diff --git a/dist/common/splash/UV-CDAT_logo.tiff b/dist/common/splash/UV-CDAT_logo.tiff old mode 100755 new mode 100644 diff --git a/dist/common/splash/UVCDAT_Logo_sites.pdf b/dist/common/splash/UVCDAT_Logo_sites.pdf old mode 100755 new mode 100644 diff --git a/doc/vistrails.xsd b/doc/vistrails.xsd old mode 100755 new mode 100644 diff --git a/packages/SciPy/MatlabReader.py b/packages/SciPy/MatlabReader.py old mode 100755 new mode 100644 diff --git a/packages/SciPy/Matrix.py b/packages/SciPy/Matrix.py old mode 100755 new mode 100644 diff --git a/packages/SciPy/MatrixConvert.py b/packages/SciPy/MatrixConvert.py old mode 100755 new mode 100644 diff --git a/packages/SciPy/MatrixInfo.py b/packages/SciPy/MatrixInfo.py old mode 100755 new mode 100644 diff --git a/packages/SciPy/MatrixOperations.py b/packages/SciPy/MatrixOperations.py old mode 100755 new mode 100644 diff --git a/packages/SciPy/SciPy.py b/packages/SciPy/SciPy.py old mode 100755 new mode 100644 diff --git a/packages/SciPy/__init__.py b/packages/SciPy/__init__.py old mode 100755 new mode 100644 diff --git a/packages/pc3/info/ipaw/pc3/LoadAppLogic.py b/packages/pc3/info/ipaw/pc3/LoadAppLogic.py old mode 100755 new mode 100644 diff --git a/packages/pc3/info/ipaw/pc3/LoadConstants.py b/packages/pc3/info/ipaw/pc3/LoadConstants.py old mode 100755 new mode 100644 diff --git a/packages/pc3/info/ipaw/pc3/LoadSql.py b/packages/pc3/info/ipaw/pc3/LoadSql.py old mode 100755 new mode 100644 diff --git a/packages/pc3/info/ipaw/pc3/LoadWorkflow.py b/packages/pc3/info/ipaw/pc3/LoadWorkflow.py old mode 100755 new mode 100644 diff --git a/packages/stem/code/stem.library.A.R b/packages/stem/code/stem.library.A.R old mode 100755 new mode 100644 diff --git a/packages/stem/code/stem.library.B.R b/packages/stem/code/stem.library.B.R old mode 100755 new mode 100644 diff --git a/scripts/module_appearance/main.py b/scripts/module_appearance/main.py index e977ee8e..7b663b2b 100755 --- a/scripts/module_appearance/main.py +++ b/scripts/module_appearance/main.py @@ -1,37 +1,3 @@ -############################################################################### -## -## Copyright (C) 2006-2011, University of Utah. -## All rights reserved. -## Contact: contact@vistrails.org -## -## This file is part of VisTrails. -## -## "Redistribution and use in source and binary forms, with or without -## modification, are permitted provided that the following conditions are met: -## -## - Redistributions of source code must retain the above copyright notice, -## this list of conditions and the following disclaimer. -## - Redistributions in binary form must reproduce the above copyright -## notice, this list of conditions and the following disclaimer in the -## documentation and/or other materials provided with the distribution. -## - Neither the name of the University of Utah nor the names of its -## contributors may be used to endorse or promote products derived from -## this software without specific prior written permission. -## -## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" -## AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, -## THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR -## PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR -## CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, -## EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, -## PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; -## OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, -## WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR -## OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF -## ADVISED OF THE POSSIBILITY OF SUCH DAMAGE." -## -############################################################################### - #!/usr/bin/env python ############################################################################### ## @@ -66,6 +32,7 @@ ## ADVISED OF THE POSSIBILITY OF SUCH DAMAGE." ## ############################################################################### + ############################################################################## # create_module_appearance.py helps VisTrails package developers customize # the appearance of modules in their packages. diff --git a/vistrails/core/modules/package.py b/vistrails/core/modules/package.py old mode 100755 new mode 100644 diff --git a/vistrails/core/resources/default_vistrails_startup b/vistrails/core/resources/default_vistrails_startup old mode 100755 new mode 100644 diff --git a/vistrails/core/startup.py b/vistrails/core/startup.py old mode 100755 new mode 100644 diff --git a/vistrails/gui/application_server.py b/vistrails/gui/application_server.py old mode 100755 new mode 100644 diff --git a/vistrails/gui/bundles/linux_fedora_install.py b/vistrails/gui/bundles/linux_fedora_install.py old mode 100755 new mode 100644 diff --git a/vistrails/gui/bundles/linux_ubuntu_install.py b/vistrails/gui/bundles/linux_ubuntu_install.py old mode 100755 new mode 100644 diff --git a/vistrails/gui/module_annotation.py b/vistrails/gui/module_annotation.py old mode 100755 new mode 100644 diff --git a/vistrails/gui/modules/module_configure.py b/vistrails/gui/modules/module_configure.py old mode 100755 new mode 100644 diff --git a/vistrails/gui/modules/port_configure.py b/vistrails/gui/modules/port_configure.py old mode 100755 new mode 100644 diff --git a/vistrails/gui/modules/resources/colorconfig_rc.py b/vistrails/gui/modules/resources/colorconfig_rc.py old mode 100755 new mode 100644 diff --git a/vistrails/gui/pipeline_view.py b/vistrails/gui/pipeline_view.py old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/camera.png b/vistrails/gui/resources/images/camera.