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Gene connectivity within each module #741

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sang-15 opened this issue Nov 25, 2024 · 0 comments
Open

Gene connectivity within each module #741

sang-15 opened this issue Nov 25, 2024 · 0 comments
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@sang-15
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sang-15 commented Nov 25, 2024

Hi,

Thank you for providing this great tool for trajectory analysis! I am just wondering if there is a way to know the connectivity of each gene after finding modules with find_gene_modules()? I wanted to know which genes are highly connected within each module.

Also, from the output data frame, are columns dim_1 and dim_2 represent the gene loading on the first 2 PCs? If so, does it make sense to find highly connected genes by ranking them based on the sum of abs(dim_1)+ abs(dim_2)?

@sang-15 sang-15 added the bug Something isn't working label Nov 25, 2024
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