- Speedup alignment of
Chain Int Char
.
Complementary
instance forChar
.
ChainLike
instance forVector
*
->Type
for GHC-9.
- Tweak
package.yaml
to makestack-2.3.1
happy.
- Change Hackage upload command to
--pvp-bounds upper
instead ofboth
to fix plan construction for older GHCs. This is needed to fix haddocks building on Hackage.
- Resolver version up.
- Move from
less-wrong
tobiocad
.
- Affine alignment matrix construction and traceback.
similarity'
family of functions to calculate similarity directly onAlignnmentResult
.
- Generalize affine gap matrix construction;
- Improve alignment documentation.
- Typeclass
IsGap
. - Now you can align two sequences using different gaps for each one of them.
- Removed
affine
function fromSequenceAlignment
typeclass.