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NEWS
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esrindex 1.1.1 (In progress)
----------------------------------------------------------------
FUNCTIONALITY CHANGES
- Replace gapindex function arguments with version 3.0.0 argument
names.
- Add option to exclude years from the time series using the
exclude_years field in region_settings. Used by get_group_data().
- Add option to exclude years from rema fitting using min_rema_year.
Used by get_group_data().
- get_group_data() fits index trends by stratum for regions
without subarea biomass estimates.
esrindex 1.1.0 (December 5, 2024)
----------------------------------------------------------------
FUNCTIONALITY CHANGES
- Replace manual species code retrieval with queries on
GAP_PRODUCTS tables (TAXONOMIC_CLASSIFICATION, TAXONOMIC_CHANGES)
to ensure that groups get updated automatically when there are
taxonomic changes. The change requires the new get_group_codes()
function to handle paraphyletic groupings and functional
groupings that do not follow taxonomic groupings.
esrindex 1.0.1 (November 25, 2024)
----------------------------------------------------------------
BUG FIX
- Update get_group_data() to use gapindex 3.0.0 syntax.
esrindex 1.0.0 (November 8, 2024) - First production release
----------------------------------------------------------------
NEW FEATURES
- plot_region_rema() makes individual timeseries plots for each
group.
esrindex 0.1.4 (October 1, 2024)
----------------------------------------------------------------
BUG FIX
- Clean up build errors.
esrindex 0.1.3 (September 25, 2024)
----------------------------------------------------------------
NEW FEATURES
- Added a plot_cpue_maps() function to generate maps of CPUE by
group and region.
FUNCTIONALITY CHANGES
- plot_region_rema() no longer sets minimum y-axis value to
zero. Now accepts a y_axis_min argument that can be used
to set the minimum y-axis value to zero.
esrindex 0.1.2 (September 16, 2024)
----------------------------------------------------------------
- Added HCL browngreen color palette option to base plots.
esrindex 0.1.1 (September 9, 2024)
----------------------------------------------------------------
- Update data with AI and EBS time series.
esrindex 0.1.0 (August 28, 2024)
----------------------------------------------------------------
- Modify make_esr_chapter() to add option to include references
in chapters using .bib and .csl files.
esrindex 2024.08.22 (August 22, 2024)
----------------------------------------------------------------
- Changed regional and subarea time series figure layouts to
address reviewer comments.
- Changed Pennatulaceans to 'Sea pens' to address reviewer
comments.
esrindex 2024.06.21 (June 21, 2024)
----------------------------------------------------------------
Changed regional time series figure layout to address reviewer
comments.
esrindex 2024.06.20 (June 20, 2024)
----------------------------------------------------------------
Updated sponge and coral groups with the correct SPECIES_CODE
range.