From 18e16eec92672937e525fae89080d33f5d2e7e78 Mon Sep 17 00:00:00 2001
From: colin-combe <colin.combe@ed.ac.uk>
Date: Mon, 24 Feb 2020 10:51:42 +0000
Subject: [PATCH] max modification count

---
 src/CLMS/model/SpectrumMatch.js | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/src/CLMS/model/SpectrumMatch.js b/src/CLMS/model/SpectrumMatch.js
index 33727bf..38cf6df 100644
--- a/src/CLMS/model/SpectrumMatch.js
+++ b/src/CLMS/model/SpectrumMatch.js
@@ -549,9 +549,12 @@ CLMS.model.SpectrumMatch.prototype.modificationCount = function() {
         return count;
     }
 
-    var modCount = peptideModCount(this.matchedPeptides[0]);
+    var modCount1 = peptideModCount(this.matchedPeptides[0]);
     if (this.matchedPeptides[1]) {
-        modCount += peptideModCount(this.matchedPeptides[1]);
+        var modCount2 = peptideModCount(this.matchedPeptides[1]);
+        if (modCount2 > modCount1) {
+          return modCount2;
+        }
     }
-    return modCount;
+    return modCount1;
 }