diff --git a/.envrc b/.envrc index e618b742..70f83951 100644 --- a/.envrc +++ b/.envrc @@ -1,2 +1,5 @@ use flake -watch_file poetry.lock + +watch_file uv.lock +watch_file nix/pyproject-overrides.nix +watch_file nix/overlay.nix diff --git a/.flake8 b/.flake8 deleted file mode 100644 index b6d832c1..00000000 --- a/.flake8 +++ /dev/null @@ -1,3 +0,0 @@ -[flake8] -ignore = E203,W503,E731 -max-line-length = 88 diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 0c902b3e..6413cc00 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -12,159 +12,149 @@ concurrency: cancel-in-progress: true jobs: - nix: - strategy: - fail-fast: false - matrix: - os: - - ubuntu-latest - python-version: - - "39" - - "310" - - "311" - - "312" - include: - - os: macos-latest - python-version: "39" - - os: macos-latest - python-version: "312" - - runs-on: ${{ matrix.os }} - steps: - - uses: actions/checkout@v4 - - - uses: cachix/install-nix-action@08dcb3a5e62fa31e2da3d490afc4176ef55ecd72 # v30 - with: - nix_path: nixpkgs=channel:nixos-unstable-small - - - uses: cachix/cachix-action@v15 - with: - name: numbsql - authToken: ${{ secrets.CACHIX_AUTH_TOKEN }} - extraPullNames: nix-community,poetry2nix - - - name: build and test - run: nix build --no-link --keep-going '.#numbsql${{ matrix.python-version }}' - - - name: show closure size - run: | - set -euo pipefail - - nix path-info -Shr '.#numbsql${{ matrix.python-version }}' | sort -h -k2 - - conda: + # nix: + # strategy: + # fail-fast: false + # matrix: + # os: + # - ubuntu-latest + # python-version: + # - "310" + # - "311" + # - "312" + # runs-on: ${{ matrix.os }} + # steps: + # - uses: actions/checkout@v4 + # + # - uses: cachix/install-nix-action@v30 + # with: + # nix_path: nixpkgs=channel:nixos-unstable-small + # + # - uses: cachix/cachix-action@v15 + # with: + # name: numbsql + # authToken: ${{ secrets.CACHIX_AUTH_TOKEN }} + # extraPullNames: nix-community + # + # - name: build + # run: nix build --no-link --keep-going '.#numbsql${{ matrix.python-version }}' + # + # - name: test + # run: nix build --no-link --keep-going '.#numbsql${{ matrix.python-version }}.passthru.tests.pytest' + # + # - name: show closure size + # run: | + # set -euo pipefail + # + # nix path-info -Shr '.#numbsql${{ matrix.python-version }}' | sort -h -k2 + uv: runs-on: ${{ matrix.os }} strategy: fail-fast: false matrix: os: - - ubuntu-latest + # - ubuntu-latest - windows-latest - spec: - - deps: - python-version: "3.9" - numba: "0.53" - llvmlite: "0.36" - - env: - NUMBA_CAPTURED_ERRORS: new_style - deps: - python-version: "3.10" - - env: - NUMBA_CAPTURED_ERRORS: new_style - deps: - python-version: "3.11" - - env: - NUMBA_CAPTURED_ERRORS: new_style - deps: - python-version: "3.12" - defaults: - run: - shell: bash -l {0} + - macos-latest + python-version: + # - "3.10" + # - "3.11" + - "3.12" steps: - uses: actions/checkout@v4 - uses: actions/setup-python@v5 - id: install_python with: - python-version: ${{ matrix.spec.deps.python-version }} + python-version: ${{ matrix.python-version }} + - uses: astral-sh/setup-uv@v3 - - run: pip3 install poetry2conda poetry + - name: show sqlite version + run: uv run python -c 'import sqlite3; print(sqlite3.sqlite_version)' - - run: