diff --git a/{{cookiecutter.project_name}}/.github/workflows/ci.yaml b/{{cookiecutter.project_name}}/.github/workflows/ci.yaml
index 1d52ebd..1f638f0 100644
--- a/{{cookiecutter.project_name}}/.github/workflows/ci.yaml
+++ b/{{cookiecutter.project_name}}/.github/workflows/ci.yaml
@@ -11,12 +11,13 @@ on:
       - main
 
 jobs:
-  lint:
+  code-check:
     if: github.event.pull_request.draft == false
     runs-on: {{'ubuntu-latest' if cookiecutter.open_source == 'y' else '[self-hosted, self-hosted-ubuntu-latest]'}}
     steps:
       - uses: actions/checkout@v4
-      - uses: jpetrucciani/ruff-check@main
+      - uses: actions/setup-python@v5
+      - uses: pre-commit/action@v3.0.1
 
   pytest:
     if: github.event.pull_request.draft == false
diff --git a/{{cookiecutter.project_name}}/.pre-commit-config.yaml b/{{cookiecutter.project_name}}/.pre-commit-config.yaml
index 13ef8b6..9c83284 100644
--- a/{{cookiecutter.project_name}}/.pre-commit-config.yaml
+++ b/{{cookiecutter.project_name}}/.pre-commit-config.yaml
@@ -4,25 +4,38 @@ repos:
     hooks:
       - id: python-use-type-annotations
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v4.6.0
     hooks:
       - id: end-of-file-fixer
       - id: trailing-whitespace
       - id: debug-statements
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.3.2
+    rev: v0.5.2
     hooks:
       - id: ruff
-        args: [--fix, --exit-non-zero-on-fix]
-        types_or: [python, pyi, jupyter]
+        args:
+          - --fix
+          - --exit-non-zero-on-fix
+        types_or:
+          - python
+          - pyi
+          - jupyter
       - id: ruff-format
-        types_or: [python, pyi, jupyter]
+        types_or:
+          - python
+          - pyi
+          - jupyter
 -   repo: https://github.com/kynan/nbstripout
     rev: 0.7.1
     hooks:
     -   id: nbstripout
 -   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.9.0
+    rev: v1.10.1
     hooks:
     -   id: mypy
-        args: [--install-types, --non-interactive, --ignore-missing-imports, --show-error-codes]
+        args:
+          - --install-types
+          - --non-interactive
+          - --ignore-missing-imports
+          - --show-error-codes
+          - --check-untyped-defs
diff --git a/{{cookiecutter.project_name}}/makefile b/{{cookiecutter.project_name}}/makefile
index c19a5ce..fe5d9a4 100644
--- a/{{cookiecutter.project_name}}/makefile
+++ b/{{cookiecutter.project_name}}/makefile
@@ -26,14 +26,12 @@ help:
 
 install: ## Install dependencies
 	@echo "Installing the '{{ cookiecutter.project_name }}' project..."
-	@$(MAKE) --quiet install-brew
-	@$(MAKE) --quiet install-gpg
-	@$(MAKE) --quiet generate-gpg-key{{'\n	@$(MAKE) --quiet install-pipx\n	@$(MAKE) --quiet install-poetry' if cookiecutter.dependency_manager != 'pip'}}
+	@$(MAKE) --quiet install-brew{{'\n\t@$(MAKE) --quiet install-gpg' if cookiecutter.open_source != 'y'}}
+	@$(MAKE) --quiet generate-gpg-key{{'\n\t@$(MAKE) --quiet install-pipx\n\t@$(MAKE) --quiet install-poetry' if cookiecutter.dependency_manager != 'pip'}}
 	@$(MAKE) --quiet install-dependencies
-	@$(MAKE) --quiet setup-environment-variables
-	@$(MAKE) --quiet setup-git{{'\n\t@$(MAKE) --quiet freeze' if cookiecutter.dependency_manager == 'pip'}}
+	@$(MAKE) --quiet setup-environment-variables{{'\n\t@$(MAKE) --quiet setup-git' if cookiecutter.open_source != 'y'}}{{'\n\t@$(MAKE) --quiet freeze' if cookiecutter.dependency_manager == 'pip'}}
 	@$(MAKE) --quiet add-repo-to-git
-	@echo "Installed the '{{ cookiecutter.project_name }}' project. You can now activate your virtual environment with 'source .venv/bin/activate'."
+	@echo "Installed the '{{ cookiecutter.project_name }}' project. You can now activate your virtual environment with 'source .venv/bin/activate'. If you want to use pre-commit hooks, run 'make install-pre-commit'."
 	@echo "Note that this is a {{'Poetry' if cookiecutter.dependency_manager != 'pip' else 'pip'}} project. Use '{{'poetry add <package>' if cookiecutter.dependency_manager != 'pip' else 'pip install <package>'}}' to install new dependencies and '{{'poetry remove <package>' if cookiecutter.dependency_manager != 'pip' else 'pip uninstall <package>'}}' to remove them.{{' Freeze your dependencies into pyproject.toml with \'make freeze\'.' if cookiecutter.dependency_manager == 'pip'}}"
 
 install-brew:
@@ -109,6 +107,8 @@ setup-git:
 		git config --local user.signingkey ${GPG_KEY_ID}; \
 		echo "Signed with GPG key ID ${GPG_KEY_ID}."; \
 	fi
+
+install-pre-commit:  ## Install pre-commit hooks
 	@{{'poetry run ' if cookiecutter.dependency_manager != 'pip' else '. .venv/bin/activate && '}}pre-commit install
 
 add-repo-to-git: