README.md

bioinformatics

syllabus

1. Introduction

   • Pattern Count Problem
   • Frequent Words Problem
   • Reverse Complement Problem

2. Peptide Sequencing

   • Protein Translation Problem
   • Peptide Encoding Problem
   • Subpeptides Count Problem
   • Generating Theoretical Spectrum Problem
   • Counting Peptides with Given Mass Problem

3. Brute Force versus Branch and Bound

   • Cyclopeptide Sequencing Problem
   • Cyclopeptide Scoring Problem
   • Leaderboard Cyclopeptide Sequencing Problem

4. Motif Finding

   • Motif Enumeration Problem
   • Median String Problem

5. Motif Finding. Greedy

   • Profile-most Probable k-mer Problem
   • Greedy Motif Search
   • Greedy Motif Search with pseudocounts