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With the release of the clickhouse integration, deployers of cBioPortal can now run cBioPortal in "clickhouse mode". Let's provide a way to do this using the cbioportal docker compose setup. It should be an opt-in functionality, mainly useful for when you have large studies >100K samples.
Add a way to launch cBioPortal with clickhouse. E.g.:
docker compose -f docker-compose.yml -f addon/docker-compose.clickhouse.yml up
Add a sync step, this step would copy the MySQL data to clickhouse using sling or another approach. Can reuse what's been developed for the production GENIE portal (should prolly run in a separate container with access to both MySQL db and clickhouse db). After loading a custom study, users will now have to run a sync step (or potentially it could be a single command that runs the regular import followed by the sync step).
With the release of the clickhouse integration, deployers of cBioPortal can now run cBioPortal in "clickhouse mode". Let's provide a way to do this using the cbioportal docker compose setup. It should be an opt-in functionality, mainly useful for when you have large studies >100K samples.
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