diff --git a/donut_falls.nf b/donut_falls.nf index 60c37d9..c7c5d46 100755 --- a/donut_falls.nf +++ b/donut_falls.nf @@ -323,7 +323,8 @@ process copy { line = line.strip() if line.startswith('>'): contig = str(line.replace('>','').split()[0]) - circular = gfa_dict[contig]['circular'].replace('Y','true').replace('N','false') + print(gfa_dict[contig]) + circular = gfa_dict[contig]['Is circular'].replace('Y','true').replace('N','false') length = gfa_dict[contig]['Total segment length'] gc_per = gfa_dict[contig]['GC content %'] meandepth = circulocov_dict[contig]['nanopore_meandepth'] @@ -1510,7 +1511,6 @@ process summary { if __name__ == '__main__': main() - """ }