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Add LocusName to snp_table #33

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moorembioinfo opened this issue May 22, 2022 · 1 comment
Closed

Add LocusName to snp_table #33

moorembioinfo opened this issue May 22, 2022 · 1 comment

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@moorembioinfo
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moorembioinfo commented May 22, 2022

Hi Chad,

Could an option be added whereby the LocusName is added to the snp_table.txt matrix? I'm attempting to analyse snps per fragment but the core_snps.txt can become massive!

The output I have in mind would look like this:

<style> </style>
    genome1 genome2 genome3 genome4
LocusName1 4567 A T C G
LocusName1 10384 A T C G
LocusName2 12475 A T - G
LocusName2 14569 - G C G

Thanks in advance for any help with this!

EDIT: I realise now that the positions are not included already. So it would be to add the LocusName's and positions. For my purposes the LocusName's alone would be sufficient

@moorembioinfo
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closing issue and submitting pull request #34

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