From aa33d862a0b6a68fc65c28a4ee006ed4a2515247 Mon Sep 17 00:00:00 2001
From: Rachel Colquhoun <rachel.colquhoun@ed.ac.uk>
Date: Wed, 21 Aug 2024 10:20:22 +0100
Subject: [PATCH] mods to Dockerfile

---
 Dockerfile      | 5 ++++-
 environment.yml | 2 +-
 2 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 272a109a..10a2d3dd 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -15,6 +15,9 @@ RUN sed -i 's/name: artic/name: base/' /tmp/env.yml
 RUN micromamba install --yes --file /tmp/env.yml && \
     micromamba clean --all --yes
 
+RUN pip uninstall -y tensorflow keras pyabpoa \
+  && conda install -y -c conda-forge tensorflow~=2.11 keras~=2.11
+
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 
 USER root
@@ -25,4 +28,4 @@ USER $MAMBA_USER
 
 ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]
 
-CMD ["/bin/bash"]
\ No newline at end of file
+CMD ["/bin/bash"]
diff --git a/environment.yml b/environment.yml
index 3f0c52d1..5b247716 100644
--- a/environment.yml
+++ b/environment.yml
@@ -25,4 +25,4 @@ dependencies:
   - samtools
   - tqdm
   - pip:
-    - medaka
\ No newline at end of file
+    - medaka~=1.12.0