From b87c29be8b43b8debddb96f052b989baa1a2c31d Mon Sep 17 00:00:00 2001 From: rnmitchell Date: Sat, 22 Jul 2023 09:57:48 -0400 Subject: [PATCH] fixed setup.py --- README.md | 2 +- setup.py | 3 ++- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index fbd64a47..ab49d907 100755 --- a/README.md +++ b/README.md @@ -209,7 +209,7 @@ types: ```all``` choices are "all", "i" (identity SNPs only), "p" (phenotype onl nofilter: ```False``` (True/False); if no filtering is desired at the format step; if False, will remove any allele designated as Not Typed (invoke using the ```--nofiltering```) ### convert settings -strand: ```forward``` (forward/uas); indicates which orientation to report the alleles for the SigPrep SNPs; uas indicates the orientation as reported by the UAS or the forward strand +strand: ```forward``` (forward/uas); indicates which orientation to report the alleles for the SigPrep SNPs; uas indicates the orientation as reported by the UAS or the forward strand references: ```None```; list IDs of the samples to be run as references in EFM; default is no reference samples separate: ```False``` (True/False); if want to separate samples into individual files for use in EFM thresh: ```0.03```; Analytical threshold value diff --git a/setup.py b/setup.py index ffec9cd3..9780bd8d 100755 --- a/setup.py +++ b/setup.py @@ -30,7 +30,8 @@ "lusSTR/tests/data/snps/*", "lusSTR/tests/data/RU_stutter_test/*", "lusSTR/tests/data/NGS_stutter_test/*", - "lusSTR/tests/data/kinsnps/*" "lusSTR/workflows/*", + "lusSTR/tests/data/kinsnps/*", + "lusSTR/workflows/*", "lusSTR/wrappers/*", ] },