Documentation updated

doc/source/install.rst

@@ -22,15 +22,16 @@ which all the software has already been installed, configured and tested.
            docker pull compmetagen/micca
 
     #. Run an instance of the image, mounting the host working directory
-       (``/Users/davide/micca``) on to the container working directory
+       (e.g. ``/Users/davide/micca``) on to the container working directory
        ``/micca``:
 
        .. code-block:: sh
 
            docker run -t -i -v /Users/davide/micca:/micca -w /micca compmetagen/micca /bin/bash
 
        You need to write something like ``-v //c/Users/davide/micca:/micca`` if
-       you are in Windows.
+       you are in Windows or ``-v /home/davide/micca:/micca`` in Linux. The
+       ``--rm`` option automatically removes the container when it exits.
 
     #. Now you can use micca:
 

docker/README.md

@@ -6,11 +6,14 @@ classification and phylogenetic tree inference. The pipeline can be applied to a
 range of highly conserved genes/spacers, such as 16S rRNA gene, Internal
 Transcribed Spacer (ITS) and 28S rRNA. Homepage: http://www.micca.org.
 
-The RDP Classifier is included.
+The RDP classifier is preinstalled in the Docker image, so you can check the
+software version by typing ``echo $RDPPATH``
+(see https://hub.docker.com/r/compmetagen/rdpclassifier/).
 
 ## Available Tags/Versions
 
 - latest: GitHub snapshot (master)
+- 1.5.0: micca 1.5.0 (RDP Classifier release 2.11 included)
 - 1.4.0: micca 1.4.0 (RDP Classifier release 2.11 included)
 - 1.3.0: micca 1.3.0 (RDP Classifier release 2.11 included)
 - 1.2.2: micca 1.2.2 (RDP Classifier release 2.11 included)
@@ -22,9 +25,15 @@ The RDP Classifier is included.
 
    `docker pull compmetagen/micca`
 
-2. Run an instance of the image, mounting the host directory:
+2. Run an instance of the image, mounting the host working directory
+   (e.g. ``/Users/davide/micca``) on to the container working directory
+   ``/micca``:
 
-   `docker run -t -i -v /Users/davide/micca:/micca -w /micca compmetagen/micca /bin/bash`
+   `docker run --rm -t -i -v /Users/davide/micca:/micca -w /micca compmetagen/micca /bin/bash`
+
+   You need to write something like ``-v //c/Users/davide/micca:/micca`` if
+   you are in Windows or ``-v /home/davide/micca:/micca`` in Linux. The
+   ``--rm`` option automatically removes the container when it exits.
 
 3. Run micca without parameters: