PyPop 1.2.0rc1

PyPop 1.2.0 release candidate 1

• Fixes to [ParseAlleleCountFile] and makeNewPopFile in [Filters]

To install:

pip install --pre pypop-genomics

PyPop 1.2.0b3

PyPop 1.2.0 beta 3

• Restores [Sequence] filter functionality

To install:

pip install --pre pypop-genomics

PyPop 1.2.0b2

PyPop 1.2.0 beta 2

• Restores support for Python 3.6 wheels!

To install:

pip install --pre pypop-genomics

PyPop 1.2.0b1

PyPop 1.2.0 beta 1

• This is a beta version only available via TestPyPI.
• Moving most configuration logic and metadata to pyproject.toml
• Drops support for Python 3.6 wheels (setuptools for that version doesn't support most metadata fields in pyproject.toml)

To install:

pip install --pre --extra-index-url https://test.pypi.org/simple/ pypop-genomics

PyPop 1.1.3rc1- pre-release

Release candidate 1 for PyPop 1.1.3

• Includes test release of Windows ARM64-compatible wheel, available only on Test PyPI.

• To test these wheels on a Windows ARM64 platform:

pip install --pre --extra-index-url https://test.pypi.org/simple/ pypop-genomics

• For all other platforms:

pip install --pre pypop-genomics

PyPop 1.1.2

Install via PyPI

pip install -U pypop-genomics

1.1.2 - 2024-11-18

Features

• Add new command-line option --citation for installed version by @alexlancaster (#228)
• enable PyPy 3.10 as numpy wheels now exist by @alexlancaster (#219)

Internal

• Update numpy requirement from <=2.1.2 to <=2.1.3 by @dependabot (#226)
• update x86 runner to macos-13, pin swig version by @alexlancaster (#227)
• Bump pypa/cibuildwheel from 2.21.2 to 2.21.3 in the actions group by @dependabot (#225)
• Bump pypa/cibuildwheel from 2.21.1 to 2.21.2 in the actions group by @dependabot (#224)
• Update numpy requirement from <=2.1.1 to <=2.1.2 by @dependabot (#223)
• Bump pypa/cibuildwheel from 2.20.0 to 2.21.1 in the actions group across 1 directory by @dependabot (#222)

Documentation

• Add new command-line option --citation for installed version by @alexlancaster (#228)
• Update to latest sphinx and add subtitle by @alexlancaster (#220)

A full history of changes is available in NEWS.md.

Full Changelog: v1.1.1...v1.1.2

PyPop 1.1.1

This release adds support for Python 3.13.

Install via PyPI

pip install -U pypop-genomics

1.1.1 - 2024-09-10

Features

• Enable support for Python 3.13 by @alexlancaster (#217)

Bug Fixes

• Pin gsl bottles to 2.7.1 on macOS to preserve 10.15/Catalina on x86 and 11.0/Big Sur compatibility + update cibuildwheels by @alexlancaster (#212)

Internal

• Update numpy requirement from <=2.1.0 to <=2.1.1 by @dependabot (#218)
• Update numpy requirement from <=2.0.1 to <=2.1.0 by @dependabot (#216)
• Update lxml requirement from <=5.2.2 to <=5.3.0 by @dependabot (#215)
• Bump pypa/cibuildwheel from 2.19.2 to 2.20.0 in the actions group by @dependabot (#214)
• Update numpy requirement from <=2.0.0 to <=2.0.1 by @dependabot (#213)
• Update numpy requirement from <=1.26.4 to <=2.0.0 by @dependabot (#209)
• Bump pypa/cibuildwheel from 2.19.0 to 2.19.1 in the actions group by @dependabot (#210)
• Bump pypa/cibuildwheel from 2.18.1 to 2.19.0 in the actions group by @dependabot (#208)

A full history of changes is available in NEWS.md.

Full Changelog: v1.1.0...v1.1.1

PyPop 1.1.0

Install via PyPI

pip install -U pypop-genomics

1.1.0 - 2024-05-30

This release increases the minimum macOS requirements to Catalina (Intel) and Big Sur (Silicon) to ensure binary compatibility with the GNU Scientific Library (gsl) on those platforms. Thanks to @sjmack for testing.

Internal

• Bump cibuildwheel from 2.17.0 to 2.18.1, increase minimum macOS requirements by @dependabot (#206)
• Update lxml requirement from <=5.2.1 to <=5.2.2 by @dependabot (#205)
• Bump peaceiris/actions-gh-pages from 3 to 4 in the actions group by @dependabot (#201)
• Update lxml requirement from <=5.2.0 to <=5.2.1 by @dependabot (#202)
• Update lxml requirement from <=5.1.0 to <=5.2.0 by @dependabot (#200)
• Enable native MacOS Apple Silicon runners by @alexlancaster (#199)
• Update cibuildwheel GitHub action to 2.17.0 by @dependabot (#198)
• Update softprops/action-gh-release github action that uploads builds to releases by @dependabot (#197)

Documentation

• fix reversed links (#203) by @alexlancaster (#204)

A full history of changes is available in NEWS.md.

Full Changelog: v1.0.2...v1.1.0

PyPop 1.1.0rc2

Pre-release: second release candidate for 1.1.0

pip install pypop-genomics==1.1.0rc2

PyPop 1.1.0rc1

Test prerelease for 1.1.0.

pip install -i https://test.pypi.org/simple/ pypop-genomics==1.1.0rc1