poetry add --lock "numba@${{ matrix.spec.deps.numba }}" "llvmlite@${{ matrix.spec.deps.llvmlite }}" --python "${{ steps.install_python.outputs.python-version }}" - if: ${{ matrix.spec.deps.numba != null && matrix.spec.deps.llvmlite != null }} + - name: show C API libversion pre installation + run: uv run python -c 'from numbsql.sqlite import sqlite3_libversion; print(sqlite3_libversion().decode())' - - run: poetry2conda --dev pyproject.toml - | tee environment.yaml + - name: show library pre installation + if: matrix.os == 'windows-latest' + run: uv run python -c 'import ctypes.util as u; print(u.find_library("sqlite3"))' - - uses: conda-incubator/setup-miniconda@v3 - with: - mamba-version: "*" - miniforge-variant: Mambaforge - miniforge-version: latest - channel-priority: strict - activate-environment: numbsql - python-version: ${{ matrix.spec.deps.python-version }} - environment-file: environment.yaml + - name: install sqlite on windows + if: matrix.os == 'windows-latest' + run: choco install sqlite - - run: pip install . + - name: show os sqlite version + run: sqlite3 -version - - run: pytest --numprocesses auto - env: - NUMBA_CAPTURED_ERRORS: ${{ matrix.spec.env.NUMBA_CAPTURED_ERRORS }} + - name: show sqlite3 path + shell: bash + run: which sqlite3 - dry-run-release: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v4 - with: - fetch-depth: 0 - - - uses: cachix/install-nix-action@08dcb3a5e62fa31e2da3d490afc4176ef55ecd72 # v30 - with: - nix_path: nixpkgs=channel:nixos-unstable-small - - - uses: cachix/cachix-action@v15 - with: - name: numbsql - extraPullNames: nix-community,poetry2nix - - - name: setup git info - run: | - set -euo pipefail - - git config user.name 'phillip-ground[bot]' - git config user.email 'phillip-ground[bot]@users.noreply.github.com' - - - name: dry run semantic-release - run: ./ci/release/dry_run.sh + - name: show C API libversion post installation + run: uv run python -c 'from numbsql.sqlite import sqlite3_libversion; print(sqlite3_libversion().decode())' - release: - runs-on: ubuntu-latest - needs: - - conda - - dry-run-release - - nix - steps: - - uses: actions/create-github-app-token@v1.11.0 - id: generate_token - with: - app-id: ${{ secrets.APP_ID }} - private-key: ${{ secrets.APP_PRIVATE_KEY }} - - - uses: actions/checkout@v4 - with: - fetch-depth: 0 - token: ${{ steps.generate_token.outputs.token }} - - - uses: cachix/install-nix-action@08dcb3a5e62fa31e2da3d490afc4176ef55ecd72 # v30 - with: - nix_path: nixpkgs=channel:nixos-unstable-small - - - uses: cachix/cachix-action@v15 - with: - name: numbsql - extraPullNames: nix-community,poetry2nix + - name: show library post installation + if: matrix.os == 'windows-latest' + run: uv run python -c 'import ctypes.util as u; print(u.find_library("sqlite3"))' - - name: run semantic-release - run: ./ci/release/run.sh + - name: run tests + run: uv run --group tests pytest -vv -x --randomly-dont-reorganize env: - POETRY_PYPI_TOKEN_PYPI: ${{ secrets.PYPI_TOKEN }} - GITHUB_TOKEN: ${{ steps.generate_token.outputs.token }} + NUMBA_CAPTURED_ERRORS: new_style + + # dry-run-release: + # runs-on: ubuntu-latest + # steps: + # - uses: actions/checkout@v4 + # with: + # fetch-depth: 0 + # + # - uses: cachix/install-nix-action@08dcb3a5e62fa31e2da3d490afc4176ef55ecd72 # v30 + # with: + # nix_path: nixpkgs=channel:nixos-unstable-small + # + # - uses: cachix/cachix-action@v15 + # with: + # name: numbsql + # extraPullNames: nix-community + # + # - name: setup git info + # run: | + # set -euo pipefail + # + # git config user.name 'phillip-ground[bot]' + # git config user.email 'phillip-ground[bot]@users.noreply.github.com' + # + # - name: dry run semantic-release + # run: ./ci/release/dry_run.sh + + # release: + # runs-on: ubuntu-latest + # needs: + # - uv + # # - dry-run-release + # # - nix + # steps: + # - uses: actions/create-github-app-token@v1.11.0 + # id: generate_token + # with: + # app-id: ${{ secrets.APP_ID }} + # private-key: ${{ secrets.APP_PRIVATE_KEY }} + # + # - uses: actions/checkout@v4 + # with: + # fetch-depth: 0 + # token: ${{ steps.generate_token.outputs.token }} + # + # - uses: cachix/install-nix-action@08dcb3a5e62fa31e2da3d490afc4176ef55ecd72 # v30 + # with: + # nix_path: nixpkgs=channel:nixos-unstable-small + # + # - uses: cachix/cachix-action@v15 + # with: + # name: numbsql + # extraPullNames: nix-community + # + # - name: run semantic-release + # run: ./ci/release/run.sh + # env: + # UV_PUBLISH_TOKEN: ${{ secrets.PYPI_TOKEN }} + # GITHUB_TOKEN: ${{ steps.generate_token.outputs.token }} diff --git a/README.md b/README.md index ee113fb5..d08a50b8 100644 --- a/README.md +++ b/README.md @@ -10,14 +10,15 @@ integers might be unsafe, then you shouldn't use this library. ## Requirements -* Python `>=3.7` +* Python `>=3.9` * `numba` +* `llvmlite` -Use `nix-shell` from the repository to avoid dependency hell. +Use `nix develop` from the repository root to avoid dependency hell. ## Installation -* `poetry install` +* `pip install numbsql` ## Examples diff --git a/ci/release/prepare.sh b/ci/release/prepare.sh index a9be084b..911bd736 100755 --- a/ci/release/prepare.sh +++ b/ci/release/prepare.sh @@ -1,5 +1,5 @@ #!/usr/bin/env nix-shell -#!nix-shell -p cacert gnugrep unzip poetry nix -i bash +#!nix-shell -p cacert gnugrep unzip uv nix -i bash # shellcheck shell=bash set -euo pipefail @@ -7,10 +7,10 @@ set -euo pipefail version="${1}" # set version -poetry version "$version" +uvx --from=toml-cli toml set --toml-path=pyproject.toml project.version "$version" # build artifacts -poetry build +uv build # ensure that the built wheel has the correct version number unzip -p "dist/numbsql-${version}-py3-none-any.whl" numbsql/__init__.py | grep -q "__version__ = \"$version\"" diff --git a/ci/release/publish.sh b/ci/release/publish.sh index 5a145f6a..20190ea1 100755 --- a/ci/release/publish.sh +++ b/ci/release/publish.sh @@ -1,7 +1,7 @@ #!/usr/bin/env nix-shell -#!nix-shell --pure --keep POETRY_PYPI_TOKEN_PYPI -p cacert poetry -i bash +#!nix-shell --pure --keep UV_PUBLISH_TOKEN -p cacert uv -i bash # shellcheck shell=bash set -euo pipefail -poetry publish +uv publish diff --git a/ci/release/run.sh b/ci/release/run.sh index abe7e08c..ae0961bc 100755 --- a/ci/release/run.sh +++ b/ci/release/run.sh @@ -1,5 +1,5 @@ #!