Files

 master

/

deeptools

/

Copy path

Directory actions

More options

Directory actions

More options

Latest commit

5 people

Develop (deeptools#1185)

Feb 3, 2023

3005380 · Feb 3, 2023

History

History

This branch is 252 commits behind deeptools/deepTools:master.

/

deeptools

/

Top

Folders and files

Name		Name	Last commit message	Last commit date
parent directory ..
test		test	Develop (deeptools#1185)	Feb 3, 2023
SES_scaleFactor.py		SES_scaleFactor.py	Develop (deeptools#1185)	Feb 3, 2023
__init__.py		__init__.py	Redo nose fixes with the renamed files. This is simpler than merging :)	Jan 18, 2016
_version.py		_version.py	updated version by .1	Mar 16, 2021
alignmentSieve.py		alignmentSieve.py	Release 3.3.1 (deeptools#872)	Sep 10, 2019
bamCompare.py		bamCompare.py	release 3.5.0 (deeptools#990)	Aug 21, 2020
bamCoverage.py		bamCoverage.py	Develop (deeptools#911)	Jan 23, 2020
bamHandler.py		bamHandler.py	Develop (deeptools#1185)	Feb 3, 2023
bamPEFragmentSize.py		bamPEFragmentSize.py	fixed plotly errors inspired by deeptools#1013.	Nov 16, 2020
bigwigAverage.py		bigwigAverage.py	Develop (deeptools#1185)	Feb 3, 2023
bigwigCompare.py		bigwigCompare.py	Release 3.3.1 (deeptools#872)	Sep 10, 2019
cm.py		cm.py	Develop (deeptools#911)	Jan 23, 2020
computeGCBias.py		computeGCBias.py	Develop (deeptools#1185)	Feb 3, 2023
computeMatrix.py		computeMatrix.py	Develop (deeptools#1185)	Feb 3, 2023
computeMatrixOperations.py		computeMatrixOperations.py	removed test prints	Jan 19, 2021
correctGCBias.py		correctGCBias.py	Develop (deeptools#1185)	Feb 3, 2023
correlation.py		correlation.py	Develop (deeptools#1185)	Feb 3, 2023
correlation_heatmap.py		correlation_heatmap.py	updated cmp usage to fit the recent mpl updates. (deeptools#1001)	Sep 18, 2020
countReadsPerBin.py		countReadsPerBin.py	Develop (deeptools#1185)	Feb 3, 2023
deepBlue.py		deepBlue.py	Develop (deeptools#1185)	Feb 3, 2023
deeptools_list_tools.py		deeptools_list_tools.py	Develop (deeptools#1185)	Feb 3, 2023
estimateReadFiltering.py		estimateReadFiltering.py	Release 3.3.1 (deeptools#872)	Sep 10, 2019
getFragmentAndReadSize.py		getFragmentAndReadSize.py	Merge branch 'hotfix/2.5.4' into develop	Nov 3, 2017
getRatio.py		getRatio.py	Implement784 (deeptools#805)	Feb 15, 2019
getScaleFactor.py		getScaleFactor.py	Develop (deeptools#827)	Apr 1, 2019
getScorePerBigWigBin.py		getScorePerBigWigBin.py	Develop (deeptools#1185)	Feb 3, 2023
heatmapper.py		heatmapper.py	Develop (deeptools#1185)	Feb 3, 2023
heatmapper_utilities.py		heatmapper_utilities.py	Develop (deeptools#911)	Jan 23, 2020
mapReduce.py		mapReduce.py	Get bamPEFragmentSize working with less memory. Try to decrease memor…	Jun 13, 2018
misc.py		misc.py	Fix openMP issues (deeptools#716)	Jun 8, 2018
multiBamSummary.py		multiBamSummary.py	Develop (deeptools#911)	Jan 23, 2020
multiBigwigSummary.py		multiBigwigSummary.py	Release 3.3.1 (deeptools#872)	Sep 10, 2019
parserCommon.py		parserCommon.py	release 3.5.0 (deeptools#990)	Aug 21, 2020
plotCorrelation.py		plotCorrelation.py	Develop (deeptools#911)	Jan 23, 2020
plotCoverage.py		plotCoverage.py	fixed plotly errors inspired by deeptools#1013.	Nov 16, 2020
plotEnrichment.py		plotEnrichment.py	fixed plotly errors inspired by deeptools#1013.	Nov 16, 2020
plotFingerprint.py		plotFingerprint.py	fixed plotly errors inspired by deeptools#1013.	Nov 16, 2020
plotHeatmap.py		plotHeatmap.py	fixed plotly errors inspired by deeptools#1013.	Nov 16, 2020
plotPCA.py		plotPCA.py	Develop (deeptools#911)	Jan 23, 2020
plotProfile.py		plotProfile.py	Develop (deeptools#1185)	Feb 3, 2023
sumCoveragePerBin.py		sumCoveragePerBin.py	Develop (deeptools#1185)	Feb 3, 2023
utilities.py		utilities.py	fixed plotly errors inspired by deeptools#1013.	Nov 16, 2020
writeBedGraph.py		writeBedGraph.py	Develop (deeptools#1185)	Feb 3, 2023
writeBedGraph_bam_and_bw.py		writeBedGraph_bam_and_bw.py	Develop (deeptools#1185)	Feb 3, 2023
View all files