Lowered the PCT_TARGET_BASES_20X threshold to 93.5%

UMCUGenetics · Jul 22, 2024 · 3a4886b · 3a4886b
1 parent 56e7075
commit 3a4886b
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/assets/checkqc_settings.yaml b/assets/checkqc_settings.yaml
@@ -1,7 +1,7 @@
 metrics:
   - filename: "multiqc_picard_HsMetrics.txt"
     qc_col: "PCT_TARGET_BASES_20X"
-    threshold: 0.945
+    threshold: 0.935
     operator: "<="
     report_cols: ["Sample", "PCT_TARGET_BASES_20X"]
     sample_cols: ["Sample"]

diff --git a/assets/multiqc_config.yaml b/assets/multiqc_config.yaml
@@ -96,7 +96,7 @@ table_cond_formatting_rules:
     warn:
       - lt: 96
     fail:
-      - lt: 94.5
+      - lt: 93.5
   mqc-generalstats-verifybamid-FREEMIX:
     pass:
       - lt: 4
-Original file line number
+Diff line change
@@ Expand Up / @@ -96,7 +96,7 @@ table_cond_formatting_rules: @@
         warn:
           - lt: 96
         fail:
-          - lt: 94.5
+          - lt: 93.5
       mqc-generalstats-verifybamid-FREEMIX:
         pass:
           - lt: 4
@@ Expand Down @@