/usr/bin/env nix-shell -#!nix-shell -p cacert poetry git nodejs nix -i bash +#!nix-shell -p cacert uv git nodejs nix -i bash # shellcheck shell=bash set -euo pipefail diff --git a/ci/release/verify.sh b/ci/release/verify.sh index fc24fbbc..5dfabda1 100755 --- a/ci/release/verify.sh +++ b/ci/release/verify.sh @@ -1,15 +1,15 @@ #!/usr/bin/env nix-shell -#!nix-shell -I nixpkgs=channel:nixos-unstable-small --pure --keep POETRY_PYPI_TOKEN_PYPI -p poetry -i bash +#!nix-shell -I nixpkgs=channel:nixos-unstable-small --pure --keep UV_PUBLISH_TOKEN -p uv -i bash # shellcheck shell=bash set -euo pipefail dry_run="${1:-false}" -# verify pyproject.toml -poetry check +# verify pyproject.toml and lock file +uv lock --locked # verify that we have a token available to push to pypi using set -u if [ "${dry_run}" = "false" ]; then - : "${POETRY_PYPI_TOKEN_PYPI}" + : "${UV_PUBLISH_TOKEN}" fi diff --git a/flake.lock b/flake.lock index d2519375..dfb439df 100644 --- a/flake.lock +++ b/flake.lock @@ -50,30 +50,33 @@ "type": "github" } }, - "gitignore": { + "git-hooks": { "inputs": { + "flake-compat": "flake-compat_2", + "gitignore": "gitignore", "nixpkgs": [ "nixpkgs" - ] + ], + "nixpkgs-stable": "nixpkgs-stable" }, "locked": { - "lastModified": 1709087332, - "narHash": "sha256-HG2cCnktfHsKV0s4XW83gU3F57gaTljL9KNSuG6bnQs=", - "owner": "hercules-ci", - "repo": "gitignore.nix", - "rev": "637db329424fd7e46cf4185293b9cc8c88c95394", + "lastModified": 1731363552, + "narHash": "sha256-vFta1uHnD29VUY4HJOO/D6p6rxyObnf+InnSMT4jlMU=", + "owner": "cachix", + "repo": "git-hooks.nix", + "rev": "cd1af27aa85026ac759d5d3fccf650abe7e1bbf0", "type": "github" }, "original": { - "owner": "hercules-ci", - "repo": "gitignore.nix", + "owner": "cachix", + "repo": "git-hooks.nix", "type": "github" } }, - "gitignore_2": { + "gitignore": { "inputs": { "nixpkgs": [ - "pre-commit-hooks", + "git-hooks", "nixpkgs" ] }, @@ -91,34 +94,33 @@ "type": "github" } }, - "nix-github-actions": { + "gitignore_2": { "inputs": { "nixpkgs": [ - "poetry2nix", "nixpkgs" ] }, "locked": { - "lastModified": 1729742964, - "narHash": "sha256-B4mzTcQ0FZHdpeWcpDYPERtyjJd/NIuaQ9+BV1h+MpA=", - "owner": "nix-community", - "repo": "nix-github-actions", - "rev": "e04df33f62cdcf93d73e9a04142464753a16db67", + "lastModified": 1709087332, + "narHash": "sha256-HG2cCnktfHsKV0s4XW83gU3F57gaTljL9KNSuG6bnQs=", + "owner": "hercules-ci", + "repo": "gitignore.nix", + "rev": "637db329424fd7e46cf4185293b9cc8c88c95394", "type": "github" }, "original": { - "owner": "nix-community", - "repo": "nix-github-actions", + "owner": "hercules-ci", + "repo": "gitignore.nix", "type": "github" } }, "nixpkgs": { "locked": { - "lastModified": 1729939720, - "narHash": "sha256-F7jTiYAxLF0Hcv92Xa5dIufzH1plmS9nbwO50j/9Kxw=", + "lastModified": 1731474235, + "narHash": "sha256-wcteA0D0PKmULhuHKhIsnXpngAAmbMMrWxvGwi/eITM=", "owner": "NixOS", "repo": "nixpkgs", - "rev": "c93e398e719021a9ad9da56af1589d23029f3cea", + "rev": "1641c8d30380e2507a5ccff8f4a4800311bdfe5a", "type": "github" }, "original": { @@ -144,52 +146,23 @@ "type": "github" } }, - "poetry2nix": { + "pyproject-nix": { "inputs": { - "flake-utils": [ - "flake-utils" - ], - "nix-github-actions": "nix-github-actions", "nixpkgs": [ "nixpkgs" - ], - "systems": "systems_2", - "treefmt-nix": "treefmt-nix" + ] }, "locked": { - "lastModified": 