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/camera_mount.png b/vistrails/gui/resources/images/camera_mount.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/copy.png b/vistrails/gui/resources/images/copy.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/down.png b/vistrails/gui/resources/images/down.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/dragging.png b/vistrails/gui/resources/images/dragging.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/edit_add.png b/vistrails/gui/resources/images/edit_add.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/editcopy.png b/vistrails/gui/resources/images/editcopy.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/editdelete.png b/vistrails/gui/resources/images/editdelete.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/export.png b/vistrails/gui/resources/images/export.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/import.png b/vistrails/gui/resources/images/import.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/make_kdevelop.png b/vistrails/gui/resources/images/make_kdevelop.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/noatunloopsong.png b/vistrails/gui/resources/images/noatunloopsong.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/pipeline_bg.png b/vistrails/gui/resources/images/pipeline_bg.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/player_eject.png b/vistrails/gui/resources/images/player_eject.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/player_pause.png b/vistrails/gui/resources/images/player_pause.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/player_play.png b/vistrails/gui/resources/images/player_play.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/undo.png b/vistrails/gui/resources/images/undo.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/up.png b/vistrails/gui/resources/images/up.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/version_bg.png b/vistrails/gui/resources/images/version_bg.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/view_fullscreen.png b/vistrails/gui/resources/images/view_fullscreen.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/vistrails_icon.png b/vistrails/gui/resources/images/vistrails_icon.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/resources/images/vistrails_icon_small.png b/vistrails/gui/resources/images/vistrails_icon_small.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/uvcdat/resources/icons/info.png b/vistrails/gui/uvcdat/resources/icons/info.png old mode 100755 new mode 100644 diff --git a/vistrails/gui/uvcdat/resources/icons/source.png b/vistrails/gui/uvcdat/resources/icons/source.png old mode 100755 new mode 100644 diff --git a/vistrails/index/indexworkflow.py b/vistrails/index/indexworkflow.py index 10f43bc4..86be7c0b 100755 --- a/vistrails/index/indexworkflow.py +++ b/vistrails/index/indexworkflow.py @@ -1,37 +1,3 @@ -############################################################################### -## -## Copyright (C) 2006-2011, University of Utah. -## All rights reserved. -## Contact: contact@vistrails.org -## -## This file is part of VisTrails. -## -## "Redistribution and use in source and binary forms, with or without -## modification, are permitted provided that the following conditions are met: -## -## - Redistributions of source code must retain the above copyright notice, -## this list of conditions and the following disclaimer. -## - Redistributions in binary form must reproduce the above copyright -## notice, this list of conditions and the following disclaimer in the -## documentation and/or other materials provided with the distribution. -## - Neither the name of the University of Utah nor the names of its -## contributors may be used to endorse or promote products derived from -## this software without specific prior written permission. -## -## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" -## AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, -## THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR -## PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR -## CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, -## EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, -## PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; -## OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, -## WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR -## OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF -## ADVISED OF THE POSSIBILITY OF SUCH DAMAGE." -## -############################################################################### - #!