sequencingRead.json

{
  "analysisType": "sequencingRead",
  "experiment": {
    "libraryStrategy": "WXS",
    "pairedEnd": false,
    "insertSize": 900,
    "aligned": true,
    "alignmentTool": "MUSE variant call pipeline",
    "referenceGenome": "hs37d5",
    "notes": "N/A"
  },
  "sample": [
    {
      "sampleSubmitterId": "internal_sample_98024759826836",
      "sampleType": "Total RNA",
      "specimen": {
        "specimenSubmitterId": "internal_specimen_9b73gk8s02dk",
        "specimenClass": "Normal",
        "specimenType": "Normal - solid tissue"
      },
      "donor": {
        "donorSubmitterId": "internal_donor_123456789-00",
        "donorGender": "female"
      }
    }
  ],
  "file": [
    {
      "fileType": "VCF",
      "fileName": "a3bc0998a-3521-43fd-fa10-a834f3874e46.MUSE_1-0rc-vcf.20170711.somatic.snv_mnv.vcf.gz",
      "fileSize": 376953,
      "fileAccess" : "controlled",
      "fileMd5sum": "61a91c4bf04ac2bd3795254104f75ad3"
    },
    {
      "fileType": "IDX",
      "fileName": "a3bc0998a-3521-43fd-fa10-a834f3874e46.MUSE_1-0rc-vcf.20170711.somatic.snv_mnv.vcf.gz.idx",
      "fileSize": 4840,
      "fileAccess" : "controlled",
      "fileMd5sum": "29594b19b079ad5731577e0495ddba63"
    }
  ]
}