Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Serve Variants via ClinGen Allele ID #381

Open
bencap opened this issue Jan 27, 2025 · 0 comments · May be fixed by #388
Open

Serve Variants via ClinGen Allele ID #381

bencap opened this issue Jan 27, 2025 · 0 comments · May be fixed by #388
Assignees
@jstone-dev
Labels
app: backend Task implementation touches the backend app: database Task implementation requires database changes type: feature New feature workstream: clinical Task relates to clinical features workstream: pillar Task relates to pillar project
Milestone
Pillar Project

Comments

@bencap
Copy link
Collaborator

bencap commented Jan 27, 2025

Given a ClinGen Allele ID we would like to be able to serve the variant to which it belongs.

When a variant is mapped, we will send it to ClinGen who will provide us an allele ID for the variant. We should store this allele ID, and make it easy to serve variants based on it.
@bencap bencap added app: backend Task implementation touches the backend app: database Task implementation requires database changes type: feature New feature workstream: clinical Task relates to clinical features workstream: pillar Task relates to pillar project labels Jan 27, 2025
@bencap bencap assigned bencap and jstone-dev and unassigned bencap Jan 27, 2025
@bencap bencap added this to the Pillar Project milestone Feb 10, 2025
@bencap bencap linked a pull request Feb 24, 2025 that will close this issue
Variant Search #388
Draft
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@jstone-dev jstone-dev

Labels
app: backend Task implementation touches the backend app: database Task implementation requires database changes type: feature New feature workstream: clinical Task relates to clinical features workstream: pillar Task relates to pillar project
Projects
None yet
Milestone
Pillar Project
Development

Successfully merging a pull request may close this issue.

Variant Search VariantEffect/mavedb-api
2 participants
@bencap @jstone-dev