diff --git a/indication_paths.json b/indication_paths.json index f566f40b6..2314f0c58 100644 --- a/indication_paths.json +++ b/indication_paths.json @@ -510,7 +510,7 @@ { "id": "GO:0006260", "label": "BiologicalProcess", - "name": "Bactierial DNA Replication" + "name": "Bacterial DNA replication" }, { "id": "GO:0006412", @@ -2737,7 +2737,7 @@ { "key": "positively regulates", "source": "MESH:D008914", - "target": "REACT:R-HSA-568499" + "target": "REACT:R-HSA-5684996" }, { "key": "produces", @@ -2755,25 +2755,20 @@ "target": "MESH:D000505" }, { - "key": "positively regulates", - "source": "REACT:R-HSA-568499", + "key": "contributes to", + "source": "REACT:R-HSA-5684996", "target": "GO:0043066" }, { - "key": "molecularly interacts with", + "key": "participates in", "source": "UniProt:P48048", - "target": "CHEBI:29103" + "target": "GO:0060081" }, { "key": "located in", "source": "GO:0043066", "target": "CL:0002559" }, - { - "key": "contributes to", - "source": "CHEBI:29103", - "target": "GO:0060081" - }, { "key": "affected by", "source": "CL:0002559", @@ -2782,11 +2777,11 @@ { "key": "negatively regulates", "source": "GO:0060081", - "target": "GO:0007204" + "target": "GO:0070509" }, { "key": "negatively correlated with", - "source": "GO:0007204", + "source": "GO:0070509", "target": "GO:0042311" }, { @@ -2818,7 +2813,7 @@ "name": "dermal papillary cells" }, { - "id": "REACT:R-HSA-568499", + "id": "REACT:R-HSA-5684996", "label": "Pathway", "name": "ERK1/ERK2 pathway" }, @@ -2832,11 +2827,6 @@ "label": "BiologicalProcess", "name": "negative regulation of apoptotic process" }, - { - "id": "CHEBI:29103", - "label": "ChemicalSubstance", - "name": "potassium(1+)" - }, { "id": "CL:0002559", "label": "Cell", @@ -2848,9 +2838,9 @@ "name": "membrane hyperpolarization" }, { - "id": "GO:0007204", + "id": "GO:0070509", "label": "BiologicalProcess", - "name": "positive regulation of cytosolic calcium ion concentration" + "name": "transmembrane calcium influx" }, { "id": "GO:0042311", @@ -2884,31 +2874,21 @@ "drugbank": "DB:DB00350" }, "links": [ - { - "key": "positively regulates", - "source": "MESH:D008914", - "target": "UniProt:P48048" - }, { "key": "increases activity of", "source": "MESH:D008914", "target": "UniProt:P48048" }, { - "key": "molecularly interacts with", + "key": "participates in", "source": "UniProt:P48048", - "target": "CHEBI:29103" + "target": "GO:0060081" }, { "key": "participates in", "source": "UniProt:P48048", "target": "GO:0042311" }, - { - "key": "contributes to", - "source": "CHEBI:29103", - "target": "GO:0060081" - }, { "key": "negatively regulates", "source": "GO:0042311", @@ -2917,7 +2897,7 @@ { "key": "negatively regulates", "source": "GO:0060081", - "target": "GO:0007204" + "target": "GO:0070509" }, { "key": "positively correlated with", @@ -2926,7 +2906,7 @@ }, { "key": "contributes to", - "source": "GO:0007204", + "source": "GO:0070509", "target": "GO:0045907" }, { @@ -2947,11 +2927,6 @@ "label": "Protein", "name": "ATP-sensitive inward rectifier potassium channel 1" }, - { - "id": "CHEBI:29103", - "label": "ChemicalSubstance", - "name": "potassium(1+)" - }, { "id": "GO:0042311", "label": "BiologicalProcess", @@ -2968,9 +2943,9 @@ "name": "Blood Pressure" }, { - "id": "GO:0007204", + "id": "GO:0070509", "label": "BiologicalProcess", - "name": "positive regulation of cytosolic calcium ion concentration" + "name": "transmembrane calcium influx" }, { "id": "GO:0045907", @@ -8723,16 +8698,16 @@ { "key": "positively regulates", "source": "UniProt:P07550", - "target": "GO:0008294" + "target": "UniProt:B7Z2C7" }, { - "key": "positively regulates", - "source": "GO:0008294", - "target": "GO:0006171" + "key": "increases abundance of", + "source": "UniProt:B7Z2C7", + "target": "CHEBI:17489" }, { "key": "positively correlated with", - "source": "GO:0006171", + "source": "CHEBI:17489", "target": "GO:0044557" }, { @@ -8759,14 +8734,14 @@ "name": "Beta-2 adrenergic receptor" }, { - "id": "GO:0008294", - "label": "BiologicalProcess", - "name": "calcium- and calmodulin-responsive adenylate cyclase activity" + "id": "UniProt:B7Z2C7", + "label": "Protein", + "name": "Adenylate cyclase" }, { - "id": "GO:0006171", - "label": "BiologicalProcess", - "name": "cAMP biosynthetic process" + "id": "CHEBI:17489", + "label": "ChemicalSubstance", + "name": "3',5'-cyclic AMP" }, { "id": "GO:0044557", @@ -15469,28 +15444,23 @@ "target": "UniProt:P48048" }, { - "key": "positively regulates", + "key": "participates in", "source": "UniProt:Q14654", - "target": "GO:0051899" + "target": "GO:0060081" }, { - "key": "positively regulates", + "key": "participates in", "source": "UniProt:P48048", - "target": "GO:0051899" + "target": "GO:0060081" }, { - "key": "positively regulates", - "source": "GO:0051899", + "key": "negatively regulates", + "source": "GO:0060081", "target": "GO:0070509" }, { - "key": "located in", + "key": "positively regulates", "source": "GO:0070509", - "target": "CL:0000169" - }, - { - "key": "positively correlated with", - "source": "CL:0000169", "target": "GO:0030073" }, { @@ -15522,20 +15492,15 @@ "name": "ATP-sensitive inward rectifier potassium channel 1" }, { - "id": "GO:0051899", + "id": "GO:0060081", "label": "BiologicalProcess", - "name": "membrane depolarization" + "name": "membrane hyperpolarization" }, { "id": "GO:0070509", "label": "BiologicalProcess", "name": "transmembrane calcium influx" }, - { - "id": "CL:0000169", - "label": "Cell", - "name": "pancreatic beta cell" - }, { "id": "GO:0030073", "label": "BiologicalProcess", @@ -18884,6 +18849,128 @@ ], "reference": "https://www.targetvalidation.org/summary?drug=CHEMBL388590 https://en.wikipedia.org/wiki/Uricosuric#Pharmacology https://en.wikipedia.org/wiki/Gout#Cause" }, + { + "directed": true, + "graph": { + "disease": "Obesity", + "disease_mesh": "MESH:D009765", + "drug": "phendimetrazine", + "drug_mesh": "MESH:C100294", + "drugbank": "DB:DB01579" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C100294", + "target": "UniProt:P35348" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P35348", + "target": "GO:0032098" + }, + { + "key": "positively regulates", + "source": "GO:0032098", + "target": "GO:0008152" + }, + { + "key": "prevents", + "source": "GO:0008152", + "target": "MESH:D009765" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C100294", + "label": "Drug", + "name": "phendimetrazine" + }, + { + "id": "UniProt:P35348", + "label": "Protein", + "name": "Alpha-1A adrenergic receptor" + }, + { + "id": "GO:0032098", + "label": "BiologicalProcess", + "name": "appetite" + }, + { + "id": "GO:0008152", + "label": "BiologicalProcess", + "name": "metabolic process" + }, + { + "id": "MESH:D009765", + "label": "Disease", + "name": "Obesity" + } + ], + "reference": "https://go.drugbank.com/drugs/DB01579#mechanismofaction" + }, + { + "directed": true, + "graph": { + "disease": "Obesity", + "disease_mesh": "MESH:D009765", + "drug": "phendimetrazine", + "drug_mesh": "MESH:C100294", + "drugbank": "DB:DB01579" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C100294", + "target": "UniProt:P35368" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P35368", + "target": "GO:0032098" + }, + { + "key": "positively regulates", + "source": "GO:0032098", + "target": "GO:0008152" + }, + { + "key": "prevents", + "source": "GO:0008152", + "target": "MESH:D009765" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C100294", + "label": "Drug", + "name": "phendimetrazine" + }, + { + "id": "UniProt:P35368", + "label": "Protein", + "name": "Alpha-1B adrenergic receptor" + }, + { + "id": "GO:0032098", + "label": "BiologicalProcess", + "name": "appetite" + }, + { + "id": "GO:0008152", + "label": "BiologicalProcess", + "name": "metabolic process" + }, + { + "id": "MESH:D009765", + "label": "Disease", + "name": "Obesity" + } + ], + "reference": "https://go.drugbank.com/drugs/DB01579#mechanismofaction" + }, { "directed": true, "graph": { @@ -18951,8 +19038,8 @@ "disease": "Obesity", "disease_mesh": "MESH:D009765", "drug": "phendimetrazine", - "drug_mesh": "DB:DB01579", - "drugbank": "MESH:C100294" + "drug_mesh": "MESH:C100294", + "drugbank": "DB:DB01579" }, "links": [ { @@ -19022,8 +19109,8 @@ "disease": "Obesity", "disease_mesh": "MESH:D009765", "drug": "phendimetrazine", - "drug_mesh": "DB:DB01579", - "drugbank": "MESH:C100294" + "drug_mesh": "MESH:C100294", + "drugbank": "DB:DB01579" }, "links": [ { @@ -19113,7 +19200,7 @@ "target": "GO:0061534" }, { - "key": "treats", + "key": "prevents", "source": "GO:0061534", "target": "MESH:D004832" } @@ -19194,7 +19281,7 @@ "target": "GO:0022008" }, { - "key": "contributes to", + "key": "prevents", "source": "GO:0022008", "target": "MESH:D004832" } @@ -19239,87 +19326,6 @@ ], "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" }, - { - "directed": true, - "graph": { - "disease": "Absence seizure", - "disease_mesh": "MESH:D004832", - "drug": "valproic acid", - "drug_mesh": "MESH:D014635", - "drugbank": "DB:DB00313" - }, - "links": [ - { - "key": "molecularly interacts with", - "source": "MESH:D014635", - "target": "UniProt:P36507" - }, - { - "key": "increases activity of", - "source": "UniProt:P36507", - "target": "UniProt:P28482" - }, - { - "key": "increases expression of", - "source": "UniProt:P28482", - "target": "UniProt:P19419" - }, - { - "key": "increases abundance of", - "source": "UniProt:P19419", - "target": "UniProt:P17677" - }, - { - "key": "positively regulates", - "source": "UniProt:P17677", - "target": "GO:0022008" - }, - { - "key": "contributes to", - "source": "GO:0022008", - "target": "MESH:D004832" - } - ], - "multigraph": true, - "nodes": [ - { - "id": "MESH:D014635", - "label": "Drug", - "name": "valproic acid" - }, - { - "id": "UniProt:P36507", - "label": "Protein", - "name": "mitogen-activated protein kinase (MEK)" - }, - { - "id": "UniProt:P28482", - "label": "Protein", - "name": "Extracellular Signal-Regulated Kinase" - }, - { - "id": "UniProt:P19419", - "label": "Protein", - "name": "ELK-1" - }, - { - "id": "UniProt:P17677", - "label": "Protein", - "name": "growth cone-associated protein-43" - }, - { - "id": "GO:0022008", - "label": "BiologicalProcess", - "name": "neurogenesis" - }, - { - "id": "MESH:D004832", - "label": "Disease", - "name": "Absence seizure" - } - ], - "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" - }, { "directed": true, "graph": { @@ -19361,7 +19367,7 @@ "target": "GO:0061534" }, { - "key": "treats", + "key": "prevents", "source": "GO:0061534", "target": "MESH:D004832" } @@ -19414,8 +19420,8 @@ { "directed": true, "graph": { - "disease": "Bipolar disorder", - "disease_mesh": "MESH:D001714", + "disease": "Absence seizure", + "disease_mesh": "MESH:D004832", "drug": "valproic acid", "drug_mesh": "MESH:D014635", "drugbank": "DB:DB00313" @@ -19424,22 +19430,22 @@ { "key": "decreases activity of", "source": "MESH:D014635", - "target": "InterPro:IPR002587" + "target": "UniProt:Q9UKV0" }, { - "key": "decreases activity of", - "source": "InterPro:IPR002587", - "target": "UniProt:P29218" + "key": "positively regulates", + "source": "UniProt:Q9UKV0", + "target": "GO:0071442" }, { - "key": "decreases abundance of", - "source": "UniProt:P29218", - "target": "MESH:D007294" + "key": "increases expression of", + "source": "GO:0071442", + "target": "UniProt:P23560" }, { - "key": "correlated with", - "source": "MESH:D007294", - "target": "MESH:D001714" + "key": "prevents", + "source": "UniProt:P23560", + "target": "MESH:D004832" } ], "multigraph": true, @@ -19450,24 +19456,24 @@ "name": "valproic acid" }, { - "id": "InterPro:IPR002587", - "label": "GeneFamily", - "name": "myo-inositol-1-phophate synthetase" + "id": "UniProt:Q9UKV0", + "label": "Protein", + "name": "histone deactylase (HDAC)" }, { - "id": "UniProt:P29218", - "label": "Protein", - "name": "inositol monophosphatase" + "id": "GO:0071442", + "label": "BiologicalProcess", + "name": "H3 hyperacetylation" }, { - "id": "MESH:D007294", - "label": "ChemicalSubstance", - "name": "inositol" + "id": "UniProt:P23560", + "label": "Protein", + "name": "brain-derived neurotrophic factor (BDNF)" }, { - "id": "MESH:D001714", + "id": "MESH:D004832", "label": "Disease", - "name": "Bipolar