, y_remaining, train_size=test, random_state=rand_seed)
Xtest, X_remaining, ytest, y_remaining = train_test_split(X_remaining, y_remaining, train_size=test, random_state=rand_seed)
tot_train_examples = train
tot_test_examples = val
width=28
height=28
channels = 1
f_size1 = 32
f_size2= 16
Xtrain_reshaped = Xtrain.reshape(tot_train_examples,width,height,channels)
Xval_reshaped = Xval.reshape(tot_test_examples,width,height,channels)
# #### Inversione labels ####
index1 = np.where(ytest == 2)
index2 = np.where(ytest == 7)
# index1 = np.where(ytrain == 5)
# index2 = np.where(ytrain == 6)
index1 = index1[0][0: int(index1[0].shape[0])]
ytest[index1] = 7
# ytrain[index1] = 6
index2 = index2[0][0: int(index2[0].shape[0])]
ytest[index2] = 2
# ytrain[index2] = 5
# ################################
print('New shape ',Xtrain_reshaped[0].shape)
y_train_cat = to_categorical(ytrain)
y_val_cat = to_categorical(yval)
print(y_train_cat[0])
indexes_df = genfromtxt("Cycle4/rep"+rep+"/sel_indexes.csv",delimiter=',',dtype=int)
print(len(indexes_df))
Xtrain = np.concatenate((Xtrain, Xval))
ytrain = np.concatenate((ytrain, yval))
print(Xtest.shape)
first=True
Xtrain = np.concatenate((Xtrain, Xtest[indexes_df]))
ytrain = np.concatenate((ytrain, ytest[indexes_df]))
tot_train_examples = tot_train_examples + 500
Xtrain, Xval, ytrain, yval = train_test_split(Xtrain, ytrain, train_size=tot_train_examples, random_state=rand_seed)
Xtrain_reshaped = Xtrain.reshape(tot_train_examples,width,height,channels)
Xval_reshaped = Xval.reshape(tot_test_examples,width,height,channels)
y_train_cat = to_categorical(ytrain)
y_val_cat = to_categorical(yval)
# print(Xtrain.shape)
# print(y_train_cat.shape)
# print("NON VA BENE!!! NON MI TROVO CON GLI OUTPUT")
# print(indexes_df)
# print(Xtest[indexes_df].shape)
# print(ytest[indexes_df].shape)
# print(ytest[indexes_df])
#Cicli post prima mutazione
#Cycle 5
Xtest, X_remaining, ytest, y_remaining = train_test_split(X_remaining, y_remaining, train_size=test, random_state=rand_seed)
# #### Inversione labels ####
index1 = np.where(ytest == 2)
index2 = np.where(ytest == 7)
# index1 = np.where(ytrain == 5)
# index2 = np.where(ytrain == 6)
index1 = index1[0][0: int(index1[0].shape[0])]
ytest[index1] = 7
# ytrain[index1] = 6
index2 = index2[0][0: int(index2[0].shape[0])]
ytest[index2] = 2
# ytrain[index2] = 5
# ################################
indexes_df = genfromtxt("Cycle5/rep"+rep+"/sel_indexes.csv",delimiter=',',dtype=int)
print(len(indexes_df))
Xtrain = np.concatenate((Xtrain, Xval))
ytrain = np.concatenate((ytrain, yval))
print(Xtest.shape)
first=True
Xtrain = np.concatenate((Xtrain, Xtest[indexes_df]))
ytrain = np.concatenate((ytrain, ytest[indexes_df]))
tot_train_examples = tot_train_examples +500
Xtrain, Xval, ytrain, yval = train_test_split(Xtrain, ytrain, train_size=tot_train_examples, random_state=rand_seed)
Xtrain_reshaped = Xtrain.reshape(tot_train_examples,width,height,channels)
Xval_reshaped = Xval.reshape(tot_test_examples,width,height,channels)
y_train_cat = to_categorical(ytrain)
y_val_cat = to_categorical(yval)
# print(Xtrain.shape)
# print(y_train_cat.shape)
#Cycle 6
Xtest, X_remaining, ytest, y_remaining = train_test_split(X_remaining, y_remaining, train_size=test, random_state=rand_seed)
# #### Inversione labels ####
index1 = np.where(ytest == 2)
index2 = np.where(ytest == 7)
# index1 = np.where(ytrain == 5)
# index2 = np.where(ytrain == 6)
index1 = index1[0][0: int(index1[0].shape[0])]
ytest[index1] = 7
# ytrain[index1] = 6
index2 = index2[0][0: int(index2[0].shape[0])]
ytest[index2] = 2
