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index.html
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<!DOCTYPE html>
<html lang="en">
<head>
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<meta name="author" content="Robert Gilmore and Shaurita Hutchins">
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<meta property="og:description" content="We snake through bioinformatics topics using Python and R programming with the aim of reproducibility and scalability.">
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<img src="img/logo.png" alt="Datasnakes Logo" style="width:250px;height:250px;">
<br>
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<h2 class="section-heading">What We Do</h2>
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<p class="large text-muted">We snake through bioinformatics topics using Python and R programming with the aim of reproducibility and scalability. Mainly, our focus is on creating Rshiny apps, python libraries, command-line tools, and genomics pipelines.</p>
<p class="large text-muted">Here are a few topics we're interested in:
</p>
<div class="sdhcenter large text-muted">
<ul class="large text-muted">
<li>RNASeq analysis & visualization</li>
<li>Orthology inference</li>
<li>R package management and R environment management</li>
<li>Development of command-line tools for genomics pipelines</li>
<li>Improving the reproducibility of microbiome analysis</li>
</ul>
</div>
<br>
<p class="large text-muted">We recently (October 2018) participated in <a href="https://t.co/W9ZCQ9QwUy" onclick="window.open(this.href); return false;" onkeypress="window.open(this.href); return false;">hackseq18</a> in which our project, <a href="https://www.getberi.site/" onclick="window.open(this.href); return false;" onkeypress="window.open(this.href); return false;">beRi</a>, was the winner!</p>
<blockquote class="twitter-tweet tw-align-center" data-cards="hidden" data-lang="en"><p lang="en" dir="ltr">w00t w00t Congratz to team beRi for being selected the <a href="https://twitter.com/hashtag/hackseq18?src=hash&ref_src=twsrc%5Etfw">#hackseq18</a> winners!<a href="https://t.co/I43sRmRTNz">https://t.co/I43sRmRTNz</a><a href="https://twitter.com/hashtag/HackTheGenome?src=hash&ref_src=twsrc%5Etfw">#HackTheGenome</a> <a href="https://twitter.com/hashtag/R4Lyfe?src=hash&ref_src=twsrc%5Etfw">#R4Lyfe</a></p>— hackseq (@hackseq) <a href="https://twitter.com/hackseq/status/1051628032228655104?ref_src=twsrc%5Etfw">October 15, 2018</a></blockquote>
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<h2 class="section-heading">Github Projects</h2>
<h3 class="section-subheading text-muted">Here are a few of our github projects.</h3>
</div>
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<span class="fa-stack fa-4x">
<i class="fa fa-circle fa-stack-2x"></i>
<a href="https://www.getberi.site/" onclick="window.open(this.href); return false;"
onkeypress="window.open(this.href); return false;"><i class="fa fa-github fa-stack-1x fa-inverse"></i></a>
</span>
<h4 class="service-heading">beRi</h4>
<p class="text-muted">beRi is a set of Python packages which is composed of an R virtual environment manager (<a href="https://github.com/datasnakes/renv">renv</a>), an R installation manager (<a href="https://github.com/datasnakes/rinse">rinse</a>), and an R utility tool for installing and managing R packages and R package libraries (<a href="https://github.com/datasnakes/rut">rut</a>).</p>
</div>
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<i class="fa fa-circle fa-stack-2x"></i>
<a href="OrthoEvolution/" onclick="window.open(this.href); return false;"
onkeypress="window.open(this.href); return false;"><i class="fa fa-github fa-stack-1x fa-inverse"></i></a>
</span>
<h4 class="service-heading">OrthoEvolution</h4>
<p class="text-muted">OrthoEvolution is an easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes.</p>
</div>
<div class="col-sm-4">
<span class="fa-stack fa-4x">
<i class="fa fa-circle fa-stack-2x"></i>
<a href="htseq-count-cluster/" onclick="window.open(this.href); return false;"
onkeypress="window.open(this.href); return false;"><i class="fa fa-github fa-stack-1x fa-inverse"></i></a>
</span>
<h4 class="service-heading">htseq-count-cluster</h4>
<p class="text-muted">A python cli/wrapper for running multiple qsub jobs with HTSeq's htseq-count script on a SGE/SGI cluster.</p>
</div>
</div>
</div>
</section>
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<h2 class="section-heading">The Datasnakes</h2>
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<br/>
<!-- Rob's Section -->
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<div class="col-sm-6">
<div class="team-member">
<img src="img/team/rg.jpg" class="img-responsive img-circle" alt="">
<!-- Photo-->
<h4>Robert Gilmore</h4>
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<p class="text-muted">Biomedical Engineer, Back-End Developer, & Datasnakes Co-founder</p>
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</ul>
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<img src="img/team/sdh.jpg" class="img-responsive img-circle" alt="">
<h4>Shaurita Hutchins</h4>
<p class="text-muted">Biologist, Front-End Developer, & Datasnakes Co-founder</p>
<ul class="list-inline social-buttons">
<li><a href="https://www.linkedin.com/in/sdhutchins/" onclick="window.open(this.href); return false;" onkeypress="window.open(this.href); return false;"><i class="fa fa-linkedin"></i></a>
</li>
<li><a href="mailto:[email protected]"><i class="fa fa-envelope"></i></a>
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<li><a href="https://github.com/sdhutchins" onclick="window.open(this.href); return false;" onkeypress="window.open(this.href); return false;"><i class="fa fa-github"></i></a>
</li>
</ul>
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</div>
</div>
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<img src="img/team/sl.jpg" class="img-responsive img-circle" alt="">
<!-- Photo-->
<h4>Santina Lin</h4>
<!-- Name -->
<p class="text-muted">Software Engineer @ Microsoft & Bioinformatician</p></p>
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</li>
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<!-- Bruno's Section -->
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<img src="img/team/bg.jpg" class="img-responsive img-circle" alt="">
<h4>Bruno Grande</h4>
<p class="text-muted">Ph.D. Candidate in Cancer Genomics & hackseq Co-Founder</p>
<ul class="list-inline social-buttons">
<li><a href="https://www.linkedin.com/in/brunogrande/?originalSubdomain=ca" onclick="window.open(this.href); return false;" onkeypress="window.open(this.href); return false;"><i class="fa fa-linkedin"></i></a>
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<li><a href="mailto:[email protected]"><i class="fa fa-envelope"></i></a>
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</li>
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<div class="col-lg-8 col-lg-offset-2 text-center">
<p class="large text-muted">Feel free to email us at <a href="mailto:[email protected]">[email protected]</a> for information about our current team projects or for a consultation.</p>
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