- main.R main entrance of the analysis;
- cohortCharacterizationAndRefine.R perform three steps
- cohortDefinition.R defines vax, pre-vax, and un-vax cohorts
- featureExtraction.R extracts relevant features for analysis
- cohortCharacterizationAndRefine.R refines cohorts and provides cohorts characteristics (i.e. Table 1)
- conceptDiagnosis.R identifies potential over-represented concepts in the COVID analysis - avoid systematic bias.
- BreakthroughFactorsAnalysis.R identifies risk factors associated with breakthrough infections
- covidPositiveComparison.R assessed the vaccine effectiveness in protection infection among different subgroups
- severeOutcomeComparison.R assessed the vaccine effectiveness in protecting from severe outcomes
- longitAnalysis.R reveals how vaccine changes long the time