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Thank you for providing this great tool for trajectory analysis! I am just wondering if there is a way to know the connectivity of each gene after finding modules with find_gene_modules()? I wanted to know which genes are highly connected within each module.
Also, from the output data frame, are columns dim_1 and dim_2 represent the gene loading on the first 2 PCs? If so, does it make sense to find highly connected genes by ranking them based on the sum of abs(dim_1)+ abs(dim_2)?
The text was updated successfully, but these errors were encountered:
Hi,
Thank you for providing this great tool for trajectory analysis! I am just wondering if there is a way to know the connectivity of each gene after finding modules with
find_gene_modules()
? I wanted to know which genes are highly connected within each module.Also, from the output data frame, are columns
dim_1
anddim_2
represent the gene loading on the first 2 PCs? If so, does it make sense to find highly connected genes by ranking them based on the sum of abs(dim_1)+ abs(dim_2)?The text was updated successfully, but these errors were encountered: