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Workflow names disappearing #122

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jdeck88 opened this issue Oct 1, 2020 · 3 comments
Open

Workflow names disappearing #122

jdeck88 opened this issue Oct 1, 2020 · 3 comments

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@jdeck88
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jdeck88 commented Oct 1, 2020

From Niamh:

  • Why do some contigs lose the Workflow Name? This seems to happen randomly to several contigs in a folder, and has happened to multiple users working in different projects.
  • Is there an easy way for us to retrieve the Workflow Name?
  • In the GenBank submission tool we select "Workflow Name" in the Sequence ID dropdown menu. If we don't have a Workflow Name can we use another field?

From Hilary Miller at biomatters:
... for the purposes of Genbank submission, you really don't need the Workflow name field. You can choose any unique identifier for the Sequence ID - on your documents fields like Name, Sample or Tissue ID could be used.

Note from John Deck: we have a work-around above for submitting using the Genbank tool (use another field besides workflow name).

Meanwhile, in order to diagnose this issue it would be great if there was a concrete way i can reproduce this... can someone provide more information for me so i know where to start?

@seitudora
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Hi John,

The contigs that lost workflow names are confined to PCR plates FY17_StreamCode_P01_18s_PCR01_02262018, FY17_StreamCode_P02_18s_PCR01_02132018, FY17_StreamCode_P11_18s_PCR01_02172018 and FY17_StreamCode_P12_18s_PCR01_02262018.

I tried to attach a Geneious file, but it is not supported in GitHub.

@jdeck88
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jdeck88 commented Oct 2, 2020

You can zip the geneious file to attach it, or email it to me and i can zip and attach it.

@seitudora
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Here it is. Thanks!

[
3 documents from contigs.geneious.zip
](url)

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