/usr/bin/python ############################################################################### ## diff --git a/vistrails/packages/cdat/scripts/gen_init.py b/vistrails/packages/cdat/scripts/gen_init.py index 87c86e69..acda42dc 100755 --- a/vistrails/packages/cdat/scripts/gen_init.py +++ b/vistrails/packages/cdat/scripts/gen_init.py @@ -1,3 +1,4 @@ +#!/usr/bin/env python ############################################################################### ## ## Copyright (C) 2006-2011, University of Utah. diff --git a/vistrails/packages/cdat/scripts/init_inc.py b/vistrails/packages/cdat/scripts/init_inc.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/cdat/scripts/tests/cdat_gui.py b/vistrails/packages/cdat/scripts/tests/cdat_gui.py index 9ecd5c70..48459112 100755 --- a/vistrails/packages/cdat/scripts/tests/cdat_gui.py +++ b/vistrails/packages/cdat/scripts/tests/cdat_gui.py @@ -1,3 +1,4 @@ +#!/usr/bin/env python ############################################################################### ## ## Copyright (C) 2006-2011, University of Utah. @@ -32,7 +33,6 @@ ## ############################################################################### -#!/usr/bin/env python from PyQt4 import QtCore, QtGui import cdms2, vcs from cdatguiwrap import VCSQtManager diff --git a/vistrails/packages/cdat/scripts/xml/cdms2.xml b/vistrails/packages/cdat/scripts/xml/cdms2.xml old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/basic_widgets.py b/vistrails/packages/spreadsheet/basic_widgets.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/init.py b/vistrails/packages/spreadsheet/init.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/spreadsheet_base.py b/vistrails/packages/spreadsheet/spreadsheet_base.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/spreadsheet_controller.py b/vistrails/packages/spreadsheet/spreadsheet_controller.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/spreadsheet_event.py b/vistrails/packages/spreadsheet/spreadsheet_event.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/spreadsheet_helpers.py b/vistrails/packages/spreadsheet/spreadsheet_helpers.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/spreadsheet_rc.py b/vistrails/packages/spreadsheet/spreadsheet_rc.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/spreadsheet_registry.py b/vistrails/packages/spreadsheet/spreadsheet_registry.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/spreadsheet_sheet.py b/vistrails/packages/spreadsheet/spreadsheet_sheet.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/spreadsheet_tab.py b/vistrails/packages/spreadsheet/spreadsheet_tab.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/spreadsheet_tabcontroller.py b/vistrails/packages/spreadsheet/spreadsheet_tabcontroller.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/spreadsheet_window.py b/vistrails/packages/spreadsheet/spreadsheet_window.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/widgets/__init__.py b/vistrails/packages/spreadsheet/widgets/__init__.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/widgets/imageviewer/__init__.py b/vistrails/packages/spreadsheet/widgets/imageviewer/__init__.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/widgets/imageviewer/imageviewer.py b/vistrails/packages/spreadsheet/widgets/imageviewer/imageviewer.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/widgets/imageviewer/imageviewer_rc.py b/vistrails/packages/spreadsheet/widgets/imageviewer/imageviewer_rc.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/widgets/richtext/__init__.py b/vistrails/packages/spreadsheet/widgets/richtext/__init__.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/widgets/richtext/richtext.py b/vistrails/packages/spreadsheet/widgets/richtext/richtext.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/widgets/svg/__init__.py b/vistrails/packages/spreadsheet/widgets/svg/__init__.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/widgets/svg/svg.py b/vistrails/packages/spreadsheet/widgets/svg/svg.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/spreadsheet/widgets/webview/__init__.py b/vistrails/packages/spreadsheet/widgets/webview/__init__.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/vtDV3D/HyperwallManager.py b/vistrails/packages/vtDV3D/HyperwallManager.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/vtDV3D/Main.py b/vistrails/packages/vtDV3D/Main.py old mode 100755 new mode 100644 diff --git a/vistrails/packages/vtDV3D/hyperwall/iVisServer/main.py b/vistrails/packages/vtDV3D/hyperwall/iVisServer/main.py index fedda5cb..55b1189e 100755 --- a/vistrails/packages/vtDV3D/hyperwall/iVisServer/main.py +++ b/vistrails/packages/vtDV3D/hyperwall/iVisServer/main.py @@ -1,4 +1,4 @@ -#!/usr/bin/python2.5 +#!/usr/bin/env python import os, sys, argparse versionString = "v 0.0.1" diff --git a/vistrails/packages/vtk/base_module.py b/vistrails/packages/vtk/base_module.py old mode 100755 new mode 100644 diff --git a/vistrails/tests/resources/vtk.xml b/vistrails/tests/resources/vtk.xml old mode 100755 new mode 100644