From 3a4886b334fe37a59796e9877815afa806196759 Mon Sep 17 00:00:00 2001
From: Bas Kasemir <20270816+BasMonkey@users.noreply.github.com>
Date: Mon, 22 Jul 2024 13:41:30 +0200
Subject: [PATCH] Lowered the PCT_TARGET_BASES_20X threshold to 93.5%

---
 assets/checkqc_settings.yaml | 2 +-
 assets/multiqc_config.yaml   | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/assets/checkqc_settings.yaml b/assets/checkqc_settings.yaml
index f7757b4..55a493d 100755
--- a/assets/checkqc_settings.yaml
+++ b/assets/checkqc_settings.yaml
@@ -1,7 +1,7 @@
 metrics:
   - filename: "multiqc_picard_HsMetrics.txt"
     qc_col: "PCT_TARGET_BASES_20X"
-    threshold: 0.945
+    threshold: 0.935
     operator: "<="
     report_cols: ["Sample", "PCT_TARGET_BASES_20X"]
     sample_cols: ["Sample"]
diff --git a/assets/multiqc_config.yaml b/assets/multiqc_config.yaml
index da24a95..39a6d4b 100644
--- a/assets/multiqc_config.yaml
+++ b/assets/multiqc_config.yaml
@@ -96,7 +96,7 @@ table_cond_formatting_rules:
     warn:
       - lt: 96
     fail:
-      - lt: 94.5
+      - lt: 93.5
   mqc-generalstats-verifybamid-FREEMIX:
     pass:
       - lt: 4