From 0d2874d836da3415307eabb89556bde3bfc30a6a Mon Sep 17 00:00:00 2001
From: Martin <martin.preusse@gmail.com>
Date: Mon, 17 May 2021 15:56:49 +0200
Subject: [PATCH] biobase from DZD

---
 pipeline.yaml | 16 +++++++++++++++-
 1 file changed, 15 insertions(+), 1 deletion(-)

diff --git a/pipeline.yaml b/pipeline.yaml
index 4507317..9b642a6 100644
--- a/pipeline.yaml
+++ b/pipeline.yaml
@@ -6,7 +6,21 @@ CovidGraphPipeline:
     dependencies:
       - CREATE_FULL_TEXT_INDEXES
   - name: BIOBASE
-    image_repo: covidgraph/data_biobase
+    info_link: https://git.connect.dzd-ev.de/dzdconnectpipeline/dataloading_biobase
+    desc: Load different bio science repos into neo4j
+    image_repo: registry-gl.connect.dzd-ev.de:443/dzdconnectpipeline/dataloading_biobase
+    tag: prod
+    env_vars:
+      RUN_MODE: NotTest
+  - name: ONTOLOGIES
+    info_link: https://git.connect.dzd-ev.de/dzdconnectpipeline/dataloading_ontologies
+    desc: Load biomedical ontologies and mappings from biomedical entities to ontologies.
+    image_repo: registry-gl.connect.dzd-ev.de:443/dzdconnectpipeline/dataloading_ontologies
+    tag: prod
+    env_vars:
+      OBO_ONTOLOGIES: go,doid,mp,pato,hp
+    dependencies:
+      - BIOBASE
   - name: LENS_PATENT_DATA
     image_repo: covidgraph/data-lens-org-covid19-patents
   - name: CORD19