disorder" + "name": "Absence seizure" } ], "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" @@ -19475,37 +19481,42 @@ { "directed": true, "graph": { - "disease": "Bipolar disorder", - "disease_mesh": "MESH:D001714", + "disease": "Absence seizure", + "disease_mesh": "MESH:D004832", "drug": "valproic acid", "drug_mesh": "MESH:D014635", "drugbank": "DB:DB00313" }, "links": [ { - "key": "negatively regulates", + "key": "decreases activity of", "source": "MESH:D014635", - "target": "UniProt:P29966" + "target": "UniProt:P51649" }, { - "key": "negatively regulates", - "source": "UniProt:P29966", - "target": "UniProt:P17252" + "key": "increases abundance of", + "source": "UniProt:P51649", + "target": "MESH:C009338" }, { - "key": "located in", - "source": "UniProt:P17252", - "target": "UBERON:0001870" + "key": "decreases activity of", + "source": "MESH:C009338", + "target": "UniProt:P80404" }, { - "key": "contributes to", - "source": "UBERON:0001870", - "target": "GO:0051823" + "key": "disrupts", + "source": "UniProt:P80404", + "target": "REACT:R-HSA-1430728" + }, + { + "key": "positively regulates", + "source": "REACT:R-HSA-1430728", + "target": "GO:0061534" }, { "key": "treats", - "source": "GO:0051823", - "target": "MESH:D001714" + "source": "GO:0061534", + "target": "MESH:D004832" } ], "multigraph": true, @@ -19516,29 +19527,34 @@ "name": "valproic acid" }, { - "id": "UniProt:P29966", + "id": "UniProt:P51649", "label": "Protein", - "name": "Myristoylated alanine-rich C kinase substrate" + "name": "succinic semialdehyde dehydrogenase" }, { - "id": "UniProt:P17252", + "id": "MESH:C009338", + "label": "ChemicalSubstance", + "name": "succinic semialdehyde" + }, + { + "id": "UniProt:P80404", "label": "Protein", - "name": "Protein kinase C alpha type" + "name": "GABA transaminase" }, { - "id": "UBERON:0001870", - "label": "GrossAnatomicalStructure", - "name": "frontal cortex" + "id": "REACT:R-HSA-1430728", + "label": "Pathway", + "name": "GABA metabolism" }, { - "id": "GO:0051823", + "id": "GO:0061534", "label": "BiologicalProcess", - "name": "synaptic remodeling" + "name": "GABAergic neurotransmission" }, { - "id": "MESH:D001714", + "id": "MESH:D004832", "label": "Disease", - "name": "Bipolar disorder" + "name": "Absence seizure" } ], "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" @@ -19546,37 +19562,42 @@ { "directed": true, "graph": { - "disease": "Bipolar disorder", - "disease_mesh": "MESH:D001714", + "disease": "Absence seizure", + "disease_mesh": "MESH:D004832", "drug": "valproic acid", "drug_mesh": "MESH:D014635", "drugbank": "DB:DB00313" }, "links": [ { - "key": "negatively regulates", + "key": "molecularly interacts with", "source": "MESH:D014635", - "target": "UniProt:P29966" + "target": "UniProt:P36507" }, { - "key": "negatively regulates", - "source": "UniProt:P29966", - "target": "UniProt:Q02156" + "key": "increases activity of", + "source": "UniProt:P36507", + "target": "UniProt:P28482" }, { - "key": "located in", - "source": "UniProt:Q02156", - "target": "UBERON:0001870" + "key": "increases expression of", + "source": "UniProt:P28482", + "target": "UniProt:P19419" }, { - "key": "contributes to", - "source": "UBERON:0001870", - "target": "GO:0051823" + "key": "increases abundance of", + "source": "UniProt:P19419", + "target": "UniProt:P01100" }, { - "key": "treats", - "source": "GO:0051823", - "target": "MESH:D001714" + "key": "positively regulates", + "source": "UniProt:P01100", + "target": "GO:0022008" + }, + { + "key": "contributes to", + "source": "GO:0022008", + "target": "MESH:D004832" } ], "multigraph": true, @@ -19587,29 +19608,34 @@ "name": "valproic acid" }, { - "id": "UniProt:P29966", + "id": "UniProt:P36507", "label": "Protein", - "name": "Myristoylated alanine-rich C kinase substrate" + "name": "mitogen-activated protein kinase (MEK)" }, { - "id": "UniProt:Q02156", + "id": "UniProt:P28482", "label": "Protein", - "name": "protein kinase C (PKC)-\u03b5" + "name": "Extracellular Signal-Regulated Kinase" }, { - "id": "UBERON:0001870", - "label": "GrossAnatomicalStructure", - "name": "frontal cortex" + "id": "UniProt:P19419", + "label": "Protein", + "name": "ELK-1" }, { - "id": "GO:0051823", + "id": "UniProt:P01100", + "label": "Protein", + "name": "c-fos" + }, + { + "id": "GO:0022008", "label": "BiologicalProcess", - "name": "synaptic remodeling" + "name": "neurogenesis" }, { - "id": "MESH:D001714", + "id": "MESH:D004832", "label": "Disease", - "name": "Bipolar disorder" + "name": "Absence seizure" } ], "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" @@ -19617,32 +19643,42 @@ { "directed": true, "graph": { - "disease": "Epilepsy", - "disease_mesh": "MESH:D004827", + "disease": "Absence seizure", + "disease_mesh": "MESH:D004832", "drug": "valproic acid", "drug_mesh": "MESH:D014635", "drugbank": "DB:DB00313" }, "links": [ { - "key": "negatively regulates", + "key": "molecularly interacts with", "source": "MESH:D014635", - "target": "REACT:R-HSA-211976" + "target": "UniProt:P36507" }, { - "key": "disrupts", - "source": "REACT:R-HSA-211976", - "target": "MESH:D008560" + "key": "increases activity of", + "source": "UniProt:P36507", + "target": "UniProt:P28482" + }, + { + "key": "increases expression of", + "source": "UniProt:P28482", + "target": "UniProt:P19419" + }, + { + "key": "increases abundance of", + "source": "UniProt:P19419", + "target": "UniProt:P17677" }, { "key": "positively regulates", - "source": "MESH:D008560", - "target": "GO:0099611" + "source": "UniProt:P17677", + "target": "GO:0022008" }, { - "key": "correlated with", - "source": "GO:0099611", - "target": "MESH:D004827" + "key": "contributes to", + "source": "GO:0022008", + "target": "MESH:D004832" } ], "multigraph": true, @@ -19653,27 +19689,34 @@ "name": "valproic acid" }, { - "alt_ids": [ - "KEGG:M00100" - ], - "id": "REACT:R-HSA-211976", - "label": "Pathway", - "name": "sterol metabolism" + "id": "UniProt:P36507", + "label": "Protein", + "name": "mitogen-activated protein kinase (MEK)" }, { - "id": "MESH:D008560", - "label": "BiologicalProcess", - "name": "membrane fluidity" + "id": "UniProt:P28482", + "label": "Protein", + "name": "Extracellular Signal-Regulated Kinase" }, { - "id": "GO:0099611", + "id": "UniProt:P19419", + "label": "Protein", + "name": "ELK-1" + }, + { + "id": "UniProt:P17677", + "label": "Protein", + "name": "growth cone-associated protein-43" + }, + { + "id": "GO:0022008", "label": "BiologicalProcess", - "name": "action potential threshold" + "name": "neurogenesis" }, { - "id": "MESH:D004827", + "id": "MESH:D004832", "label": "Disease", - "name": "Epilepsy" + "name": "Absence seizure" } ], "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" @@ -19681,32 +19724,47 @@ { "directed": true, "graph": { - "disease": "Epilepsy", - "disease_mesh": "MESH:D004827", + "disease": "Absence seizure", + "disease_mesh": "MESH:D004832", "drug": "valproic acid", "drug_mesh": "MESH:D014635", "drugbank": "DB:DB00313" }, "links": [ { - "key": "negatively regulates", + "key": "molecularly interacts with", "source": "MESH:D014635", - "target": "REACT:R-HSA-556833" + "target": "UniProt:P36507" }, { - "key": "disrupts", - "source": "REACT:R-HSA-556833", - "target": "MESH:D008560" + "key": "increases activity of", + "source": "UniProt:P36507", + "target": "UniProt:P28482" + }, + { + "key": "increases expression of", + "source": "UniProt:P28482", + "target": "UniProt:P19419" + }, + { + "key": "increases abundance of", + "source": "UniProt:P19419", + "target": "UniProt:P23560" + }, + { + "key": "increases activity of", + "source": "UniProt:P23560", + "target": "UniProt:P14867" }, { "key": "positively regulates", - "source": "MESH:D008560", - "target": "GO:0099611" + "source": "UniProt:P14867", + "target": "GO:0061534" }, { - "key": "correlated with", - "source": "GO:0099611", - "target": "MESH:D004827" + "key": "treats", + "source": "GO:0061534", + "target": "MESH:D004832" } ], "multigraph": true, @@ -19717,27 +19775,39 @@ "name": "valproic acid" }, { - "alt_ids": [ - "KEGG:M00561" - ], - "id": "REACT:R-HSA-556833", - "label": "Pathway", - "name": "glycerolipids metabolism" + "id": "UniProt:P36507", + "label": "Protein", + "name": "mitogen-activated protein kinase (MEK)" }, { - "id": "MESH:D008560", - "label": "BiologicalProcess", - "name": "membrane fluidity" + "id": "UniProt:P28482", + "label": "Protein", + "name": "Extracellular Signal-Regulated Kinase" }, { - "id": "GO:0099611", + "id": "UniProt:P19419", + "label": "Protein", + "name": "ELK-1" + }, + { + "id": "UniProt:P23560", + "label": "Protein", + "name": "brain-derived neurotrophic factor (BDNF)" + }, + { + "id": "UniProt:P14867", + "label": "Protein", + "name": "GABAA receptors" + }, + { + "id": "GO:0061534", "label": "BiologicalProcess", - "name": "action potential threshold" + "name": "GABAergic neurotransmission" }, { - "id": "MESH:D004827", + "id": "MESH:D004832", "label": "Disease", - "name": "Epilepsy" + "name": "Absence seizure" } ], "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" @@ -19745,8 +19815,8 @@ { "directed": true, "graph": { - "disease": "Epilepsy", - "disease_mesh": "MESH:D004827", + "disease": "Absence seizure", + "disease_mesh": "MESH:D004832", "drug": "valproic acid", "drug_mesh": "MESH:D014635", "drugbank": "DB:DB00313" @@ -19763,19 +19833,14 @@ "target": "GO:0045893" }, { - "key": "decreases activity of", + "key": "increases expression of", "source": "GO:0045893", - "target": "UniProt:P04406" - }, - { - "key": "prevents", - "source": "UniProt:P04406", - "target": "MESH:D009410" + "target": "UniProt:P23560" }, { - "key": "correlated with", - "source": "MESH:D009410", - "target": "MESH:D004827" + "key": "treats", + "source": "UniProt:P23560", + "target": "MESH:D004832" } ], "multigraph": true, @@ -19796,19 +19861,14 @@ "name": "gene transcription" }, { - "id": "UniProt:P04406", + "id": "UniProt:P23560", "label": "Protein", - "name": "glyceraldehyde-3-phosphate dehydrogenase" - }, - { - "id": "MESH:D009410", - "label": "BiologicalProcess", - "name": "neural degeneration" + "name": "brain-derived neurotrophic factor (BDNF)" }, { - "id": "MESH:D004827", + "id": "MESH:D004832", "label": "Disease", - "name": "Epilepsy" + "name": "Absence seizure" } ], "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" @@ -19816,8 +19876,8 @@ { "directed": true, "graph": { - "disease": "Absence seizure", - "disease_mesh": "MESH:D004832", + "disease": "Bipolar disorder", + "disease_mesh": "MESH:D001714", "drug": "valproic acid", "drug_mesh": "MESH:D014635", "drugbank": "DB:DB00313" @@ -19826,22 +19886,22 @@ { "key": "decreases activity of", "source": "MESH:D014635", - "target": "UniProt:Q9UKV0" + "target": "InterPro:IPR002587" }, { - "key": "positively regulates", - "source": "UniProt:Q9UKV0", - "target": "GO:0045893" + "key": "decreases activity of", + "source": "InterPro:IPR002587", + "target": "UniProt:P29218" }, { - "key": "increases expression of", - "source": "GO:0045893", - "target": "UniProt:P23560" + "key": "decreases abundance of", + "source": "UniProt:P29218", + "target": "MESH:D007294" }, { - "key": "treats", - "source": "UniProt:P23560", - "target": "MESH:D004832" + "key": "correlated with", + "source": "MESH:D007294", + "target": "MESH:D001714" } ], "multigraph": true, @@ -19852,24 +19912,24 @@ "name": "valproic acid" }, { - "id": "UniProt:Q9UKV0", - "label": "Protein", - "name": "histone deactylase (HDAC)" + "id": "InterPro:IPR002587", + "label": "GeneFamily", + "name": "myo-inositol-1-phophate synthetase" }, { - "id": "GO:0045893", - "label": "BiologicalProcess", - "name": "gene transcription" + "id": "UniProt:P29218", + "label": "Protein", + "name": "inositol monophosphatase" }, { - "id": "UniProt:P23560", - "label": "Protein", - "name": "brain-derived neurotrophic factor (BDNF)" + "id": "MESH:D007294", + "label": "ChemicalSubstance", + "name": "inositol" }, { - "id": "MESH:D004832", + "id": "MESH:D001714", "label": "Disease", - "name": "Absence seizure" + "name": "Bipolar disorder" } ], "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" @@ -19877,37 +19937,37 @@ { "directed": true, "graph": { - "disease": "migraine", - "disease_mesh": "MESH:D008881", + "disease": "Bipolar disorder", + "disease_mesh": "MESH:D001714", "drug": "valproic acid", "drug_mesh": "MESH:D014635", "drugbank": "DB:DB00313" }, "links": [ { - "key": "decreases activity of", + "key": "negatively regulates", "source": "MESH:D014635", - "target": "UniProt:O14975" + "target": "UniProt:P29966" }, { - "key": "located in", - "source": "UniProt:O14975", - "target": "UBERON:0000955" + "key": "negatively regulates", + "source": "UniProt:P29966", + "target": "UniProt:P17252" }, { - "key": "decreases abundance of", - "source": "UBERON:0000955", - "target": "MESH:C026563" + "key": "located in", + "source": "UniProt:P17252", + "target": "UBERON:0001870" }, { - "key": "participates in", - "source": "MESH:C026563", - "target": "REACT:R-HSA-2162123" + "key": "contributes to", + "source": "UBERON:0001870", + "target": "GO:0051823" }, { "key": "treats", - "source": "REACT:R-HSA-2162123", - "target": "MESH:D008881" + "source": "GO:0051823", + "target": "MESH:D001714" } ], "multigraph": true, @@ -19918,29 +19978,29 @@ "name": "valproic acid" }, { - "id": "UniProt:O14975", + "id": "UniProt:P29966", "label": "Protein", - "name": "microsomal long-chain fatty acyl-CoA synthetase" + "name": "Myristoylated alanine-rich C kinase substrate" }, { - "id": "UBERON:0000955", - "label": "GrossAnatomicalStructure", - "name": "brain" + "id": "UniProt:P17252", + "label": "Protein", + "name": "Protein kinase C alpha type" }, { - "id": "MESH:C026563", - "label": "ChemicalSubstance", - "name": "Arachidonoyl-CoA" + "id": "UBERON:0001870", + "label": "GrossAnatomicalStructure", + "name": "frontal cortex" }, { - "id": "REACT:R-HSA-2162123", - "label": "Pathway", - "name": "inflammatory prostaglandins production" + "id": "GO:0051823", + "label": "BiologicalProcess", + "name": "synaptic remodeling" }, { - "id": "MESH:D008881", + "id": "MESH:D001714", "label": "Disease", - "name": "migraine" + "name": "Bipolar disorder" } ], "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" @@ -19948,9366 +20008,33687 @@ { "directed": true, "graph": { - "disease": "Human immunodeficiency virus infection", - "disease_mesh": "MESH:D015658", - "drug": "zidovudine", - "drug_mesh": "MESH:D015215", - "drugbank": "DB:DB00495" + "disease": "Bipolar disorder", + "disease_mesh": "MESH:D001714", + "drug": "valproic acid", + "drug_mesh": "MESH:D014635", + "drugbank": "DB:DB00313" }, "links": [ { - "key": "increases abundance of", - "source": "MESH:D015215", - "target": "MESH:C052873" + "key": "negatively regulates", + "source": "MESH:D014635", + "target": "UniProt:P29966" }, { - "key": "decreases activity of", - "source": "MESH:C052873", - "target": "UniProt:Q72547" + "key": "negatively regulates", + "source": "UniProt:P29966", + "target": "UniProt:Q02156" }, { - "key": "in taxon", - "source": "UniProt:Q72547", - "target": "NCBITaxon:11676" + "key": "located in", + "source": "UniProt:Q02156", + "target": "UBERON:0001870" }, { - "key": "expressed in", - "source": "NCBITaxon:11676", - "target": "GO:0039693" + "key": "contributes to", + "source": "UBERON:0001870", + "target": "GO:0051823" }, { - "key": "causes", - "source": "GO:0039693", - "target": "MESH:D015658" + "key": "treats", + "source": "GO:0051823", + "target": "MESH:D001714" } ], "multigraph": true, "nodes": [ { - "id": "MESH:D015215", + "id": "MESH:D014635", "label": "Drug", - "name": "zidovudine" + "name": "valproic acid" }, { - "id": "MESH:C052873", - "label": "ChemicalSubstance", - "name": "zidovudine triphosphate" + "id": "UniProt:P29966", + "label": "Protein", + "name": "Myristoylated alanine-rich C kinase substrate" }, { - "id": "UniProt:Q72547", + "id": "UniProt:Q02156", "label": "Protein", - "name": "HIV-1 reverse transcriptase (RT)" + "name": "protein kinase C (PKC)-\u03b5" }, { - "id": "NCBITaxon:11676", - "label": "OrganismTaxon", - "name": "HIV-1" + "id": "UBERON:0001870", + "label": "GrossAnatomicalStructure", + "name": "frontal cortex" }, { - "id": "GO:0039693", + "id": "GO:0051823", "label": "BiologicalProcess", - "name": "Viral DNA replication" + "name": "synaptic remodeling" }, { - "id": "MESH:D015658", + "id": "MESH:D001714", "label": "Disease", - "name": "Human immunodeficiency virus infection" + "name": "Bipolar disorder" } ], - "reference": "https://go.drugbank.com/drugs/DB00495#mechanismofaction" + "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" }, { "directed": true, "graph": { - "disease": "Opioid dependence", - "disease_mesh": "MESH:D009293", - "drug": "levomethadyl acetate", - "drug_mesh": null, - "drugbank": "DB:DB01227" + "disease": "Epilepsy", + "disease_mesh": "MESH:D004827", + "drug": "valproic acid", + "drug_mesh": "MESH:D014635", + "drugbank": "DB:DB00313" }, "links": [ { - "key": "increases activity of", - "source": "DB:DB01227", - "target": "UniProt:P35372" + "key": "decreases activity of", + "source": "MESH:D014635", + "target": "UniProt:Q9UKV0" }, { - "key": "produces", - "source": "UniProt:P35372", - "target": "GO:0060081" + "key": "positively regulates", + "source": "UniProt:Q9UKV0", + "target": "GO:0071442" + }, + { + "key": "negatively regulates", + "source": "GO:0071442", + "target": "UniProt:P04406" }, { "key": "prevents", - "source": "GO:0060081", - "target": "GO:0019228" + "source": "UniProt:P04406", + "target": "MESH:D009410" }, { - "key": "causes", - "source": "GO:0019228", - "target": "MESH:D009293" + "key": "correlated with", + "source": "MESH:D009410", + "target": "MESH:D004827" } ], "multigraph": true, "nodes": [ { - "id": "DB:DB01227", + "id": "MESH:D014635", "label": "Drug", - "name": "Levomethadyl acetate" + "name": "valproic acid" }, { - "id": "UniProt:P35372", + "id": "UniProt:Q9UKV0", "label": "Protein", - "name": "Mu opioid receptor" + "name": "histone deactylase (HDAC)" }, { - "id": "GO:0060081", + "id": "GO:0071442", "label": "BiologicalProcess", - "name": "hyperpolarization" + "name": "H3 hyperacetylation" }, { - "id": "GO:0019228", + "id": "UniProt:P04406", + "label": "Protein", + "name": "glyceraldehyde-3-phosphate dehydrogenase" + }, + { + "id": "MESH:D009410", "label": "BiologicalProcess", - "name": "neuronal excitability" + "name": "neural degeneration" }, { - "id": "MESH:D009293", + "id": "MESH:D004827", "label": "Disease", - "name": "Opioid dependence" + "name": "epilepsy" } ], - "reference": "https://go.drugbank.com/drugs/DB01227#mechanismofaction" + "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" }, { "directed": true, "graph": { - "disease": "Open-angle glaucoma", - "disease_mesh": "MESH:D005902", - "drug": "levobunolol", - "drug_mesh": "MESH:D002040", - "drugbank": "DB:DB01210" + "disease": "Epilepsy", + "disease_mesh": "MESH:D004827", + "drug": "valproic acid", + "drug_mesh": "MESH:D014635", + "drugbank": "DB:DB00313" }, "links": [ { - "key": "decreases activity of", - "source": "MESH:D002040", - "target": "UniProt:P07550" - }, - { - "key": "increases abundance of", - "source": "UniProt:P07550", - "target": "MESH:D000242" - }, - { - "key": "located in", - "source": "MESH:D000242", - "target": "UBERON:0010427" + "key": "negatively regulates", + "source": "MESH:D014635", + "target": "REACT:R-HSA-211976" }, { - "key": "decreases synthesis of", - "source": "UBERON:0010427", - "target": "UBERON:0001796" + "key": "disrupts", + "source": "REACT:R-HSA-211976", + "target": "MESH:D008560" }, { - "key": "negatively regulates", - "source": "UBERON:0001796", - "target": "HP:0007906" + "key": "positively regulates", + "source": "MESH:D008560", + "target": "GO:0099611" }, { - "key": "treats", - "source": "HP:0007906", - "target": "MESH:D005902" + "key": "correlated with", + "source": "GO:0099611", + "target": "MESH:D004827" } ], "multigraph": true, "nodes": [ { - "id": "MESH:D002040", + "id": "MESH:D014635", "label": "Drug", - "name": "levobunolol" - }, - { - "id": "UniProt:P07550", - "label": "Protein", - "name": "Beta-2 adrenergic receptor" - }, - { - "id": "MESH:D000242", - "label": "ChemicalSubstance", - "name": "cyclic adenosine monophosphate" + "name": "valproic acid" }, { - "id": "UBERON:0010427", - "label": "GrossAnatomicalStructure", - "name": "ciliary processes" + "alt_ids": [ + "KEGG:M00100" + ], + "id": "REACT:R-HSA-211976", + "label": "Pathway", + "name": "sterol metabolism" }, { - "id": "UBERON:0001796", - "label": "GrossAnatomicalStructure", - "name": "aqueous humor" + "id": "MESH:D008560", + "label": "BiologicalProcess", + "name": "membrane fluidity" }, { - "id": "HP:0007906", - "label": "PhenotypicFeature", - "name": "intraocular pressure" + "id": "GO:0099611", + "label": "BiologicalProcess", + "name": "action potential threshold" }, { - "id": "MESH:D005902", + "id": "MESH:D004827", "label": "Disease", - "name": "Open-angle glaucoma" + "name": "Epilepsy" } ], - "reference": "https://go.drugbank.com/drugs/DB01210#mechanismofaction" + "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" }, { "directed": true, "graph": { - "disease": "Open-angle glaucoma", - "disease_mesh": "MESH:D005902", - "drug": "levobunolol", - "drug_mesh": "MESH:D002040", - "drugbank": "DB:DB01210" + "disease": "Epilepsy", + "disease_mesh": "MESH:D004827", + "drug": "valproic acid", + "drug_mesh": "MESH:D014635", + "drugbank": "DB:DB00313" }, "links": [ { - "key": "decreases activity of", - "source": "MESH:D002040", - "target": "UniProt:P08588" - }, - { - "key": "increases abundance of", - "source": "UniProt:P08588", - "target": "MESH:D000242" - }, - { - "key": "located in", - "source": "MESH:D000242", - "target": "UBERON:0010427" + "key": "negatively regulates", + "source": "MESH:D014635", + "target": "REACT:R-HSA-556833" }, { - "key": "decreases synthesis of", - "source": "UBERON:0010427", - "target": "UBERON:0001796" + "key": "disrupts", + "source": "REACT:R-HSA-556833", + "target": "MESH:D008560" }, { - "key": "negatively regulates", - "source": "UBERON:0001796", - "target": "HP:0007906" + "key": "positively regulates", + "source": "MESH:D008560", + "target": "GO:0099611" }, { - "key": "treats", - "source": "HP:0007906", - "target": "MESH:D005902" + "key": "correlated with", + "source": "GO:0099611", + "target": "MESH:D004827" } ], "multigraph": true, "nodes": [ { - "id": "MESH:D002040", + "id": "MESH:D014635", "label": "Drug", - "name": "levobunolol" - }, - { - "id": "UniProt:P08588", - "label": "Protein", - "name": "Beta-1 adrenergic receptor" - }, - { - "id": "MESH:D000242", - "label": "ChemicalSubstance", - "name": "cyclic adenosine monophosphate" + "name": "valproic acid" }, { - "id": "UBERON:0010427", - "label": "GrossAnatomicalStructure", - "name": "ciliary processes" + "alt_ids": [ + "KEGG:M00561" + ], + "id": "REACT:R-HSA-556833", + "label": "Pathway", + "name": "glycerolipids metabolism" }, { - "id": "UBERON:0001796", - "label": "GrossAnatomicalStructure", - "name": "aqueous humor" + "id": "MESH:D008560", + "label": "BiologicalProcess", + "name": "membrane fluidity" }, { - "id": "HP:0007906", - "label": "PhenotypicFeature", - "name": "intraocular pressure" + "id": "GO:0099611", + "label": "BiologicalProcess", + "name": "action potential threshold" }, { - "id": "MESH:D005902", + "id": "MESH:D004827", "label": "Disease", - "name": "Open-angle glaucoma" + "name": "Epilepsy" } ], - "reference": "https://go.drugbank.com/drugs/DB01210#mechanismofaction" + "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" }, { "directed": true, "graph": { - "disease": "Ocular hypertension", - "disease_mesh": "MESH:D009798", - "drug": "levobunolol", - "drug_mesh": "MESH:D002040", - "drugbank": "DB:DB01210" + "disease": "Epilepsy", + "disease_mesh": "MESH:D004827", + "drug": "valproic acid", + "drug_mesh": "MESH:D014635", + "drugbank": "DB:DB00313" }, "links": [ { "key": "decreases activity of", - "source": "MESH:D002040", - "target": "UniProt:P07550" - }, - { - "key": "increases abundance of", - "source": "UniProt:P07550", - "target": "MESH:D000242" + "source": "MESH:D014635", + "target": "UniProt:Q9UKV0" }, { - "key": "located in", - "source": "MESH:D000242", - "target": "UBERON:0010427" + "key": "positively regulates", + "source": "UniProt:Q9UKV0", + "target": "GO:0045893" }, { - "key": "decreases