diff --git a/nextflow_schema.json b/nextflow_schema.json index 6ec6bcd..41a0d65 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -17,19 +17,16 @@ "properties": { "sample_sheet": { "type": "string", - "description": "csv file with sample,nanopore fastq file,illumina R1 (optional),illuimina R2 (optional)", - "hidden": false + "description": "csv file with sample,nanopore fastq file,illumina R1 (optional),illuimina R2 (optional)" }, "outdir": { "type": "string", "description": "Specifies where results are saved", - "hidden": false, "default": "donut_falls" }, "sequencing_summary": { "type": "string", - "description": "input channel for nanopore sequencing summary file (optional)", - "hidden": false + "description": "input channel for nanopore sequencing summary file (optional)" } } }, @@ -37,15 +34,11 @@ "title": "Pipeline Configuration options", "type": "object", "description": "Options to configure how the workflow runs.", - "required": [ - "assembler" - ], "properties": { "assembler": { "type": "string", "description": "Specifies which assembler is/assemblers are going to be used.", - "default" : "flye", - "hidden": true + "default" : "flye" } } },