test_all

#!/bin/bash

# init.mod modifications with runlmp module

# Non-existent init template file check 
#mv init0.mod init0temp.mod
#rm -rf init0.mod
#NiElastic.py

# Various input parameter formats
#test.py
# print lines in init.mod that differ from init0.mod
# *** regardless ordering 
# -f init0.mod - for each line; treat the line as a plain string
# -x - match the whole line
# -v - print only lines that don't match
#grep -F -x -v -f init00.mod init.mod 

# Loop through all directories in RES_...
# and verify if init.mod files are correct
#for dir in /nfs/matsci-fserv/share/truszkoa/NiElastic/RES_2015-04-10/*/
#do
#    dir=${dir%*/}
#    echo ${dir##*/} 
#    # loop through each subdirectory
#    # and check the init.mod files
#    for subdir in $dir/*/
#    do
#        subdir=${subdir%*/}
#        echo ${subdir##*/}
#        cd $subdir
#        grep -Fxvf init00.mod init.mod
#        # pause to inspect the results
#        read -rsp $'\n Press any key to continue...\n' -n 1 key 
#    done
#done

# Command:
# read -rsp $'\n Press any key to continue...\n' -n 1 key 
# -r - raw mode, no combined characters like "\" or "^"
# -s - silent mode, no need for keyboard output -- ?
# -p - specifies the prompt $'prompt'
# -n 1 - only needs a single character
# key - in case one needs to know the inpyut, in n 1 that is
#   the key that has been pressed  

# Directory generation
# Remove the old one
#rm -rf RES_2015-04-11
## run 
#NiElastic.py
## Print content
#tree RES_2015-04-11/

# Second and current usage of this block - check if and which jobs were
# not completed on the cluster. 
# Jobs that didn't complete will print with respective x/y/yz folder names
# NiElastic.py has a couple extra lines to accomodate those
# Not completed jobs are tracked by the absence of log.lammps file
FILE=log.lammps
# Loop through all directories and subdirectories and verify if the 
# log.lammps output (data_out.txt) and log infor (log.out) are correct
for dir in /nfs/matsci-fserv/share/truszkoa/NiAll/RES_2015-05-08/*/
do
    dir=${dir%*/}
    echo ${dir##*/} 
    # loop through each subdirectory
    # and check the init.mod files
    cd $dir
    # If log.lammps not present print subdirectory name
    if [ ! -f "$FILE" ];
    then
        echo No log ${dir##*/}
            #tail data_out.txt
            #echo " "
            #tail log.out 
            # pause to inspect the results
            #read -rsp $'\n Press any key to continue...\n' -n 1 key
   fi 
done