synthesis of", - "source": "UBERON:0010427", - "target": "UBERON:0001796" + "key": "decreases activity of", + "source": "GO:0045893", + "target": "UniProt:P04406" }, { - "key": "negatively regulates", - "source": "UBERON:0001796", - "target": "HP:0007906" + "key": "prevents", + "source": "UniProt:P04406", + "target": "MESH:D009410" }, { - "key": "treats", - "source": "HP:0007906", - "target": "MESH:D009798" + "key": "correlated with", + "source": "MESH:D009410", + "target": "MESH:D004827" } ], "multigraph": true, "nodes": [ { - "id": "MESH:D002040", + "id": "MESH:D014635", "label": "Drug", - "name": "levobunolol" + "name": "valproic acid" }, { - "id": "UniProt:P07550", + "id": "UniProt:Q9UKV0", "label": "Protein", - "name": "Beta-2 adrenergic receptor" - }, - { - "id": "MESH:D000242", - "label": "ChemicalSubstance", - "name": "cyclic adenosine monophosphate" + "name": "histone deactylase (HDAC)" }, { - "id": "UBERON:0010427", - "label": "GrossAnatomicalStructure", - "name": "ciliary processes" + "id": "GO:0045893", + "label": "BiologicalProcess", + "name": "gene transcription" }, { - "id": "UBERON:0001796", - "label": "GrossAnatomicalStructure", - "name": "aqueous humor" + "id": "UniProt:P04406", + "label": "Protein", + "name": "glyceraldehyde-3-phosphate dehydrogenase" }, { - "id": "HP:0007906", - "label": "PhenotypicFeature", - "name": "intraocular pressure" + "id": "MESH:D009410", + "label": "BiologicalProcess", + "name": "neural degeneration" }, { - "id": "MESH:D009798", + "id": "MESH:D004827", "label": "Disease", - "name": "Ocular hypertension" + "name": "Epilepsy" } ], - "reference": "https://go.drugbank.com/drugs/DB01210#mechanismofaction" + "reference": "https://go.drugbank.com/drugs/DB00313#mechanismofaction" }, { "directed": true, "graph": { - "disease": "Ocular hypertension", - "disease_mesh": "MESH:D009798", - "drug": "levobunolol", - "drug_mesh": "MESH:D002040", - "drugbank": "DB:DB01210" + "disease": "migraine", + "disease_mesh": "MESH:D008881", + "drug": "valproic acid", + "drug_mesh": 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https://go.drugbank.com/drugs/DB05812#mechanism-of-action), abiraterone also acts as a partial antagonist of the androgen receptor (UniProt:P10275)", + "directed": true, + "graph": { + "disease": "Malignant tumor of prostate", + "disease_mesh": "MESH:D011471", + "drug": "abiraterone acetate", + "drug_mesh": "MESH:D000069501,MESH:C089740", + "drugbank": "DB:DB05812" + }, + "links": [ + { + "key": "decreases activity of", + "source": "DB:DB05812", + "target": "UniProt:P10275" + }, + { + "key": "positively regulates", + "source": "UniProt:P10275", + "target": "GO:0060769" + }, + { + "key": "positively correlated with", + "source": "GO:0060769", + "target": "MESH:D011471" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "DB:DB05812", + "label": "Drug", + "name": "abiraterone acetate" + }, + { + "id": "UniProt:P10275", + "label": "Protein", + "name": "Androgen receptor" + }, + { + "id": "GO:0060769", + "label": "BiologicalProcess", + "name": "positive regulation of epithelial cell proliferation involved in prostate gland development" + }, + { + "id": "MESH:D011471", + "label": "Disease", + "name": "Malignant tumor of prostate" + } + ], + "reference": "https://en.wikipedia.org/wiki/Abiraterone_acetate#Pharmacology https://en.wikipedia.org/wiki/Androgen_receptor#Mechanism_of_action https://en.wikipedia.org/wiki/Androgen_deprivation_therapy#Methods_based_on_drugs https://www.kegg.jp/entry/D09701" + }, + { + "comments": "DrugBank has this drug as a beta 1 antagonist but data elsewhere does not seem to support the anatagonism role (e.g. https://www.drugs.com/pro/terbutaline.html#s-34090-1, https://www.ebi.ac.uk/chembldb/index.php/compound/inspect/CHEMBL1760 https://www.genome.jp/dbget-bin/www_bget?cpd:C07129)", + "directed": true, + "graph": { + "disease": "Tear film insufficiency", + "disease_mesh": "MESH:D015352", + "drug": "terbutaline", + "drug_mesh": "MESH:D013726", + "drugbank": "DB:DB00871" + }, + "links": [ + { + "key": "positively regulates", + "source": 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beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2" + }, + { + "id": "UniProt:P14060", + "label": "Protein", + "name": "3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1" + }, + { + "id": "GO:0006702", + "label": "BiologicalProcess", + "name": "androgen biosynthetic process" + }, + { + "id": "GO:0006704", + "label": "BiologicalProcess", + "name": "glucocorticoid biosynthetic process" + }, + { + "id": "HP:0030088", + "label": "PhenotypicFeature", + "name": "Increased serum testosterone level" + }, + { + "id": "MESH:D011471", + "label": "Disease", + "name": "Malignant tumor of prostate" + } + ], + "reference": "https://go.drugbank.com/drugs/DB05812#mechanism-of-action https://en.wikipedia.org/wiki/Abiraterone_acetate#Pharmacology https://clincancerres.aacrjournals.org/content/19/13/3353" + }, + { + "comments": "In addition to inhibiting UniProt:P05093 (the main target according to https://go.drugbank.com/drugs/DB05812#mechanism-of-action), abiraterone also inhibits all these cytochrome P450s and can be useful in treating castration-resistant prostate cancers.", + "directed": true, + "graph": { + "disease": "Malignant tumor of prostate", + "disease_mesh": "MESH:D011471", + "drug": "abiraterone acetate", + "drug_mesh": "MESH:D000069501,MESH:C089740", + "drugbank": "DB:DB05812" + }, + "links": [ + { + "key": "decreases activity of", + "source": "DB:DB05812", + "target": "UniProt:P15538" + }, + { + "key": "decreases activity of", + "source": "DB:DB05812", + "target": "UniProt:P08686" + }, + { + "key": "decreases activity of", + "source": "DB:DB05812", + "target": "UniProt:P05177" + }, + { + "key": "decreases activity of", + "source": "DB:DB05812", + "target": "UniProt:P11712" + }, + { + "key": "decreases activity of", + "source": "DB:DB05812", + "target": "UniProt:P08684" + }, + { + "key": "positively regulates", + "source": "UniProt:P15538", + "target": "GO:0008203" + }, + { + "key": "positively regulates", + "source": "UniProt:P08686", + 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These putative mechanism has been observed in vitro/model organisms studies and is on Wikipedia (https://en.wikipedia.org/wiki/Setiptiline#Pharmacodynamics) but not on DrugBank or ChEMBL for example.", + "directed": true, + "graph": { + "disease": "Depressive disorder", + "disease_mesh": "MESH:D003866", + "drug": "setiptiline", + "drug_mesh": "MESH:C050605", + "drugbank": "DB:DB09304" + }, + "links": [ + { + "key": "decreases activity of", + "source": "MESH:C050605", + "target": "UniProt:P08913" + }, + { + "key": "decreases activity of", + "source": "MESH:C050605", + "target": "UniProt:P18089" + }, + { + "key": "decreases activity of", + "source": "MESH:C050605", + "target": "UniProt:P18825" + }, + { + "key": "participates in", + "source": "UniProt:P08913", + "target": "GO:0010700" + }, + { + "key": "participates in", + "source": "UniProt:P18089", + "target": "GO:0010700" + }, + { + "key": "participates in", + "source": "UniProt:P18825", + "target": "GO:0010700" + }, + { + "key": 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"HP:0007906" + }, + { + "key": "positively correlated with", + "source": "HP:0007906", + "target": "MESH:D005902" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:D002217", + "label": "Drug", + "name": "carbachol" + }, + { + "id": "UniProt:Q15822", + "label": "Protein", + "name": "Neuronal acetylcholine receptor subunit alpha-2" + }, + { + "id": "GO:0022848", + "label": "MolecularActivity", + "name": "acetylcholine-gated cation-selective channel activity" + }, + { + "id": "GO:0031594", + "label": "CellularComponent", + "name": "neuromuscular junction" + }, + { + "id": "HP:0000616", + "label": "PhenotypicFeature", + "name": "Miosis" + }, + { + "id": "HP:0007906", + "label": "PhenotypicFeature", + "name": "Ocular Hypertension" + }, + { + "id": "MESH:D005902", + "label": "Disease", + "name": "Open-angle glaucoma" + } + ], + "reference": "https://go.drugbank.com/drugs/DB00411#mechanism-of-action https://pubchem.ncbi.nlm.nih.gov/compound/2551#section=Pharmacology-and-Biochemistry https://en.wikipedia.org/wiki/Carbachol#Chemistry_and_pharmacology https://www.kegg.jp/entry/D00524" + }, + { + "directed": true, + "graph": { + "disease": "Acne vulgaris", + "disease_mesh": "MESH:D000152", + "drug": "tazarotene", + "drug_mesh": "MESH:C086827", + "drugbank": "DB:DB00799" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C086827", + "target": "UniProt:P10276" + }, + { + "key": "increases activity of", + "source": "MESH:C086827", + "target": "UniProt:P28702" + }, + { + "key": "increases activity of", + "source": "MESH:C086827", + "target": "UniProt:P13631" + }, + { + "key": "increases activity of", + "source": "MESH:C086827", + "target": "UniProt:P10826" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P10276", + "target": "UniProt:P00533" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P28702", + "target": "UniProt:P00533" 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+ "target": "GO:0006954" + }, + { + "key": "positively correlated with", + "source": "UniProt:P00533", + "target": "GO:0006954" + }, + { + "key": "positively correlated with", + "source": "MESH:D053536", + "target": "HP:0025249" + }, + { + "key": "positively correlated with", + "source": "MESH:D053553", + "target": "HP:0025249" + }, + { + "key": "positively correlated with", + "source": "HP:0025249", + "target": "MESH:D000152" + }, + { + "key": "positively correlated with", + "source": "GO:0006954", + "target": "MESH:D000152" + }, + { + "key": "positively correlated with", + "source": "MESH:D020782", + "target": "MESH:D000152" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C086827", + "label": "Drug", + "name": "tazarotene" + }, + { + "id": "UniProt:P10276", + "label": "Protein", + "name": "Retinoic acid receptor alpha" + }, + { + "id": "UniProt:P10826", + "label": "Protein", + "name": "Retinoic acid receptor beta" + }, + { + "id": "UniProt:P28702", + "label": "Protein", + "name": "Retinoic acid receptor RXR-beta" + }, + { + "id": "UniProt:P13631", + "label": "Protein", + "name": "Retinoic acid receptor gamma" + }, + { + "id": "MESH:D053536", + "label": "Protein", + "name": "Keratin-16" + }, + { + "id": "MESH:D053553", + "label": "Protein", + "name": "Keratin-6" + }, + { + "id": "MESH:D020782", + "label": "Protein", + "name": "Matrix Metalloproteinases" + }, + { + "id": "UniProt:P00533", + "label": "Protein", + "name": "Epidermal growth factor receptor" + }, + { + "id": "GO:0006954", + "label": "BiologicalProcess", + "name": "inflammatory response" + }, + { + "id": "HP:0025249", + "label": "PhenotypicFeature", + "name": "Comedo" + }, + { + "id": "REACT:R-HSA-181438", + "label": "Pathway", + "name": "Toll Like Receptor 2 (TLR2) Cascade" + }, + { + "id": "MESH:D000152", + "label": "Disease", + "name": "Acne vulgaris" + } + ], + "reference": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4043801/#__sec2title https://go.drugbank.com/drugs/DB00799#mechanism-of-action https://pubmed.ncbi.nlm.nih.gov/28585191/ https://europepmc.org/article/med/32100454" + }, + { + "comments": "MESH:D057705 refers to the movement of leukocytes (the term NCIT:C91439 would have been better suited here but could not be validated)", + "directed": true, + "graph": { + "disease": "Psoriasis", + "disease_mesh": "MESH:D011565", + "drug": "tazarotene", + "drug_mesh": "MESH:C086827", + "drugbank": "DB:DB00799" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C086827", + "target": "UniProt:P10276" + }, + { + "key": "increases activity of", + "source": "MESH:C086827", + "target": "UniProt:P28702" + }, + { + "key": "increases activity of", + "source": "MESH:C086827", + "target": "UniProt:P13631" + }, + { + "key": "increases activity