# ytrain[index2] = 5
# ################################
# model = Sequential()
# model.add(Conv2D(6, kernel_size=(5, 5), strides=(1, 1), activation='tanh', input_shape=(28,28,1), padding="same"))
# model.add(AveragePooling2D(pool_size=(2, 2), strides=(1, 1), padding='valid'))
# model.add(Conv2D(16, kernel_size=(5, 5), strides=(1, 1), activation='tanh', padding='valid'))
# model.add(AveragePooling2D(pool_size=(2, 2), strides=(2, 2), padding='valid'))
# model.add(Conv2D(120, kernel_size=(5, 5), strides=(1, 1), activation='tanh', padding='valid'))
# model.add(Flatten())
# model.add(Dense(84, activation='tanh'))
# model.add(Dense(10, activation='softmax'))
# model.compile(loss=keras.losses.categorical_crossentropy, optimizer='SGD', metrics=["accuracy"])
# history = model.fit(Xtrain_reshaped, y_train_cat, validation_data=(Xval_reshaped, y_val_cat), epochs=12,batch_size=128,shuffle=True)
# model.save(path+"/modelC_loop_mutation.h5")
model = load_model(path+"/modelC_loop_mutation.h5")
Xtest_reshaped = Xtest.reshape(test,width,height,channels)
y_test_cat = to_categorical(ytest)
print(model.evaluate(Xval_reshaped,y_val_cat))
print(model.evaluate(Xtest_reshaped,y_test_cat))
classification_v = model.predict_classes(Xval_reshaped)
#print(classification_v)
score_final_v = model.predict(Xval_reshaped)
classification = model.predict_classes(Xtest_reshaped)
#print(classification)
score_final = model.predict(Xtest_reshaped)
trainingset=pd.DataFrame()
for i in range(0, tot_train_examples):
ma = np.matrix(Xtrain_reshaped[i])
ar = ma.flatten()
res = str(ar)[1:-1]
res2 = str(res)[1:-1]
array=pd.DataFrame(ar)
array.insert(784,'label',ytrain[i])
trainingset=trainingset.append(array)
trainingset.to_csv(path+'/training.csv', index = False, header = True)
print("training.csv completed")
#validation set csv printing
validationset=pd.DataFrame()
for i in range(0, val):
ma = np.matrix(Xval_reshaped[i])
ar = ma.flatten()
res = str(ar)[1:-1]
res2 = str(res)[1:-1]
array=pd.DataFrame(ar)
array.insert(784,'label',yval[i])
array.insert(785,'SUT',classification_v[i])
array.insert(786,'PredictedLabel0',score_final_v[i][0])
array.insert(787,'PredictedLabel1',score_final_v[i][1])
array.insert(788,'PredictedLabel2',score_final_v[i][2])
array.insert(789,'PredictedLabel3',score_final_v[i][3])
array.insert(790,'PredictedLabel4',score_final_v[i][4])
array.insert(791,'PredictedLabel5',score_final_v[i][5])
array.insert(792,'PredictedLabel6',score_final_v[i][6])
array.insert(793,'PredictedLabel7',score_final_v[i][7])
array.insert(794,'PredictedLabel8',score_final_v[i][8])
array.insert(795,'PredictedLabel9',score_final_v[i][9])
validationset=validationset.append(array)
validationset.to_csv(path+'/validation.csv', index = False, header = True)
print("validation.csv completed")
#test set csv printing
testset=pd.DataFrame()
for i in range(0, test):
#print(Xtest_reshaped[i].shape)
ma = np.matrix(Xtest_reshaped[i])
ar = ma.flatten()
res = str(ar)[1:-1]
res2 = str(res)[1:-1]
# print(res2)
# print(ytest[0])
array=pd.DataFrame(ar)
array.insert(784,'label',ytest[i])
array.insert(785,'SUT',classification[i])
array.insert(786,'PredictedLabel0',score_final[i][0])
array.insert(787,'PredictedLabel1',score_final[i][1])
array.insert(788,'PredictedLabel2',score_final[i][2])
array.insert(789,'PredictedLabel3',score_final[i][3])
array.insert(790,'PredictedLabel4',score_final[i][4])
array.insert(791,'PredictedLabel5',score_final[i][5])
array.insert(792,'PredictedLabel6',score_final[i][6])
array.insert(793,'PredictedLabel7',score_final[i][7])
array.insert(794,'PredictedLabel8',score_final[i][8])
array.insert(795,'PredictedLabel9',score_final[i][9])
if(ytest[i] < 5):
array.insert(796,'EP', 0)
else:
array.insert(796,'EP', 1)
if(ytest[i] in (0, 3, 6, 8, 9)):
array.insert(797,'FP', 0)
elif(ytest[i] in (1, 4, 7)):
array.insert(797,'FP', 1)
else:
array.insert(797,'FP', 2)
testset=testset.append(array)
testset.to_csv(path+'/test.csv', index = False, header = True)
print("test.csv completed")