diff --git a/src/test/java/org/cbioportal/persistence/mybatisclickhouse/CNAGenesTest.java b/src/test/java/org/cbioportal/persistence/mybatisclickhouse/CNAGenesTest.java index 186b584225b..5cc5757a037 100644 --- a/src/test/java/org/cbioportal/persistence/mybatisclickhouse/CNAGenesTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatisclickhouse/CNAGenesTest.java @@ -79,7 +79,7 @@ public void getCnaGenesWithAlterationFilter() { onlyDriverFilter.setIncludeVUS(false); onlyDriverFilter.setIncludeUnknownOncogenicity(false); - var alterationCountByGenes1 = studyViewMapper.getCnaGenes(StudyViewFilterHelper.build(studyViewFilter, null, null), + var alterationCountByGenes1 = studyViewMapper.getCnaGenes(StudyViewFilterHelper.build(studyViewFilter, null, null, studyViewFilter.getStudyIds()), AlterationFilterHelper.build(onlyDriverFilter)); assertEquals(0, alterationCountByGenes1.size()); @@ -88,7 +88,7 @@ public void getCnaGenesWithAlterationFilter() { onlyVUSFilter.setIncludeVUS(true); onlyVUSFilter.setIncludeUnknownOncogenicity(false); - var alterationCountByGenes2 = studyViewMapper.getCnaGenes(StudyViewFilterHelper.build(studyViewFilter, null, null), + var alterationCountByGenes2 = studyViewMapper.getCnaGenes(StudyViewFilterHelper.build(studyViewFilter, null, null, studyViewFilter.getStudyIds()), AlterationFilterHelper.build(onlyVUSFilter)); assertEquals(0, alterationCountByGenes2.size()); @@ -97,7 +97,7 @@ public void getCnaGenesWithAlterationFilter() { onlyUnknownOncogenicityFilter.setIncludeVUS(false); onlyUnknownOncogenicityFilter.setIncludeUnknownOncogenicity(true); - var alterationCountByGenes3 = studyViewMapper.getCnaGenes(StudyViewFilterHelper.build(studyViewFilter, null, null), + var alterationCountByGenes3 = studyViewMapper.getCnaGenes(StudyViewFilterHelper.build(studyViewFilter, null, null, studyViewFilter.getStudyIds()), AlterationFilterHelper.build(onlyUnknownOncogenicityFilter)); assertEquals(3, alterationCountByGenes3.size()); diff --git a/src/test/java/org/cbioportal/persistence/mybatisclickhouse/MutatedGenesTest.java b/src/test/java/org/cbioportal/persistence/mybatisclickhouse/MutatedGenesTest.java index 0f4954d6d82..13484024b78 100644 --- a/src/test/java/org/cbioportal/persistence/mybatisclickhouse/MutatedGenesTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatisclickhouse/MutatedGenesTest.java @@ -92,7 +92,7 @@ public void getMutatedGenesWithAlterationFilter() { onlyDriverFilter.setIncludeVUS(false); onlyDriverFilter.setIncludeUnknownOncogenicity(false); - var alterationCountByGenes3 = studyViewMapper.getMutatedGenes(StudyViewFilterHelper.build(studyViewFilter, null, null), + var alterationCountByGenes3 = studyViewMapper.getMutatedGenes(StudyViewFilterHelper.build(studyViewFilter, null, null, studyViewFilter.getStudyIds()), AlterationFilterHelper.build(onlyDriverFilter)); assertEquals(2, alterationCountByGenes3.size()); @@ -114,7 +114,7 @@ public void getMutatedGenesWithAlterationFilter() { onlyVUSFilter.setIncludeVUS(true); onlyVUSFilter.setIncludeUnknownOncogenicity(false); - var alterationCountByGenes4 = studyViewMapper.getMutatedGenes(StudyViewFilterHelper.build(studyViewFilter, null, null), + var alterationCountByGenes4 = studyViewMapper.getMutatedGenes(StudyViewFilterHelper.build(studyViewFilter, null, null, studyViewFilter.getStudyIds()), AlterationFilterHelper.build(onlyVUSFilter)); assertEquals(3, alterationCountByGenes4.size()); @@ -136,7 +136,7 @@ public void getMutatedGenesWithAlterationFilter() { onlyUnknownOncogenicityFilter.setIncludeVUS(false); onlyUnknownOncogenicityFilter.setIncludeUnknownOncogenicity(true); - var alterationCountByGenes5 = studyViewMapper.getMutatedGenes(StudyViewFilterHelper.build(studyViewFilter, null, null), + var alterationCountByGenes5 = studyViewMapper.getMutatedGenes(StudyViewFilterHelper.build(studyViewFilter, null, null, studyViewFilter.getStudyIds()), AlterationFilterHelper.build(onlyUnknownOncogenicityFilter)); assertEquals(0, alterationCountByGenes5.size()); }