of", + "source": "MESH:C086827", + "target": "UniProt:P10826" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P10276", + "target": "GO:0043616" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P28702", + "target": "GO:0043616" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P13631", + "target": "GO:0043616" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P10826", + "target": "GO:0043616" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P10276", + "target": "MESH:D057705" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P28702", + "target": "MESH:D057705" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P13631", + "target": "MESH:D057705" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P10826", + "target": "MESH:D057705" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P10276", + "target": "MESH:D003873" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P28702", + "target": "MESH:D003873" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P13631", + "target": "MESH:D003873" + }, + { + "key": "negatively correlated with", + "source": "UniProt:P10826", + "target": "MESH:D003873" + }, + { + "key": "positively correlated with", + "source": "MESH:D057705", + "target": "GO:0006954" + }, + { + "key": "positively correlated with", + "source": "GO:0043616", + "target": "MESH:D011565" + }, + { + "key": "positively correlated with", + "source": "GO:0006954", + "target": "MESH:D011565" + }, + { + "key": "positively correlated with", + "source": "MESH:D003873", + "target": "MESH:D011565" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C086827", + "label": "Drug", + "name": "tazarotene" + }, + { + "id": "UniProt:P10276", + "label": "Protein", + "name": "Retinoic acid receptor alpha" + }, + { + "id": "UniProt:P10826", + "label": "Protein", + "name": "Retinoic acid receptor beta" + }, + { + "id": "UniProt:P28702", + "label": "Protein", + "name": "Retinoic acid receptor RXR-beta" + }, + { + "id": "UniProt:P13631", + "label": "Protein", + "name": "Retinoic acid receptor gamma" + }, + { + "id": "MESH:D003873", + "label": "PhenotypicFeature", + "name": "Dermatitis, Exfoliative" + }, + { + "id": "GO:0043616", + "label": "BiologicalProcess", + "name": "keratinocyte proliferation" + }, + { + "id": "MESH:D057705", + "label": "BiologicalProcess", + "name": "Transendothelial Migration Pathway" + }, + { + "id": "GO:0006954", + "label": "BiologicalProcess", + "name": "inflammatory response" + }, + { + "id": "MESH:D011565", + "label": "Disease", + "name": "Psoriasis" + } + ], + "reference": "https://www.hindawi.com/journals/mi/2018/3067126/ https://go.drugbank.com/drugs/DB00799#mechanism-of-action" + }, + { + "comments": "DrugBank has this drug modulating a human target/protein (https://go.drugbank.com/drugs/DB04930#mechanism-of-action) instead of the non-vertebrate proteome. Because humans (and other mammals) share similar ion channels this drug can have some toxic effects on the vertebrate host (e.g. https://pubmed.ncbi.nlm.nih.gov/11812616/)", + "directed": true, + "graph": { + "disease": "Infestation by Sarcoptes scabiei var hominis", + "disease_mesh": "MESH:D012532", + "drug": "permethrin", + "drug_mesh": "MESH:D026023", + "drugbank": "DB:DB04930" + }, + "links": [ + { + "key": "disrupts", + "source": "MESH:D026023", + "target": "UniProt:Q2VKV7" + }, + { + "key": "positively regulates", + "source": "UniProt:Q2VKV7", + "target": "GO:1902305" + }, + { + "key": "positively correlated with", + "source": "GO:1902305", + "target": "GO:0086009" + }, + { + "key": "occurs in", + "source": "GO:0086009", + "target": "MESH:D001369" + }, + { + "key": "in taxon", + "source": "MESH:D001369", + "target": "NCBITaxon:52283" + }, + { + "key": "causes", + "source": "NCBITaxon:52283", + "target": "MESH:D012532" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:D026023", + "label": "Drug", + "name": "permethrin" + }, + { + "id": "UniProt:Q2VKV7", + "label": "Protein", + "name": "Sodium channel protein" + }, + { + "id": "GO:1902305", + "label": "BiologicalProcess", + "name": "regulation of sodium ion transmembrane transport" + }, + { + "id": "GO:0086009", + "label": "BiologicalProcess", + "name": "membrane repolarization" + }, + { + "id": "MESH:D001369", + "label": "Cell", + "name": "Axons" + }, + { + "id": "NCBITaxon:52283", + "label": "OrganismTaxon", + "name": "Sarcoptes scabiei" + }, + { + "id": "MESH:D012532", + "label": "Disease", + "name": "Infestation by Sarcoptes scabiei var hominis" + } + ], + "reference": "https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL1525/ https://dailymed.nlm.nih.gov/dailymed/lookup.cfm?setid=4de55a80-67d6-42c0-a6fc-57b89400c5b3 https://www.ebi.ac.uk/chembl/target_report_card/CHEMBL2362985/ https://beta.targetvalidation.org/drug/CHEMBL1525 https://en.wikipedia.org/wiki/Permethrin#Pharmacokinetics https://en.wikipedia.org/wiki/Pyrethroid#Mode_of_action" + }, + { + "comments": "this drug may bind to calmodulin therefore having an anti-neoplasmic effect (https://pubmed.ncbi.nlm.nih.gov/28062709/). For schizophrenia, the dopamine neurons are located in the mesolimbic dopaminergic system (BTO:0005591), which is a component pathway of the medial forebrain bundle (UBERON:0001910. See https://en.wikipedia.org/wiki/Medial_forebrain_bundle#Anatomy)", + "directed": true, + "graph": { + "disease": "Schizophrenia", + "disease_mesh": "MESH:D012559", + "drug": "perphenazine", + "drug_mesh": "MESH:D010546", + "drugbank": "DB:DB00850" + }, + "links": [ + { + "key": "decreases activity of", + "source": "MESH:D010546", + "target": "UniProt:P14416" + }, + { + "key": "decreases activity of", + "source": "MESH:D010546", + "target": "UniProt:P21728" + }, + { + "key": "positively regulates", + "source": "UniProt:P14416", + "target": "GO:0014046" + }, + { + "key": "positively regulates", + "source": "UniProt:P21728", + "target": "GO:0014046" + }, + { + "key": "increases abundance of", + "source": "GO:0014046", + "target": "CHEBI:18243" + }, + { + "key": "located in", + "source": "CHEBI:18243", + "target": "UBERON:0001910" + }, + { + "key": "positively correlated with", + "source": "UBERON:0001910", + "target": "MESH:D012559" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:D010546", + "label": "Drug", + "name": "perphenazine" + }, + { + "id": "UniProt:P14416", + "label": "Protein", + "name": "D(2) dopamine receptor" + }, + { + "id": "UniProt:P21728", + "label": "Protein", + "name": "D(1A) dopamine receptor" + }, + { + "id": "GO:0014046", + "label": "BiologicalProcess", + "name": "dopamine secretion" + }, + { + "id": "CHEBI:18243", + "label": "ChemicalSubstance", + "name": "dopamine" + }, + { + "id": "UBERON:0001910", + "label": "GrossAnatomicalStructure", + "name": "medial forebrain bundle" + }, + { + "id": "MESH:D012559", + "label": "Disease", + "name": "Schizophrenia" + } + ], + "reference": "https://go.drugbank.com/drugs/DB00850#mechanism-of-action https://en.wikipedia.org/wiki/Perphenazine https://en.wikipedia.org/wiki/Antipsychotic#Mechanism_of_action https://en.wikipedia.org/wiki/Mesolimbic_pathway#Relation_to_neurological_and_psychological_disorders" + }, + { + "directed": true, + "graph": { + "disease": "Impotence", + "disease_mesh": "MESH:D007172", + "drug": "avanafil", + "drug_mesh": "MESH:C553414", + "drugbank": "DB:DB06237" + }, + "links": [ + { + "key": "decreases activity of", + "source": "MESH:C553414", + "target": "UniProt:O76074" + }, + { + "key": "increases abundance of", + "source": "UniProt:O76074", + "target": "MESH:D006152" + }, + { + "key": "causes", + "source": "MESH:D006152", + "target": "GO:0044557" + }, + { + "key": "positively regulates", + "source": "GO:0044557", + "target": "GO:0008015" + }, + { + "key": "located in", + "source": "GO:0008015", + "target": "UBERON:0004713" + }, + { + "key": "participates in", + "source": "UBERON:0004713", + "target": "MESH:D007172" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C553414", + "label": "Drug", + "name": "avanafil" + }, + { + "id": "UniProt:O76074", + "label": "Protein", + "name": "cGMP-specific 3',5'-cyclic phosphodiesterase" + }, + { + "id": "MESH:D006152", + "label": "ChemicalSubstance", + "name": "cGMP" + }, + { + "id": "GO:0044557", + "label": "BiologicalProcess", + "name": "smooth muscle relaxation" + }, + { + "id": "GO:0008015", + "label": "BiologicalProcess", + "name": "blood flow" + }, + { + "id": "UBERON:0004713", + "label": "GrossAnatomicalStructure", + "name": "Corpus cavernosum penis" + }, + { + "id": "MESH:D007172", + "label": "Disease", + "name": "Impotence" + } + ], + "reference": "https://go.drugbank.com/drugs/DB06237#mechanismofaction" + }, + { + "directed": true, + "graph": { + "disease": "Gingivitis", + "disease_mesh": "MESH:D005891", + "drug": "chlorhexidine", + "drug_mesh": "MESH:D002710", + "drugbank": "DB:DB00878" + }, + "links": [ + { + "key": "disrupts", + "source": "MESH:D002710", + "target": "GO:0005886" + }, + { + "key": "causes", + "source": "GO:0005886", + "target": "GO:0008219" + }, + { + "key": "in taxon", + "source": "GO:0008219", + "target": "NCBITaxon:2" + }, + { + "key": "causes", + "source": "NCBITaxon:2", + "target": "MESH:D005891" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:D002710", + "label": "Drug", + "name": "chlorhexidine" + }, + { + "id": "GO:0005886", + "label": "CellularComponent", + "name": "cell membrane" + }, + { + "id": "GO:0008219", + "label": "BiologicalProcess", + "name": "cell death" + }, + { + "id": "NCBITaxon:2", + "label": "OrganismTaxon", + "name": "bacteria" + }, + { + "id": "MESH:D005891", + "label": "Disease", + "name": "Gingivitis" + } + ], + "reference": "https://go.drugbank.com/drugs/DB00878#mechanismofaction" + }, + { + "directed": true, + "graph": { + "disease": "Asthma-chronic obstructive pulmonary disease overlap syndrome", + "disease_mesh": "MESH:D000080445", + "drug": "diprophylline", + "drug_mesh": "MESH:D004400", + "drugbank": "DB:DB00651" + }, + "links": [ + { + "key": "decreases activity of", + "source": "MESH:D004400", + "target": "InterPro:IPR043371" + }, + { + "key": "increases abundance of", + "source": "InterPro:IPR043371", + "target": "MESH:D000242" + }, + { + "key": "causes", + 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"id": "MESH:D003248", + "id": "NCBITaxon:36087", + "label": "OrganismTaxon", + "name": "Ascaris lumbricoides" + }, + { + "id": "MESH:D001196", "label": "Disease", - "name": "Constipation" + "name": "Ascariasis" } ], - "reference": "https://go.drugbank.com/drugs/DB02659 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015201/" + "reference": "https://go.drugbank.com/drugs/DB00848#BE0003585" }, { + "comment": "Withdrawn", "directed": true, "graph": { - "disease": "Cerebrotendinous Xanthomatosis", - "disease_mesh": "MESH:D019294", - "drug": "cholic acid", - "drug_mesh": "MESH:D019826", - "drugbank": "DB:DB02659" + "disease": "Ancylostomiasis", + "disease_mesh": "MESH:D000724", + "drug": "levamisole", + "drug_mesh": "MESH:D007978", + "drugbank": "DB:DB00848" }, "links": [ { - "key": "produced by", - "source": "MESH:D019826", - "target": "GO:0047749" + "key": "increases activity of", + "source": "MESH:D007978", + "target": "UniProt:F1L348" + }, + { + "key": "increases activity of", + "source": 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"abiraterone acetate" + "key": "decreases activity of", + "source": "MESH:D053590", + "target": "UniProt:P14778" }, { - "id": "UniProt:P15538", - "label": "Protein", - "name": "Cytochrome P450 11B1, mitochondrial" + "key": "participates in", + "source": "UniProt:P14778", + "target": "GO:0004908" }, { - "id": "UniProt:P08686", - "label": "Protein", - "name": "Steroid 21-hydroxylase" + "key": "positively regulates", + "source": "GO:0004908", + "target": "GO:0006954" }, { - "id": "UniProt:P05177", - "label": "Protein", - "name": "Cytochrome P450 1A2" - }, + "key": "causes", + "source": "GO:0006954", + "target": "MESH:D056587" + } + ], + "multigraph": true, + "nodes": [ { - "id": "UniProt:P11712", - "label": "Protein", - "name": "Cytochrome P450 2C9" + "id": "MESH:D053590", + "label": "Drug", + "name": "Anakinra" }, { - "id": "UniProt:P08684", + "id": "UniProt:P14778", "label": "Protein", - "name": "Cytochrome P450 3A4" + "name": "Interleukin-1 receptor type 1" }, { - "id": "GO:0008203", - "label": "BiologicalProcess", - "name": "cholesterol metabolic process" + "id": "GO:0004908", + "label": "MolecularActivity", + "name": "Interleukin-1 