diff --git a/pipeline.yaml b/pipeline.yaml index 6d1981b..6b55ec2 100644 --- a/pipeline.yaml +++ b/pipeline.yaml @@ -6,7 +6,21 @@ CovidGraphPipeline: dependencies: - CREATE_FULL_TEXT_INDEXES - name: BIOBASE - image_repo: covidgraph/data_biobase + info_link: https://git.connect.dzd-ev.de/dzdconnectpipeline/dataloading_biobase + desc: Load different bio science repos into neo4j + image_repo: registry-gl.connect.dzd-ev.de:443/dzdconnectpipeline/dataloading_biobase + tag: prod + env_vars: + RUN_MODE: NotTest + - name: ONTOLOGIES + info_link: https://git.connect.dzd-ev.de/dzdconnectpipeline/dataloading_ontologies + desc: Load biomedical ontologies and mappings from biomedical entities to ontologies. + image_repo: registry-gl.connect.dzd-ev.de:443/dzdconnectpipeline/dataloading_ontologies + tag: prod + env_vars: + OBO_ONTOLOGIES: go,doid,mp,pato,hp + dependencies: + - BIOBASE - name: LENS_PATENT_DATA image_repo: covidgraph/data-lens-org-covid19-patents - name: CORD19