diff --git a/assets/checkqc_settings.yaml b/assets/checkqc_settings.yaml index f7757b4..55a493d 100755 --- a/assets/checkqc_settings.yaml +++ b/assets/checkqc_settings.yaml @@ -1,7 +1,7 @@ metrics: - filename: "multiqc_picard_HsMetrics.txt" qc_col: "PCT_TARGET_BASES_20X" - threshold: 0.945 + threshold: 0.935 operator: "<=" report_cols: ["Sample", "PCT_TARGET_BASES_20X"] sample_cols: ["Sample"] diff --git a/assets/multiqc_config.yaml b/assets/multiqc_config.yaml index da24a95..39a6d4b 100644 --- a/assets/multiqc_config.yaml +++ b/assets/multiqc_config.yaml @@ -96,7 +96,7 @@ table_cond_formatting_rules: warn: - lt: 96 fail: - - lt: 94.5 + - lt: 93.5 mqc-generalstats-verifybamid-FREEMIX: pass: - lt: 4