receptor activity" }, { - "id": "GO:0061370", + "id": "GO:0006954", "label": "BiologicalProcess", - "name": "testosterone biosynthetic process" - }, - { - "id": "HP:0030088", - "label": "PhenotypicFeature", - "name": "Increased serum testosterone level" + "name": "Inflammation" }, { - "id": "MESH:D011471", + "id": "MESH:D056587", "label": "Disease", - "name": "Malignant tumor of prostate" + "name": "Cryopyrin associated periodic syndrome" } ], - "reference": "https://en.wikipedia.org/wiki/Abiraterone_acetate#Pharmacology https://www.kegg.jp/entry/D09701 https://en.wikipedia.org/wiki/21-Hydroxylase#Function" + "reference": "https://go.drugbank.com/drugs/DB00026#BE0000565 https://en.wikipedia.org/wiki/Cryopyrin-associated_periodic_syndrome" }, { - "comments": "In addition to inhibiting UniProt:P05093 (the main target according to https://go.drugbank.com/drugs/DB05812#mechanism-of-action), abiraterone also inhibits all these cytochrome P450s and can be useful in treating castration-resistant prostate cancers.", "directed": true, "graph": { - "disease": "Malignant tumor of prostate", - "disease_mesh": "MESH:D011471", - "drug": "abiraterone acetate", - "drug_mesh": "MESH:D000069501,MESH:C089740", - "drugbank": "DB:DB05812" + "disease": "Rheumatoid arthritis", + "disease_mesh": "MESH:D001172", + "drug": "infliximab", + "drug_mesh": "MESH:D000069285", + "drugbank": "DB:DB00065" }, "links": [ { "key": "decreases activity of", - "source": "DB:DB05812", - "target": "UniProt:P15538" + "source": "MESH:D000069285", + "target": "UniProt:P01375" }, { - "key": "decreases activity of", - "source": "DB:DB05812", - "target": "UniProt:P08686" + "key": "positively regulates", + "source": "UniProt:P01375", + "target": "REACT:R-HSA-75893" }, { - "key": "decreases activity of", - "source": "DB:DB05812", - "target": "UniProt:P05177" + "key": "positively regulates", + "source": "REACT:R-HSA-75893", + "target": "GO:0006954" }, { - "key": "decreases activity of", - "source": "DB:DB05812", - "target": "UniProt:P11712" - }, + "key": "causes", + "source": "GO:0006954", + "target": "MESH:D001172" + } + ], + "multigraph": true, + "nodes": [ { - "key": "decreases activity of", - "source": "DB:DB05812", - "target": "UniProt:P08684" + "id": "MESH:D000069285", + "label": "Drug", + "name": "Infliximab" }, { - "key": "positively regulates", - "source": "UniProt:P15538", - "target": "GO:0006704" + "id": "UniProt:P01375", + "label": "Protein", + "name": "Tumor necrosis factor" }, { - "key": "positively regulates", - "source": "UniProt:P08686", - "target": "GO:0006704" + "id": "REACT:R-HSA-75893", + "label": "Pathway", + "name": "TNF signaling" }, { - "key": "positively regulates", - "source": "UniProt:P05177", - "target": "GO:0006704" + "id": "GO:0006954", + "label": "BiologicalProcess", + "name": "Inflammation" }, { - "key": "positively regulates", - "source": "UniProt:P11712", - "target": "GO:0006704" - }, + "id": "MESH:D001172", + "label": "Disease", + "name": "Rheumatoid arthritis" + } + ], + "reference": "https://go.drugbank.com/drugs/DB00065#BE0000704" + }, + { + "directed": true, + "graph": { + "disease": "Ulcerative colitis", + "disease_mesh": "MESH:D003093", + "drug": "infliximab", + "drug_mesh": "MESH:D000069285", + "drugbank": "DB:DB00065" + }, + "links": [ { - "key": "positively regulates", - "source": "UniProt:P08684", - "target": "GO:0006704" + "key": "decreases activity of", + "source": "MESH:D000069285", + "target": "UniProt:P01375" }, { - "key": "positively correlated with", - "source": "GO:0006704", - "target": "GO:0061370" + "key": "positively regulates", + "source": "UniProt:P01375", + "target": "REACT:R-HSA-75893" }, { - "key": "positively correlated with", - "source": "GO:0061370", - "target": "HP:0030088" + "key": "positively regulates", + "source": "REACT:R-HSA-75893", + "target": "GO:0006954" }, { - "key": "positively correlated with", - "source": "HP:0030088", - "target": "MESH:D011471" + "key": "causes", + "source": "GO:0006954", + "target": "MESH:D003093" } ], "multigraph": true, "nodes": [ { - "id": "DB:DB05812", + "id": "MESH:D000069285", "label": "Drug", - "name": "abiraterone acetate" + "name": "Infliximab" }, { - "id": "UniProt:P15538", + "id": "UniProt:P01375", "label": "Protein", - "name": "Cytochrome P450 11B1, mitochondrial" + "name": "Tumor necrosis factor" }, { - "id": "UniProt:P08686", - "label": "Protein", - "name": "Steroid 21-hydroxylase" + "id": "REACT:R-HSA-75893", + "label": "Pathway", + "name": "TNF signaling" }, { - "id": "UniProt:P05177", - "label": "Protein", - "name": "Cytochrome P450 1A2" + "id": "GO:0006954", + "label": "BiologicalProcess", + "name": "Inflammation" }, { - "id": "UniProt:P11712", - "label": "Protein", - "name": "Cytochrome P450 2C9" + "id": "MESH:D003093", + "label": "Disease", + "name": "Ulcerative colitis" + } + ], + "reference": "https://go.drugbank.com/drugs/DB00065#BE0000704" + }, + { + "directed": true, + "graph": { + "disease": "Crohn's disease", + "disease_mesh": "MESH:D003424", + "drug": "infliximab", + "drug_mesh": "MESH:D000069285", + "drugbank": "DB:DB00065" + }, + "links": [ + { + "key": "decreases activity of", + "source": "MESH:D000069285", + "target": "UniProt:P01375" }, { - "id": "UniProt:P08684", - "label": "Protein", - "name": "Cytochrome P450 3A4" + "key": "positively regulates", + "source": "UniProt:P01375", + "target": "REACT:R-HSA-75893" }, { - "id": "GO:0006704", - "label": "BiologicalProcess", - "name": "glucocorticoid biosynthetic process" + "key": "positively regulates", + "source": "REACT:R-HSA-75893", + "target": "GO:0006954" }, { - "id": "GO:0061370", - "label": "BiologicalProcess", - "name": "testosterone biosynthetic process" + "key": "causes", + "source": "GO:0006954", + "target": "MESH:D003424" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:D000069285", + "label": "Drug", + "name": "Infliximab" }, { - "id": "HP:0030088", - "label": "PhenotypicFeature", - "name": "Increased serum testosterone level" + "id": "UniProt:P01375", + "label": "Protein", + "name": "Tumor necrosis factor" }, { - "id": "MESH:D011471", + "id": "REACT:R-HSA-75893", + "label": "Pathway", + "name": "TNF signaling" + }, + { + "id": "GO:0006954", + "label": "BiologicalProcess", + "name": "Inflammation" + }, + { + "id": "MESH:D003424", "label": "Disease", - "name": "Malignant tumor of prostate" + "name": "Crohn's disease" } ], - "reference": "https://en.wikipedia.org/wiki/Abiraterone_acetate#Pharmacology https://www.kegg.jp/entry/D09701 https://en.wikipedia.org/wiki/21-Hydroxylase#Function" + "reference": "https://go.drugbank.com/drugs/DB00065#BE0000704" }, { - "comments": "In addition to inhibiting UniProt:P05093 (the main target according to https://go.drugbank.com/drugs/DB05812#mechanism-of-action), abiraterone also acts as a partial antagonist of the androgen receptor (UniProt:P10275)", "directed": true, "graph": { - "disease": "Malignant tumor of prostate", - "disease_mesh": "MESH:D011471", - "drug": "abiraterone acetate", - "drug_mesh": "MESH:D000069501,MESH:C089740", - "drugbank": "DB:DB05812" + "disease": "Ankylosing spondylitis", + "disease_mesh": "MESH:D013167", + "drug": "infliximab", + "drug_mesh": "MESH:D000069285", + "drugbank": "DB:DB00065" }, "links": [ { "key": "decreases activity of", - "source": "DB:DB05812", - "target": "UniProt:P10275" + "source": "MESH:D000069285", + "target": "UniProt:P01375" }, { "key": "positively regulates", - "source": "UniProt:P10275", - "target": "GO:0060769" + "source": "UniProt:P01375", + "target": "REACT:R-HSA-75893" }, { - "key": "positively correlated with", - "source": "GO:0060769", - "target": "MESH:D011471" + "key": "positively regulates", + "source": "REACT:R-HSA-75893", + "target": "GO:0006954" + }, + { + "key": "causes", + "source": "GO:0006954", + "target": "MESH:D013167" } ], "multigraph": true, "nodes": [ { - "id": "DB:DB05812", + "id": "MESH:D000069285", "label": "Drug", - "name": "abiraterone acetate" + "name": "Infliximab" }, { - "id": "UniProt:P10275", + "id": "UniProt:P01375", "label": "Protein", - "name": "Androgen receptor" + "name": "Tumor necrosis factor" }, { - "id": "GO:0060769", + "id": "REACT:R-HSA-75893", + "label": "Pathway", + "name": "TNF signaling" + }, + { + "id": "GO:0006954", "label": "BiologicalProcess", - "name": "positive regulation of epithelial cell proliferation involved in prostate gland development" + "name": "Inflammation" }, { - "id": "MESH:D011471", + "id": "MESH:D013167", "label": "Disease", - "name": "Malignant tumor of prostate" + "name": "Ankylosing spondylitis" } ], - "reference": "https://en.wikipedia.org/wiki/Abiraterone_acetate#Pharmacology https://en.wikipedia.org/wiki/Androgen_receptor#Mechanism_of_action https://en.wikipedia.org/wiki/Androgen_deprivation_therapy#Methods_based_on_drugs https://www.kegg.jp/entry/D09701" + "reference": "https://go.drugbank.com/drugs/DB00065#BE0000704" }, { - "comments": "DrugBank has this drug as a beta 1 antagonist but data elsewhere does not seem to support the anatagonism role (e.g. https://www.drugs.com/pro/terbutaline.html#s-34090-1, https://www.ebi.ac.uk/chembldb/index.php/compound/inspect/CHEMBL1760 https://www.genome.jp/dbget-bin/www_bget?cpd:C07129)", "directed": true, "graph": { - "disease": "Tear film insufficiency", - "disease_mesh": "MESH:D015352", - "drug": "terbutaline", - "drug_mesh": "MESH:D013726", - "drugbank": "DB:DB00871" + "disease": "Psoriatic Arthritis", + "disease_mesh": "MESH:D015535", + "drug": "infliximab", + "drug_mesh": "MESH:D000069285", + "drugbank": "DB:DB00065" }, "links": [ { - "key": "positively regulates", - "source": "MESH:D013726", - "target": "UniProt:P13945" + "key": "decreases activity of", + "source": "MESH:D000069285", + "target": "UniProt:P01375" }, { "key": "positively regulates", - "source": "MESH:D013726", - "target": "UniProt:P07550" - }, - { - "key": "positively correlated with", - "source": "UniProt:P13945", - "target": "GO:0050728" + "source": "UniProt:P01375", + "target": "REACT:R-HSA-75893" }, { - "key": "positively correlated with", - "source": "UniProt:P07550", - "target": "GO:0050728" + "key": "positively regulates", + "source": "REACT:R-HSA-75893", + "target": "GO:0006954" }, { - "key": "negatively correlated with", - "source": "GO:0050728", - "target": "MESH:D015352" + "key": "causes", + "source": "GO:0006954", + "target": "MESH:D015535" } ], "multigraph": true, "nodes": [ { - "id": "MESH:D013726", + "id": "MESH:D000069285", "label": "Drug", - "name": "terbutaline" + "name": "Infliximab" }, { - "id": "UniProt:P13945", + "id": "UniProt:P01375", "label": "Protein", - "name": "Beta-3 adrenergic receptor" + "name": "Tumor necrosis factor" }, { - "id": "UniProt:P07550", - "label": "Protein", - "name": "Beta-2 adrenergic receptor" + "id": "REACT:R-HSA-75893", + "label": "Pathway", + "name": "TNF signaling" }, { - "id": "GO:0050728", + "id": "GO:0006954", "label": "BiologicalProcess", - "name": "negative regulation of inflammatory response" + "name": "Inflammation" }, { - "id": "MESH:D015352", + "id": "MESH:D015535", "label": "Disease", - "name": "Tear film insufficiency" + "name": "Psoriatic Arthritis" } ], - "reference": "https://go.drugbank.com/drugs/DB00871#mechanism-of-action https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345890/ https://europepmc.org/article/MED/23360156" + "reference": "https://go.drugbank.com/drugs/DB00065#BE0000704" }, { + "comment": "Methacarbamol is a skeletal muscle relaxant with an unknown mechanism of action", "directed": true, "graph": { - "disease": "Malignant tumor of prostate", - "disease_mesh": "MESH:D011471", - "drug": "abiraterone acetate", - "drug_mesh": "MESH:D000069501,MESH:C089740", - "drugbank": "DB:DB05812" + "disease": "Spasticity", + "disease_mesh": "MESH:D009128", + "drug": "methocarbamol", + "drug_mesh": "MESH:D008721", + "drugbank": "DB:DB00423" }, "links": [ { - "key": "derives into", - "source": "DB:DB05812", - "target": "MESH:C000600172" - }, - { - "key": "negatively regulates", - "source": "MESH:C000600172", - "target": "UniProt:P05093" - }, - { - "key": "negatively