From 02314b91f081ace6ae98e4085df927c059b625c0 Mon Sep 17 00:00:00 2001 From: Joselynn Wallace Date: Mon, 11 Mar 2024 13:26:22 -0400 Subject: [PATCH] Update Dockerfile --- metadata/Dockerfile | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/metadata/Dockerfile b/metadata/Dockerfile index a3c62c5..f5b0e90 100644 --- a/metadata/Dockerfile +++ b/metadata/Dockerfile @@ -1 +1,24 @@ FROM ghcr.io/compbiocore/bootcamp_scrna:mar_11_12-59-05_2024 +RUN R -e "install.packages(c('maps'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('pillar'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('gridExtra'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('metap'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('arrow'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('RcppArmadillo'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('deldir'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('Seurat'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('hdf5r'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('patchwork'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('tidyverse'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('ggrepel'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('sctransform'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('remotes'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('knitr'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('kableExtra'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('stringr'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('plotly'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('viridis'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('parallel'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('pdftools'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('openxlsx'),repos = 'http://cran.rstudio.com/',ask = FALSE)" +RUN R -e "install.packages(c('tesseract'),repos = 'http://cran.rstudio.com/',ask = FALSE)"