From c5c2d2e7ac75af0b00647939e2dfaf73ab59614b Mon Sep 17 00:00:00 2001 From: johnne Date: Wed, 8 Dec 2021 14:11:56 +0100 Subject: [PATCH 1/2] Compare uppercase letters when filtering --- src/coidb/scripts/common.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/coidb/scripts/common.py b/src/coidb/scripts/common.py index 67a1577..705238d 100644 --- a/src/coidb/scripts/common.py +++ b/src/coidb/scripts/common.py @@ -91,7 +91,7 @@ def filter_non_standard(df): seq = seq.replace("-", "").strip("N") letters = set([x for x in seq]) for l in letters: - if l not in ["A", "C", "G", "T"]: + if l.upper() not in ["A", "C", "G", "T"]: drop_ids.append(record_id) break return df.drop(drop_ids), len(drop_ids) From d197a503bc5b5697f46aef2ddc02ddd9f69453de Mon Sep 17 00:00:00 2001 From: johnne Date: Wed, 8 Dec 2021 20:55:04 +0100 Subject: [PATCH 2/2] Version bump --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 150f0c1..fe622e9 100644 --- a/setup.py +++ b/setup.py @@ -5,7 +5,7 @@ setup( name="coidb", - version="0.3.0", + version="0.3.1", author="John Sundh", url="https://github.com/NBISweden/coidb/", description="Workflow for downloading and formatting COI database",