regulates", - "source": "MESH:C000600172", - "target": "UniProt:P26439" - }, - { - "key": "negatively regulates", - "source": "MESH:C000600172", - "target": "UniProt:P14060" + "key": "causes", + "source": "MESH:D008721", + "target": "GO:0090075" }, { - "key": "positively regulates", - "source": "UniProt:P05093", - "target": "GO:0006702" - }, + "key": "negatively correlated with", + "source": "GO:0090075", + "target": "MESH:D009128" + } + ], + "multigraph": true, + "nodes": [ { - "key": "positively regulates", - "source": "UniProt:P26439", - "target": "GO:0006702" + "id": "MESH:D008721", + "label": "Drug", + "name": "Methacarbamol" }, { - "key": "positively regulates", - "source": "UniProt:P14060", - "target": "GO:0006702" + "id": "GO:0090075", + "label": "BiologicalProcess", + "name": "Relaxation of muscle" }, { - "key": "positively regulates", - "source": "UniProt:P05093", - "target": "GO:0006704" - }, + "id": "MESH:D009128", + "label": "Disease", + "name": "Spasticity" + } + ], + "reference": "https://go.drugbank.com/drugs/DB00423" + }, + { + "directed": true, + "graph": { + "disease": "Urge Incontinence", + "disease_mesh": "MESH:D053202", + "drug": "Darifenacin", + "drug_mesh": "MESH:C101207", + "drugbank": "DB:DB00496" + }, + "links": [ { - "key": "positively regulates", - "source": "UniProt:P26439", - "target": "GO:0006704" + "key": "decreases activity of", + "source": "MESH:C101207", + "target": "UniProt:P20309" }, { "key": "positively regulates", - "source": "UniProt:P14060", - "target": "GO:0006704" - }, - { - "key": "positively correlated with", - "source": "GO:0006704", - "target": "HP:0030088" + "source": "UniProt:P20309", + "target": "GO:0014832" }, { - "key": "positively correlated with", - "source": "GO:0006702", - "target": "HP:0030088" + "key": "positively regulates", + "source": "GO:0014832", + "target": "GO:0060073" }, { "key": "positively correlated with", - "source": "HP:0030088", - "target": "MESH:D011471" + "source": "GO:0060073", + "target": "MESH:D053202" } ], "multigraph": true, "nodes": [ { - "id": "DB:DB05812", - "label": "Drug", - "name": "abiraterone acetate" - }, - { - "id": "MESH:C000600172", + "id": "MESH:C101207", "label": "Drug", - "name": "delta4-abiraterone" - }, - { - "id": "UniProt:P05093", - "label": "Protein", - "name": "Steroid 17-alpha-hydroxylase/17,20 lyase" - }, - { - "id": "UniProt:P26439", - "label": "Protein", - "name": "3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2" + "name": "Darifenacin" }, { - "id": "UniProt:P14060", + "id": "UniProt:P20309", "label": "Protein", - "name": "3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1" + "name": "Muscarinic acetylcholine receptor M3" }, { - "id": "GO:0006702", + "id": "GO:0014832", "label": "BiologicalProcess", - "name": "androgen biosynthetic process" + "name": "Urinary bladder smooth muscle contraction" }, { - "id": "GO:0006704", + "id": "GO:0060073", "label": "BiologicalProcess", - "name": "glucocorticoid biosynthetic process" + "name": "Urination" }, { - "id": "HP:0030088", - "label": "PhenotypicFeature", - "name": "Increased serum testosterone level" - }, - { - "id": "MESH:D011471", + "id": "MESH:D053202", "label": "Disease", - "name": "Malignant tumor of prostate" + "name": "Urge Incontinence" } ], - "reference": "https://en.wikipedia.org/wiki/Abiraterone_acetate#Pharmacology https://en.wikipedia.org/wiki/%CE%944-Abiraterone https://www.nature.com/articles/nrurol.2016.101 https://www.medchemexpress.com/D4-abiraterone.html" + "reference": "https://go.drugbank.com/drugs/DB00496 https://en.wikipedia.org/wiki/Urinary_incontinence" }, { "directed": true, "graph": { - "disease": "Malignant tumor of 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"Cytochrome P450 3A4" + "name": "Annexin A1" }, { - "id": "GO:0008203", - "label": "BiologicalProcess", - "name": "cholesterol metabolic process" + "id": "REACT:R-HSA-2162123", + "label": "Pathway", + "name": "Prostaglandin Synthesis" }, { - "id": "GO:0061370", + "id": "GO:0006954", "label": "BiologicalProcess", - "name": "testosterone biosynthetic process" - }, - { - "id": "HP:0030088", - "label": "PhenotypicFeature", - "name": "Increased serum testosterone level" + "name": "Inflammation" }, { - "id": "MESH:D011471", + "id": "MESH:D012628", "label": "Disease", - "name": "Malignant tumor of prostate" + "name": "Seborrheic dermatitis" } ], - "reference": "https://en.wikipedia.org/wiki/Abiraterone_acetate#Pharmacology https://www.kegg.jp/entry/D09701 https://en.wikipedia.org/wiki/21-Hydroxylase#Function" + "reference": "https://go.drugbank.com/drugs/DB00547#BE0000794 https://en.wikipedia.org/wiki/Seborrhoeic_dermatitis" }, { - "comments": "In addition to inhibiting UniProt:P05093 (the main target according to https://go.drugbank.com/drugs/DB05812#mechanism-of-action), abiraterone also inhibits all these cytochrome P450s and can be useful in treating castration-resistant prostate cancers.", "directed": true, "graph": { - "disease": "Malignant tumor of prostate", - "disease_mesh": "MESH:D011471", - "drug": "abiraterone acetate", - "drug_mesh": "MESH:D000069501,MESH:C089740", - "drugbank": "DB:DB05812" + "disease": "Migraine", + "disease_mesh": "MESH:D008881", + "drug": "almotriptan", + "drug_mesh": "MESH:C409045", + "drugbank": "DB:DB00918" }, "links": [ { - "key": "decreases activity of", - "source": "DB:DB05812", - "target": "UniProt:P15538" - }, - { - "key": "decreases activity of", - "source": "DB:DB05812", - "target": "UniProt:P08686" + "key": "increases activity of", + "source": "MESH:C409045", + "target": "UniProt:P28222" }, { - "key": "decreases activity of", - "source": "DB:DB05812", - "target": "UniProt:P05177" + "key": "increases activity of", + "source": 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"source": "UniProt:P11712", - "target": "GO:0006704" + "key": "positively correlated with", + "source": "MESH:D020078", + "target": "MESH:D008881" }, { - "key": "positively regulates", - "source": "UniProt:P08684", - "target": "GO:0006704" + "key": "decreases activity of", + "source": "UniProt:P28222", + "target": "UBERON:0001645" }, { - "key": "positively correlated with", - "source": "GO:0006704", - "target": "GO:0061370" + "key": "decreases activity of", + "source": "UniProt:P28221", + "target": "UBERON:0001645" }, { - "key": "positively correlated with", - "source": "GO:0061370", - "target": "HP:0030088" + "key": "participates in", + "source": "UBERON:0001645", + "target": "GO:0019233" }, { "key": "positively correlated with", - "source": "HP:0030088", - "target": "MESH:D011471" + "source": "GO:0019233", + "target": "MESH:D008881" } ], "multigraph": true, "nodes": [ { - "id": "DB:DB05812", + "id": "MESH:C409045", "label": "Drug", - "name": "abiraterone acetate" - }, - { - "id": "UniProt:P15538", - "label": "Protein", - "name": "Cytochrome P450 11B1, mitochondrial" + "name": "Almotriptan" }, { - "id": "UniProt:P08686", + "id": "UniProt:P28222", "label": "Protein", - "name": "Steroid 21-hydroxylase" + "name": "5-hydroxytryptamine receptor 1B" }, { - "id": "UniProt:P05177", + "id": "UniProt:P28221", "label": "Protein", - "name": "Cytochrome P450 1A2" + "name": "5-hydroxytryptamine receptor 1D" }, { - "id": "UniProt:P11712", - "label": "Protein", - "name": "Cytochrome P450 2C9" + "id": "GO:0042310", + "label": "BiologicalProcess", + "name": "Vasoconstriction" }, { - "id": "UniProt:P08684", - "label": "Protein", - "name": "Cytochrome P450 3A4" + "id": "MESH:D020078", + "label": "Disease", + "name": "Neurogenic Inflammation" }, { - "id": "GO:0006704", - "label": "BiologicalProcess", - "name": "glucocorticoid biosynthetic process" + "id": "UBERON:0001645", + "label": "GrossAnatomicalStructure", + "name": "Trigeminal nerve" }, { - "id": "GO:0061370", + "id": "GO:0019233", "label": "BiologicalProcess", - "name": "testosterone biosynthetic process" + "name": "Sensory perception of pain" }, { - "id": "HP:0030088", - "label": "PhenotypicFeature", - "name": "Increased serum testosterone level" + "id": "MESH:D010146", + "label": "Disease", + "name": "Pain" }, { - "id": "MESH:D011471", + "id": "MESH:D008881", "label": "Disease", - "name": "Malignant tumor of prostate" + "name": "Migraine" } ], - "reference": "https://en.wikipedia.org/wiki/Abiraterone_acetate#Pharmacology https://www.kegg.jp/entry/D09701 https://en.wikipedia.org/wiki/21-Hydroxylase#Function" + "reference": "https://go.drugbank.com/drugs/DB00918 https://pubmed.ncbi.nlm.nih.gov/16099727/ https://pubmed.ncbi.nlm.nih.gov/27312704/" }, { - "comments": "In addition to inhibiting UniProt:P05093 (the main target according to https://go.drugbank.com/drugs/DB05812#mechanism-of-action), abiraterone also acts as a partial antagonist of the androgen receptor (UniProt:P10275)", "directed": true, "graph": { - "disease": "Malignant tumor of prostate", - "disease_mesh": "MESH:D011471", - "drug": "abiraterone acetate", - "drug_mesh": "MESH:D000069501,MESH:C089740", - "drugbank": "DB:DB05812" + "disease": "Onychomycosis due to dermatophyte", + "disease_mesh": "MESH:D014009", + "drug": "tavaborole", + "drug_mesh": "MESH:C512998", + "drugbank": "DB:DB09041" }, "links": [ { "key": "decreases activity of", - "source": "DB:DB05812", - "target": "UniProt:P10275" + "source": "MESH:C512998", + "target": "UniProt:Q9HGT2" }, { "key": "positively regulates", - "source": "UniProt:P10275", - "target": "GO:0060769" + "source": "UniProt:Q9HGT2", + "target": "GO:0006412" }, { - "key": "positively correlated with", - "source": "GO:0060769", - "target": "MESH:D011471" + "key": "occurs in", + "source": "GO:0006412", + "target": "NCBITaxon:5551" + }, + { + "key": "causes", + "source": "NCBITaxon:5551", + "target": "MESH:D014009" } ], "multigraph": true, "nodes": [ { - "id": "DB:DB05812", + "id": "MESH:C512998", "label": "Drug", - "name": "abiraterone acetate" + "name": "Tavaborole" }, { - "id": "UniProt:P10275", + "id": "UniProt:Q9HGT2", "label": "Protein", - "name": "Androgen receptor" + "name": "Cytosolic leucyl-tRNA synthetase" }, { - "id": "GO:0060769", + "id": "GO:0006412", "label": "BiologicalProcess", - "name": "positive regulation of epithelial cell proliferation involved in prostate gland development" + "name": "Protein biosynthesis" }, { - "id": "MESH:D011471", + "id": "NCBITaxon:5551", + "label": "OrganismTaxon", + "name": "Trichophyton rubrum" + }, + { + "id": "MESH:D014009", "label": "Disease", - "name": "Malignant tumor of prostate" + "name": "Onychomycosis due to dermatophyte" } ], - "reference": "https://en.wikipedia.org/wiki/Abiraterone_acetate#Pharmacology https://en.wikipedia.org/wiki/Androgen_receptor#Mechanism_of_action https://en.wikipedia.org/wiki/Androgen_deprivation_therapy#Methods_based_on_drugs https://www.kegg.jp/entry/D09701" + "reference": "https://go.drugbank.com/drugs/DB09041#BE0002395 https://en.wikipedia.org/wiki/Onychomycosis" }, { - "comments": "DrugBank has this drug as a beta 1 antagonist but data elsewhere does not seem to support the anatagonism role (e.g. https://www.drugs.com/pro/terbutaline.html#s-34090-1, https://www.ebi.ac.uk/chembldb/index.php/compound/inspect/CHEMBL1760 https://www.genome.jp/dbget-bin/www_bget?cpd:C07129)", "directed": true, "graph": { - "disease": "Tear film insufficiency", - "disease_mesh": "MESH:D015352", - "drug": "terbutaline", - "drug_mesh": "MESH:D013726", - "drugbank": "DB:DB00871" + "disease": "Ventricular premature beats", + "disease_mesh": "MESH:D018879", + "drug": "Acebutolol", + "drug_mesh": "MESH:D000070", + "drugbank": "DB:DB01193" }, "links": [ { - "key": "positively regulates", - "source": "MESH:D013726", - "target": "UniProt:P13945" + "key": "decreases activity of", + "source": "MESH:D000070", + "target": "UniProt:P08588" }, { - "key": "positively regulates", - "source": "MESH:D013726", - "target": "UniProt:P07550" + "key": "negatively regulates", + "source": "UniProt:P08588", + "target": "HP:0001649" }, { - "key": "positively correlated with", - "source": "UniProt:P13945", - "target": "GO:0050728" + "key": "decreases activity of", + "source": "HP:0001649", + "target": "UniProt:P08588" }, { - "key": "positively correlated with", - "source": "UniProt:P07550", - "target": "GO:0050728" + "key": "negatively