From 166866bed94fd4aace71f67ef1ac79830b7a6a58 Mon Sep 17 00:00:00 2001
From: Lucas van Dijk <info@lucasvandijk.nl>
Date: Wed, 3 Aug 2022 14:53:18 -0400
Subject: [PATCH] Force SciPy version <1.9

See https://github.com/biocore/scikit-bio/issues/1818
---
 environment.yml | 2 +-
 setup.py        | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/environment.yml b/environment.yml
index fcd796d..0089d71 100644
--- a/environment.yml
+++ b/environment.yml
@@ -9,7 +9,7 @@ dependencies:
     - "scikit-bio>=0.5"
     - "scikit-learn>=0.24"
     - numpy
-    - scipy
+    - "scipy<1.9"
     - h5py
     - matplotlib
     - pysam
diff --git a/setup.py b/setup.py
index beee85f..e86725b 100755
--- a/setup.py
+++ b/setup.py
@@ -147,7 +147,7 @@ def build_extensions(self):
     ],
     install_requires=[
         'numpy',
-        'scipy',
+        'scipy<1.9',
         'h5py',
         'intervaltree',
         'matplotlib',