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## 2020-02-01: NCBI moved "old" refseq to genomes/archive/old_refseq/
## see ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/00__README_archiving_notice.txt
###############################################
# Genomes and alignments
genomes/all/GCF/000/001/405/*/*assembly_report.txt
genomes/all/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/README.txt
genomes/all/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/GCF*
genomes/all/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/RefSeq_transcripts_alignments/
genomes/all/GCF/009/914/755/GCF_009914755.1_T2T-CHM13v2.0/README.txt
genomes/all/GCF/009/914/755/GCF_009914755.1_T2T-CHM13v2.0/GCF*
genomes/all/GCF/009/914/755/GCF_009914755.1_T2T-CHM13v2.0/RefSeq_transcripts_alignments/
refseq/H_sapiens/README
refseq/H_sapiens/RefSeqGene/*.gz
refseq/H_sapiens/RefSeqGene/LRG_RefSeqGene
refseq/H_sapiens/RefSeqGene/gene_RefSeqGene
###############################################
# RefSeq
refseq/H_sapiens/mRNA_Prot
# Deprecated gff3 files in here:
refseq/H_sapiens/alignments/ARCHIVE/all/
###############################################
# Gene information
gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz
gene/DATA/gene2accession.gz
gene/DATA/gene2refseq.gz
gene/DATA/gene_info.gz
gene/GeneRIF/generifs_basic.gz
gene/GeneRIF/interactions.gz
gene/README
# pub/clinvar/xml/Clinvar
# pub/clinvar/xml/_README
# pub/clinvar/vcf_GRCh37/clinvar*
# pub/clinvar/vcf_GRCh38/clinvar*
## 2020-02-01: NCBI moved "old" refseq to genomes/archive/old_refseq/
## see ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/00__README_archiving_notice.txt
# genomes/H_sapiens/CHR_*/hs*.fa.gz
# genomes/H_sapiens/protein/protein.fa.gz
#snp/organisms/human_9606/VCF/All*.vcf*
#snp/organisms/human_9606/XML/*xml.gz
#snp/organisms/human_9606_b147_GRCh37p13/VCF/All*.vcf*
#snp/organisms/human_9606_b147_GRCh37p13/XML/*xml.gz
#snp/organisms/human_9606_b147_GRCh38p2/VCF/All*.vcf*
#snp/organisms/human_9606_b147_GRCh38p2/XML/*xml.gz