config.yaml

lakefs:
  s3_endpoint: ""
  access_key: ""
  secret_key: ""
  data_repository: "smsc-basel"
  branch: 'main/'
datasplit:
  split: [70, 10, 20]
  num_splits: 5
  foldspath: "/tmp/folds"
mdgru:
  featurefiles: ["flair.nii.gz", "t1.nii.gz", "t1ce.nii.gz", "t2.nii.gz"]
  maskfiles: ["seg.nii.gz"]
  datapath: "/tmp/mdgru"
  locationtraining: "training.json"
  locationvalidation: "validation.json"
  locationtesting: "test.json"
  optionname: "test_mdgru"
  modelname: "test_mdgru_docker"
  w: [240, 240]
  p: [0, 0]
  windowsizetesting: [240, 240]
  paddingtesting: [0, 0]
  iterations: 50000
  validate_each: 50001
  save_each: 5000
  nclasses: 5
  num_threads: 8
  gpu: 0
  cache_path: "/tmp/s3_cache"
  use_s3: true
run:
  container_name: "mdgru_s3"
  docker_rootless: true
  gpu_pool: [0]
  detach_docker: true
  cache_path: "/tmp/s3_cache"
  cache_delete: true