1731172420, - "narHash": "sha256-DpFLNJIu7fcbaSEQIf/x5j6YJqUjhXdq/pTGFqYNVZI=", + "lastModified": 1731223003, + "narHash": "sha256-hFf8/IeZKPUubMC452Mm+JiAEnvcw/a4Cvn2bcpeJqs=", "owner": "nix-community", - "repo": "poetry2nix", - "rev": "5a0a462cc6d346198582a245ea8eddb4e115e631", + "repo": "pyproject.nix", + "rev": "359dd9cd562730bbd31ab164832aae4dacd9c302", "type": "github" }, "original": { "owner": "nix-community", - "repo": "poetry2nix", - "type": "github" - } - }, - "pre-commit-hooks": { - "inputs": { - "flake-compat": "flake-compat_2", - "gitignore": "gitignore_2", - "nixpkgs": [ - "nixpkgs" - ], - "nixpkgs-stable": "nixpkgs-stable" - }, - "locked": { - "lastModified": 1730814269, - "narHash": "sha256-fWPHyhYE6xvMI1eGY3pwBTq85wcy1YXqdzTZF+06nOg=", - "owner": "cachix", - "repo": "pre-commit-hooks.nix", - "rev": "d70155fdc00df4628446352fc58adc640cd705c2", - "type": "github" - }, - "original": { - "owner": "cachix", - "repo": "pre-commit-hooks.nix", + "repo": "pyproject.nix", "type": "github" } }, @@ -197,10 +170,11 @@ "inputs": { "flake-compat": "flake-compat", "flake-utils": "flake-utils", - "gitignore": "gitignore", + "git-hooks": "git-hooks", + "gitignore": "gitignore_2", "nixpkgs": "nixpkgs", - "poetry2nix": "poetry2nix", - "pre-commit-hooks": "pre-commit-hooks" + "pyproject-nix": "pyproject-nix", + "uv2nix": "uv2nix" } }, "systems": { @@ -218,38 +192,26 @@ "type": "github" } }, - "systems_2": { - "locked": { - "lastModified": 1681028828, - "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=", - "owner": "nix-systems", - "repo": "default", - "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e", - "type": "github" - }, - "original": { - "id": "systems", - "type": "indirect" - } - }, - "treefmt-nix": { + "uv2nix": { "inputs": { "nixpkgs": [ - "poetry2nix", "nixpkgs" + ], + "pyproject-nix": [ + "pyproject-nix" ] }, "locked": { - "lastModified": 1730120726, - "narHash": "sha256-LqHYIxMrl/1p3/kvm2ir925tZ8DkI0KA10djk8wecSk=", - "owner": "numtide", - "repo": "treefmt-nix", - "rev": "9ef337e492a5555d8e17a51c911ff1f02635be15", + "lastModified": 1731455524, + "narHash": "sha256-6uAgsZC5CChUtbLb9+MnNxhwL8uITbEh5zhPtQC3u8E=", + "owner": "adisbladis", + "repo": "uv2nix", + "rev": "e68500c8353abaab5bf2c789105eebd9e435fe76", "type": "github" }, "original": { - "owner": "numtide", - "repo": "treefmt-nix", + "owner": "adisbladis", + "repo": "uv2nix", "type": "github" } } diff --git a/flake.nix b/flake.nix index 42714ece..ecb11dd1 100644 --- a/flake.nix +++ b/flake.nix @@ -16,16 +16,21 @@ nixpkgs.url = "github:NixOS/nixpkgs/nixos-unstable-small"; - poetry2nix = { - url = "github:nix-community/poetry2nix"; + pyproject-nix = { + url = "github:nix-community/pyproject.nix"; + inputs.nixpkgs.follows = "nixpkgs"; + }; + + uv2nix = { + url = "github:adisbladis/uv2nix"; inputs = { + pyproject-nix.follows = "pyproject-nix"; nixpkgs.follows = "nixpkgs"; - flake-utils.follows = "flake-utils"; }; }; - pre-commit-hooks = { - url = "github:cachix/pre-commit-hooks.nix"; + git-hooks = { + url = "github:cachix/git-hooks.nix"; inputs.nixpkgs.follows = "nixpkgs"; }; }; @@ -35,77 +40,15 @@ , flake-utils , gitignore , nixpkgs - , poetry2nix - , pre-commit-hooks + , uv2nix + , git-hooks + , pyproject-nix , ... }: - let - getOverrides = pkgs: pkgs.poetry2nix.overrides.withDefaults ( - import ./poetry-overrides.nix - ); - in { overlays.default = nixpkgs.lib.composeManyExtensions [ - poetry2nix.overlays.default gitignore.overlay - (pkgs: super: { - prettierTOML = pkgs.writeShellScriptBin "prettier" '' - ${pkgs.nodePackages.prettier}/bin/prettier \ - --plugin-search-dir "${pkgs.nodePackages.prettier-plugin-toml}/lib" \ - "$@" - ''; - } // (super.lib.listToAttrs ( - super.lib.concatMap - (py: - let - python = pkgs."python${py}"; - in - [ - { - name = "numbsql${py}"; - value = pkgs.poetry2nix.mkPoetryApplication { - inherit python; - - projectDir = ./.; - src = pkgs.gitignoreSource ./.; - preferWheels = true; - - buildInputs = [ pkgs.sqlite ]; - - overrides = getOverrides pkgs; - - NUMBA_CAPTURED_ERRORS = "new_style"; - - preCheck = '' - export HOME="$(mktemp -d)" - '' + pkgs.lib.optionalString pkgs.stdenv.isDarwin '' - export DYLD_LIBRARY_PATH=${pkgs.sqlite.out}/lib - ''; - - checkPhase = '' - runHook preCheck - pytest --numprocesses auto - runHook postCheck - ''; - - pythonImportsCheck = [ "numbsql" ]; - }; - } - { - name = "numbsqlDevEnv${py}"; - value = pkgs.poetry2nix.mkPoetryEnv { - inherit python; - overrides = getOverrides pkgs; - projectDir = ./.; - preferWheels = true; - editablePackageSources = { - numbsql = ./numbsql; - }; - }; - } - ]) - [ "39" "310" "311" "312" ] - ))) + (import ./nix/overlay.nix { inherit uv2nix pyproject-nix; }) ]; } // ( flake-utils.lib.eachDefaultSystem ( @@ -118,7 +61,6 @@ inherit (pkgs) lib; in rec { - packages.numbsql39 = pkgs.numbsql39; packages.numbsql310 = pkgs.numbsql310; packages.numbsql311 = pkgs.numbsql311; packages.numbsql312 = pkgs.numbsql312; @@ -128,7 +70,7 @@ defaultPackage = packages.numbsql; checks = { - pre-commit-check = pre-commit-hooks.lib.${system}.run { + pre-commit = git-hooks.lib.${system}.run { src = ./.; hooks = { ruff.enable = true; @@ -161,10 +103,10 @@ devShell = pkgs.mkShell { - name = "numbsql"; + inherit (pkgs.numbsqlDevEnv312) name; nativeBuildInputs = with pkgs; [ numbsqlDevEnv312 - poetry + uv prettierTOML # useful for testing sqlite things with a sane CLI, i.e., with # readline @@ -172,7 +114,7 @@ # sqlite is necessary to ensure the availability of libsqlite3 sqlite ]; - inherit (self.checks.${system}.pre-commit-check) shellHook; + inherit (self.checks.${system}.pre-commit) shellHook; NUMBA_CAPTURED_ERRORS = "new_style"; } // pkgs.lib.optionalAttrs pkgs.stdenv.isDarwin { DYLD_LIBRARY_PATH = "${pkgs.sqlite.out}/lib"; diff --git a/nix/overlay.nix b/nix/overlay.nix new file mode 100644 index 00000000..1a766b4b --- /dev/null +++ b/nix/overlay.nix @@ -0,0 +1,95 @@ +{ uv2nix, pyproject-nix }: final: prev: +let + pkgs = final; + inherit (pkgs) lib; + + # Create package overlay from workspace. + workspace = uv2nix.lib.workspace.loadWorkspace { workspaceRoot = ../.; }; + + envOverlay = workspace.mkPyprojectOverlay { + sourcePreference = "wheel"; + }; + + # Create an overlay enabling editable mode for all local dependencies. + # This is for usage with `nix develop` + editableOverlay = + workspace.mkEditablePyprojectOverlay { + root = "$REPO_ROOT"; + }; + + # Build fixups overlay + pyprojectOverrides = import ./pyproject-overrides.nix { inherit pkgs; }; + + # Adds tests to passthru.tests + testOverlay = import ./tests.nix { + inherit pkgs; + deps = defaultDeps; + }; + + # Default dependencies for env + defaultDeps.numbsql = [ ]; + + mkEnv' = + { + # Python dependency specification + deps + , # Installs the package as an editable package for use with `nix develop`. + # This means that any changes done to your local files do not require a rebuild. + editable + , + }: python: + let + # Construct package set + pythonSet = + # Use base package set from pyproject.nix builders + (pkgs.callPackage pyproject-nix.build.packages { + inherit python; + }).overrideScope + (lib.composeManyExtensions ([ + envOverlay + pyprojectOverrides + ] + ++ lib.optionals editable [ editableOverlay ] + ++ lib.optionals (!editable) [ testOverlay ])); + in + # Build virtual environment + (pythonSet.mkVirtualEnv "numbsql-${python.pythonVersion}" deps).overrideAttrs (_old: { + # Add passthru.tests from numbsql to venv passthru. + # This is used to build tests by CI. + passthru = { + inherit (pythonSet.numbsql.passthru) tests; + }; + }); + + mkEnv = mkEnv' { + deps = defaultDeps; + editable = false; + }; + + mkDevEnv = mkEnv' { + # Enable all dependencies for development shell + deps = workspace.deps.all; + editable = true; + }; +in +{ + prettierTOML = final.writeShellScriptBin "prettier" '' + ${final.nodePackages.prettier}/bin/prettier \ + --plugin-search-dir "${final.nodePackages.prettier-plugin-toml}/lib" \ + "$@" + ''; +} // (prev.lib.listToAttrs ( + prev.lib.concatMap + (py: + [ + { + name = "numbsql${py}"; + value = mkEnv final."python${py}"; + } + { + name = "numbsqlDevEnv${py}"; + value = mkDevEnv final."python${py}"; + } + ]) + [ "310" "311" "312" ] +)) diff --git a/nix/pyproject-overrides.nix b/nix/pyproject-overrides.nix new file mode 100644 index 00000000..02dbf87a --- /dev/null +++ b/nix/pyproject-overrides.nix @@ -0,0 +1,24 @@ +{ pkgs }: final: prev: +let + inherit (pkgs) lib; + inherit (final) resolveBuildSystem; + + addBuildSystems = + pkg: spec: + pkg.overrideAttrs (old: { + nativeBuildInputs = old.nativeBuildInputs ++ resolveBuildSystem spec; + }); + + buildSystemOverrides = { + # $package.$buildDep = [ ]; + # + # e.g.: + # + # packaging.flit-core = [ ]; + }; +in +lib.mapAttrs (name: spec: addBuildSystems prev.${name} spec) buildSystemOverrides // { + numba = prev.numba.overrideAttrs (attrs: { + nativeBuildInputs = attrs.nativeBuildInputs or [ ] ++ [ pkgs.tbb_2021_11 ]; + }); +} diff --git a/nix/tests.nix b/nix/tests.nix new file mode 100644 index 00000000..1a9fb678 --- /dev/null +++ b/nix/tests.nix @@ -0,0 +1,43 @@ +{ pkgs, deps }: +let + inherit (pkgs) stdenv lib; +in +final: prev: { + numbsql = prev.numbsql.overrideAttrs (old: { + passthru = old.passthru // { + tests = old.passthru.tests or { } // { + pytest = + let + pythonEnv = final.mkVirtualEnv "numbsql-test-env" (deps // { + # Use default dependencies from overlay.nix + enabled tests group. + numbsql = deps.numbsql or [ ] ++ [ "tests" ]; + }); + in + stdenv.mkDerivation { + name = "numbsql-test"; + nativeCheckInputs = [ pythonEnv pkgs.sqlite ]; + src = ../.; + doCheck = true; + + preCheck = '' + set -euo pipefail + + HOME="$(mktemp -d)" + export HOME + '' + lib.optionalString stdenv.isDarwin '' + export DYLD_LIBRARY_PATH=${lib.getLib pkgs.sqlite} + ''; + + checkPhase = '' + runHook preCheck + pytest -vv -x --randomly-dont-reorganize + runHook postCheck + ''; + + NUMBA_CAPTURED_ERRORS = "new_style"; + installPhase = "mkdir $out"; + }; + }; + }; + }); +} diff --git a/numbsql/__init__.py b/numbsql/__init__.py index 958c1843..7de32089 100644 --- a/numbsql/__init__.py +++ b/numbsql/__init__.py @@ -214,6 +214,8 @@ def create_aggregate( ) if rc != SQLITE_OK: raise sqlite3.OperationalError(sqlite3_errmsg(sqlite_db)) + except OSError: + raise except Exception: # catch every exception so that we can decrement the reference count # of `is_initialized`, and prevent a memory leak diff --git a/numbsql/scalar.py b/numbsql/scalar.py index 0f6f8e4a..2247a010 100644 --- a/numbsql/scalar.py +++ b/numbsql/scalar.py @@ -42,7 +42,6 @@ def sqlite_udf( 2 >>> add_one(None) is None True - """ if func is None: return functools.partial(sqlite_udf, nogil=nogil, **njit_kwargs) diff --git a/numbsql/tests/test_aggregate.py b/numbsql/tests/test_aggregate.py index fa382e74..b4a39a18 100644 --- a/numbsql/tests/test_aggregate.py +++ b/numbsql/tests/test_aggregate.py @@ -1,16 +1,12 @@ from __future__ import annotations -import pathlib import sqlite3 -import sys from typing import List, Optional, Tuple import pytest from numba.experimental import jitclass from packaging.version import parse as parse_version from pytest_benchmark.fixture import BenchmarkFixture -from testbook import testbook -from testbook.client import TestbookNotebookClient from numbsql import create_aggregate, sqlite_udaf from numbsql.exceptions import UnsupportedAggregateTypeError @@ -366,15 +362,3 @@ def test_window_bench( large_con: sqlite3.Connection, benchmark: BenchmarkFixture, func: str ) -> None: assert benchmark(run_agg_partition_by, large_con, func) - - -@pytest.mark.skipif( # type: ignore[misc] - sys.platform == "win32", - reason="Installation of dependencies is problematic on windows", -) -@testbook( # type: ignore[misc] - pathlib.Path(__file__).parent.parent.parent / "notebooks" / "sqlite-window.ipynb", - execute=True, -) -def test_sqlite_window_notebook(tb: TestbookNotebookClient) -> None: - pass diff --git a/poetry-overrides.nix b/poetry-overrides.nix deleted file mode 100644 index b16a1abb..00000000 --- a/poetry-overrides.nix +++ /dev/null @@ -1,23 +0,0 @@ -self: super: -let - inherit (self) pkgs; - inherit (pkgs) lib stdenv; - disabledMacOSWheels = [ - "debugpy" - ]; -in -{ - llvmlite = super.llvmlite.override { preferWheel = false; }; - numba = (super.numba.override { preferWheel = false; }).overridePythonAttrs (_: { - NIX_CFLAGS_COMPILE = lib.optionalString - stdenv.isDarwin - "-I${lib.getDev pkgs.libcxx}/include/c++/v1"; - }); -} // super.lib.listToAttrs ( - map - (name: { - inherit name; - value = super.${name}.override { preferWheel = !self.pkgs.stdenv.isDarwin; }; - }) - disabledMacOSWheels -) diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 51b4182c..00000000 --- a/poetry.lock +++ /dev/null @@ -1,1397 +0,0 @@ -# This file is 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