Test replacing janky trycycler implementation with autocycler

[georgiesamaha]

Autocycler is here! We need to compare it to trycycler to confirm it is the right approach for our pipeline. into subsample reads, assembly of subsampled reads, compress input, cluster contigs, trim and resolve QC-passing clusters, combine resolved clusters

• Installation for manual tests
• Test fully automated assembly
• Use autocycler table metrics to evaluate assembly
• Breakdown autocycler commands into processes for nextflow implementation, benchmark resource requirements
• Identify trycycler and manual curation modules in our pipeline to remove
• Implement autocycler and remove trycycler processes from this codebase
• New release of codebase v2.0.0