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Coon Group

Software developed and maintained by the Joshua Coon Research Group at the University of Wisconsin - Madison

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  1. IPSA IPSA Public

    The Interactive Peptide Spectral Annotator

    JavaScript 18 9

  2. Compass Compass Public

    Coon OMSSA (Open Mass Spectrometry Search Algorithm) Proteomic Analysis Software Suite.

    C# 12 8

  3. LipiDex LipiDex Public

    Lipid identification software for discovery LC-MS/MS

    Java 11 6

  4. Y3K-Software Y3K-Software Public

    Data analysis and GC/MS quantitation software used throughtout the Y3K project

    C# 4 1

  5. DeepProteomeSequencing-Software DeepProteomeSequencing-Software Public

    All code used for visualization in the manuscript "Global Detection of Human Variants and Isoforms by Deep Proteome Sequencing" is available here

    Python 4

  6. Argonaut Argonaut Public

    Repository for the Coon Lab Data Viewer

    JavaScript 3 3

Repositories

Showing 10 of 17 repositories
  • PhosphoAstral Public
    coongroup/PhosphoAstral’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Aug 15, 2024
  • LipiDex-2 Public

    LipiDex 2 - software for liquid chromatography-mass spectrometry (LC-MS) lipidomics

    coongroup/LipiDex-2’s past year of commit activity
    0 0 3 0 Updated Aug 9, 2024
  • Transcriptomics Public
    coongroup/Transcriptomics’s past year of commit activity
    C# 0 0 0 0 Updated Jun 21, 2023
  • Lipidex-RTLS-Support-Scripts Public

    This library contains the c# support scripts used to enable MSn-tree searching in LipiDex.

    coongroup/Lipidex-RTLS-Support-Scripts’s past year of commit activity
    C# 0 GPL-3.0 0 0 0 Updated Feb 14, 2023
  • DeepProteomeSequencing-Software Public

    All code used for visualization in the manuscript "Global Detection of Human Variants and Isoforms by Deep Proteome Sequencing" is available here

    coongroup/DeepProteomeSequencing-Software’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Feb 13, 2023
  • LipiDexSpectrumAnnotator Public

    C# script to annotate LipiDex spectral matches from PeakFinder and Spectrum Searcher modules

    coongroup/LipiDexSpectrumAnnotator’s past year of commit activity
    C# 0 MIT 0 0 0 Updated Sep 16, 2022
  • Argonaut Public

    Repository for the Coon Lab Data Viewer

    coongroup/Argonaut’s past year of commit activity
    JavaScript 3 MIT 3 2 0 Updated Apr 29, 2022
  • MITOMICS Public

    Code base for MITOMICS project

    coongroup/MITOMICS’s past year of commit activity
    R 2 MIT 0 0 0 Updated Jan 21, 2022
  • IPSA Public

    The Interactive Peptide Spectral Annotator

    coongroup/IPSA’s past year of commit activity
    JavaScript 18 MIT 9 4 0 Updated Jun 9, 2020
  • LipidGenie Public

    Source Code for the LipidGenie QTL Viewer

    coongroup/LipidGenie’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Nov 14, 2019
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