project_pipeline_interface.yaml

pipeline_name: PEPATAC
output_schema: pepatac_output_schema.yaml
project_interface:
  command_template: >
    {looper.piface_dir}/pipelines/pepatac_collator.py 
    --config {looper.pep_config}
    -O {looper.results_subdir}
    -P {compute.cores}
    -M {compute.mem}
    -n {project.name}
    -r {looper.results_subdir}
compute:
  bulker_crate: databio/pepatac:1.0.10
  size_dependent_variables: resources-project.tsv

bioconductor:
  readFunName: readPepatacPeakBeds
  readFunPath: BiocProject/readPepatacPeakBeds.R