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environment.yml
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name: eff-ph
channels:
- pytorch
- nvidia
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=5.1
- anndata=0.9.1
- appdirs=1.4.4
- arpack=3.7.0
- asttokens=2.0.5
- backcall=0.2.0
- blas=1.0
- bottleneck=1.3.5
- brotli=1.0.9
- brotli-bin=1.0.9
- brotlipy=0.7.0
- bzip2=1.0.8
- ca-certificates=2023.05.30
- cffi=1.15.1
- charset-normalizer=2.0.4
- comm=0.1.2
- contourpy=1.0.5
- cycler=0.11.0
- cytoolz=0.12.0
- dbus=1.13.18
- decorator=5.1.1
- executing=0.8.3
- expat=2.4.9
- giflib=5.2.1
- glib=2.70.2
- h5py=3.7.0
- hdf5=1.10.6
- icu=68.2
- idna=3.4
- igraph=0.9.7
- intel-openmp=2021.4.0
- ipykernel=6.19.2
- ipython=8.12.2
- ipywidgets=8.1.2
- jedi=0.18.1
- joblib=1.2.0
- jpeg=9e
- jupyter_client=8.1.0
- jupyter_core=5.3.0
- kiwisolver=1.4.4
- krb5=1.19.4
- lcms2=2.12
- ld_impl_linux-64=2.38
- leidenalg=0.8.9
- llvmlite=0.39.1
- locket=1.0.0
- lz4-c=1.9.4
- matplotlib=3.7.0
- matplotlib-base=3.7.0
- matplotlib-inline=0.1.6
- mkl=2021.4.0
- mkl-service=2.4.0
- mkl_fft=1.3.1
- mkl_random=1.2.2
- mscorefonts=0.0.1
- munkres=1.1.4
- ncurses=6.4
- nest-asyncio=1.5.6
- networkx=2.8.4
- nss=3.74
- numba=0.56.4
- numexpr=2.8.4
- numpy=1.23.5
- numpy-base=1.23.5
- opentsne=0.6.2
- pandas=1.5.3
- parso=0.8.3
- partd=1.2.0
- pcre=8.45
- pexpect=4.8.0
- pickleshare=0.7.5
- pillow=9.0.1
- pip=23.2.1
- pooch=1.4.0
- prompt-toolkit=3.0.36
- psutil=5.9.0
- ptyprocess=0.7.0
- pure_eval=0.2.2
- pycparser=2.21
- pygobject=3.42.0
- pyparsing=3.0.9
- pyqt=5.12.3
- pyqt5-sip=4.19.18
- pysocks=1.7.1
- python=3.10.4
- python-dateutil=2.8.2
- python-igraph=0.9.9
- pytorch=1.13.1=py3.10_cuda11.6_cudnn8.3.2_0
- pytorch-cuda=11.6
- pytorch-mutex=1.0=cuda
- pytz=2022.7
- pywavelets=1.4.1
- pyyaml=6.0
- readline=8.2
- requests=2.31.0
- scanpy=1.9.3
- scikit-image=0.19.3
- scikit-learn=1.2.1
- scikit-misc=0.1.4
- scipy=1.10.0
- seaborn=0.12.2
- setuptools=68.0.0
- six=1.16.0
- stack_data=0.2.0
- threadpoolctl=2.2.0
- tifffile=2020.6.3
- tk=8.6.12
- toolz=0.12.0
- torchvision=0.14.1
- traitlets=5.7.1
- urllib3=1.26.16
- wcwidth=0.2.5
- wheel=0.38.4
- xz=5.2.10
- yaml=0.2.5
- zeromq=4.3.4
- zlib=1.2.11
- zstd=1.5.2
- umap-learn=0.5.4
- pip:
- annoy==1.17.3
- cython==0.29.33
- glasbey==0.2.0
- pybind11==2.10.3
- pykeops==2.1.1
- pynndescent==0.5.10
- scanorama==1.7.3
- scikit-tda==1.0.0
- sortedcontainers==2.4.0
- tadasets==0.0.4
- tqdm==4.65.0