From c4ed905a9fe3bc499c598b0746722f4113d44ceb Mon Sep 17 00:00:00 2001 From: James Date: Tue, 19 Nov 2024 13:50:32 -0500 Subject: [PATCH] another minor alteration of python environment --- scripts/gatkcondaenv.yml.template | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/scripts/gatkcondaenv.yml.template b/scripts/gatkcondaenv.yml.template index 55fc3197805..14856c3afac 100644 --- a/scripts/gatkcondaenv.yml.template +++ b/scripts/gatkcondaenv.yml.template @@ -42,8 +42,6 @@ dependencies: - conda-forge::psutil>=5.9.2 - conda-forge::protobuf<3.20,>=3.9.2 # Protobuf constraint for TensorFlow compatibility - conda-forge::intervaltree~=3.1.0 -- conda-forge::cyvcf2~=0.30.15 -#- conda-forge::mmap-ninja>=0.2.4 # core R dependencies; these should only be used for plotting and do not take precedence over core python dependencies! - r-base=4.3.1 @@ -62,4 +60,6 @@ dependencies: # pip installs should be avoided, as pip may not respect the dependencies found by the conda solver - pip: + - cyvcf2~=0.30.15 + - mmap-ninja>=0.2.4 - gatkPythonPackageArchive.zip \ No newline at end of file