regulates", + "source": "UniProt:P08588", + "target": "HP:0000822" }, { - "key": "negatively correlated with", - "source": "GO:0050728", - "target": "MESH:D015352" + "key": "ameliorates", + "source": "HP:0001649", + "target": "MESH:D018879" + }, + { + "key": "ameliorates", + "source": "HP:0000822", + "target": "MESH:D018879" } ], "multigraph": true, "nodes": [ { - "id": "MESH:D013726", + "id": "MESH:D000070", "label": "Drug", - "name": "terbutaline" + "name": "Acebutolol" }, { - "id": "UniProt:P13945", + "id": "UniProt:P08588", "label": "Protein", - "name": "Beta-3 adrenergic receptor" + "name": "Beta-1 adrenergic receptor" }, { - "id": "UniProt:P07550", - "label": "Protein", - "name": "Beta-2 adrenergic receptor" + "id": "HP:0001649", + "label": "PhenotypicFeature", + "name": "heart rate" }, { - "id": "GO:0050728", - "label": "BiologicalProcess", - "name": "negative regulation of inflammatory response" + "id": "HP:0000822", + "label": "PhenotypicFeature", + "name": "blood pressure" }, { - "id": "MESH:D015352", + "id": "MESH:D018879", "label": "Disease", - "name": "Tear film insufficiency" + "name": "Ventricular premature beats" } ], - "reference": "https://go.drugbank.com/drugs/DB00871#mechanism-of-action https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345890/ https://europepmc.org/article/MED/23360156" + "reference": "https://go.drugbank.com/drugs/DB01193#mechanismofaction https://en.wikipedia.org/wiki/Acebutolol" }, { "directed": true, "graph": { - "disease": "Malignant tumor of prostate", - "disease_mesh": "MESH:D011471", - "drug": "abiraterone acetate", - "drug_mesh": "MESH:D000069501,MESH:C089740", - "drugbank": "DB:DB05812" + "disease": "Diabetes mellitus type 2", + "disease_mesh": "MESH:D003924", + "drug": "Acetohexamide", + "drug_mesh": "MESH:D000092", + "drugbank": "DB:DB00414" }, "links": [ { - "key": "derives into", - "source": "DB:DB05812", - "target": "MESH:C000600172" + "key": "increases activity of", + "source": "MESH:D000092", + "target": "CL:0000169" }, { - "key": "negatively regulates", - "source": "MESH:C000600172", - "target": "UniProt:P05093" + "key": "increases secretion of", + "source": "CL:0000169", + "target": "MESH:D007328" }, { "key": "negatively regulates", - "source": "MESH:C000600172", - "target": "UniProt:P26439" + "source": "MESH:D007328", + "target": "MESH:D001786" }, { - "key": "negatively regulates", - "source": "MESH:C000600172", - "target": "UniProt:P14060" + "key": "ameliorates", + "source": "MESH:D001786", + "target": "MESH:D003924" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:D000092", + "label": "Drug", + "name": "Acetohexamide" }, { - "key": "positively regulates", - "source": "UniProt:P05093", - "target": "GO:0006702" + "id": "CL:0000169", + "label": "Cell", + "name": "pancreatic beta cells" }, { - "key": "positively regulates", - "source": "UniProt:P26439", - "target": "GO:0006702" + "id": "MESH:D007328", + "label": "ChemicalSubstance", + "name": "insulin" }, { - "key": "positively regulates", - "source": "UniProt:P14060", - "target": "GO:0006702" + "id": "MESH:D001786", + "label": "ChemicalSubstance", + "name": "blood sugar" }, { - "key": "positively regulates", - "source": "UniProt:P05093", - "target": "GO:0006704" + "id": "MESH:D003924", + "label": "Disease", + "name": "Diabetes mellitus type 2" + } + ], + "reference": "https://go.drugbank.com/drugs/DB00414#mechanismofaction" + }, + { + "directed": true, + "graph": { + "disease": "Open-angle glaucoma", + "disease_mesh": "MESH:D005902", + "drug": "Apraclonidine", + "drug_mesh": "MESH:C016986", + "drugbank": "DB:DB00964" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C016986", + "target": "UniProt:P08913" }, { - "key": "positively regulates", - "source": "UniProt:P26439", - "target": "GO:0006704" + "key": "decreases synthesis of", + "source": "UniProt:P08913", + "target": "UBERON:0001796" + }, + { + "key": "negatively regulates", + "source": "UBERON:0001796", + "target": "HP:0007906" }, { "key": "positively regulates", - "source": "UniProt:P14060", - "target": "GO:0006704" + "source": "UniProt:P08913", + "target": "GO:0045907" }, { - "key": "positively correlated with", - "source": "GO:0006704", - "target": "HP:0030088" + "key": "positively regulates", + "source": "GO:0045907", + "target": "HP:0012630" }, { - "key": "positively correlated with", - "source": "GO:0006702", - "target": "HP:0030088" + "key": "negatively regulates", + "source": "HP:0012630", + "target": "HP:0007906" }, { - "key": "positively correlated with", - "source": "HP:0030088", - "target": "MESH:D011471" + "key": "ameliorates", + "source": "HP:0007906", + "target": "MESH:D005902" } ], "multigraph": true, "nodes": [ { - "id": "DB:DB05812", - "label": "Drug", - "name": "abiraterone acetate" - }, - { - "id": "MESH:C000600172", + "id": "MESH:C016986", "label": "Drug", - "name": "delta4-abiraterone" + "name": "Apraclonidine" }, { - "id": "UniProt:P05093", + "id": "UniProt:P08913", "label": "Protein", - "name": "Steroid 17-alpha-hydroxylase/17,20 lyase" + "name": "alpha2 adrenergic receptor" }, { - "id": "UniProt:P26439", - "label": "Protein", - "name": "3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2" + "id": "UBERON:0001796", + "label": "GrossAnatomicalStructure", + "name": "aqueous humor" }, { - "id": "UniProt:P14060", - "label": "Protein", - "name": "3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1" + "id": "HP:0007906", + "label": "PhenotypicFeature", + "name": 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"GO:0003072" }, { - "key": "positively correlated with", - "source": "UniProt:P25105", - "target": "GO:0043312" - }, - { - "key": "participates in", - "source": "GO:0043117", - "target": "GO:0006954" + "key": "negatively regulates", + "source": "GO:0003072", + "target": "HP:0000822" }, { - "key": "participates in", - "source": "GO:0043312", - "target": "GO:0006954" + "key": "negatively regulates", + "source": "HP:0000822", + "target": "HP:0007906" }, { - "key": "positively correlated with", - "source": "GO:0006954", - "target": "MESH:D065631" + "key": "correlated with", + "source": "HP:0007906", + "target": "MESH:D005902" } ], "multigraph": true, "nodes": [ { - "id": "MESH:C103639", + "id": "MESH:D003000", "label": "Drug", - "name": "rupatadine" - }, - { - "id": "UniProt:P35367", - "label": "Protein", - "name": "Histamine H1 receptor" + "name": "Clonidine" }, { - "id": "UniProt:P25105", + "id": "UniProt:P08913", "label": "Protein", - "name": "Platelet-activating factor receptor" + "name": "Alpha-2A adrenergic receptor" }, { - "id": "GO:0043117", + "id": "GO:0003072", "label": "BiologicalProcess", - "name": "positive regulation of vascular permeability" + "name": "peripheral vascular resistance" }, { - "id": "GO:0043312", - "label": "BiologicalProcess", - "name": "neutrophil degranulation" + "id": "HP:0000822", + "label": "PhenotypicFeature", + "name": "blood pressure" }, { - "id": "GO:0006954", - "label": "BiologicalProcess", - "name": "inflammatory response" + "id": "HP:0007906", + "label": "PhenotypicFeature", + "name": "intraocular pressure" }, { - "id": "MESH:D065631", + "id": "MESH:D005902", "label": "Disease", - "name": "Allergic rhinitis" + "name": "Open-angle glaucoma" } ], - "reference": "https://go.drugbank.com/drugs/DB11614#mechanism-of-action https://en.wikipedia.org/wiki/Rupatadine#Mechanism_of_action" + "reference": "https://go.drugbank.com/drugs/DB00575#mechanismofaction https://en.wikipedia.org/wiki/Clonidine https://pubchem.ncbi.nlm.nih.gov/compound/Clonidine" }, { "directed": true, "graph": { - "disease": "Urticaria", - "disease_mesh": "MESH:D014581", - "drug": "rupatadine", - "drug_mesh": "MESH:C103639", - "drugbank": "DB:DB11614" + "disease": "Hypokalemia", + "disease_mesh": "MESH:D007008", + "drug": "Calcium chloride", + "drug_mesh": "MESH:D002122", + "drugbank": "DB:DB01164" }, "links": [ { - "key": "decreases activity of", - "source": "MESH:C103639", - "target": "UniProt:P35367" - }, + "key": "treats", + "source": "MESH:D002122", + "target": "MESH:D007008" + } + ], + "multigraph": true, + "nodes": [ { - "key": "decreases activity of", - "source": "MESH:C103639", - "target": "UniProt:P25105" + "id": "MESH:D002122", + "label": "Drug", + "name": "Calcium chloride" }, { - "key": "positively correlated with", - "source": "UniProt:P35367", - "target": "GO:0043117" - }, + "id": "MESH:D007008", + "label": "Disease", + "name": "Hypokalemia" + } + ], + "reference": "https://go.drugbank.com/drugs/DB01164#mechanismofaction https://www.aafp.org/afp/2015/0915/p487.html https://en.wikipedia.org/wiki/Hyperkalemia#:~:text=Calcium%20(calcium%20chloride%20or%20calcium,is%20elevated%20abnormally%20in%20hyperkalemia https://pubchem.ncbi.nlm.nih.gov/compound/Calcium-dichloride#section=Pharmacology-and-Biochemistry" + }, + { + "directed": true, + "graph": { + "disease": "Hyperkalemia", + "disease_mesh": "MESH:D006947", + "drug": "Calcium chloride", + "drug_mesh": "MESH:D002122", + "drugbank": "DB:DB01164" + }, + "links": [ { - "key": "positively correlated with", - "source": "UniProt:P25105", - "target": "GO:0043312" + "key": "regulates", + "source": "MESH:D002122", + "target": "GO:0030322" }, { - "key": "participates in", - "source": "GO:0043117", - "target": "GO:0006954" + "key": "positively regulates", + "source": "GO:0030322", + "target": "GO:0010460" }, { - "key": "participates in", - "source": "GO:0043312", - "target": "GO:0006954" + "key": "located in", + "source": "GO:0010460", + "target": "UBERON:0001133" }, { - "key": "positively correlated with", - "source": "GO:0006954", - "target": "MESH:D014581" + "key": "ameliorates", + "source": "UBERON:0001133", + "target": "MESH:D006947" } ], "multigraph": true, "nodes": [ { - "id": "MESH:C103639", + "id": "MESH:D002122", "label": "Drug", - "name": "rupatadine" - }, - { - "id": "UniProt:P35367", - "label": "Protein", - "name": "Histamine H1 receptor" - }, - { - "id": "UniProt:P25105", - "label": "Protein", - "name": "Platelet-activating factor receptor" + "name": "Calcium chloride" }, { - "id": "GO:0043117", + "id": "GO:0030322", "label": "BiologicalProcess", - "name": "positive regulation of vascular permeability" + "name": "stabilization of membrane potential" }, { - "id": "GO:0043312", + "id": "GO:0010460", "label": "BiologicalProcess", - "name": "neutrophil degranulation" + "name": "heart rate" }, { - "id": "GO:0006954", - "label": "BiologicalProcess", - "name": "inflammatory response" + "id": "UBERON:0001133", + "label": "GrossAnatomicalStructure", + "name": "cardiac muscle" }, { - "id": "MESH:D014581", + "id": "MESH:D006947", "label": "Disease", - "name": "Urticaria" + "name": "Hyperkalemia" } ], - "reference": "https://go.drugbank.com/drugs/DB11614#mechanism-of-action https://en.wikipedia.org/wiki/Rupatadine#Mechanism_of_action" + "reference": "https://go.drugbank.com/drugs/DB01164#mechanismofaction https://www.aafp.org/afp/2015/0915/p487.html https://en.wikipedia.org/wiki/Hyperkalemia#:~:text=Calcium%20(calcium%20chloride%20or%20calcium,is%20elevated%20abnormally%20in%20hyperkalemia https://pubchem.ncbi.nlm.nih.gov/compound/Calcium-dichloride#section=Pharmacology-and-Biochemistry" }, { "directed": true, "graph": { - "disease": "Disorder of the urea cycle metabolism", - "disease_mesh": "MESH:D056806", - "drug": "glycerol phenylbutyrate", - "drug_mesh": "MESH:C570223", - "drugbank": "DB:DB08909" + "disease": "Cardiac arrest", + "disease_mesh": "MESH:D006323", + "drug": "Calcium chloride", + "drug_mesh": "MESH:D002122", + "drugbank": "DB:DB01164" }, "links": [ { - "key": "derives into", - "source": "MESH:C570223", - "target": "CHEBI:75316" + "key": "positively regulates", + "source": "MESH:D002122", + "target": "GO:0060075" }, { - "key": "derives into", - "source": "CHEBI:75316", - "target": "MESH:D010648" + "key": "located in", + "source": "GO:0060075", + "target": "UBERON:0001133" }, { - "key": "molecularly interacts with", - "source": "MESH:D010648", - "target": "CHEBI:28300" + "key": "correlated with", + "source": "UBERON:0001133", + "target": "MESH:D006323" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:D002122", + "label": "Drug", + "name": "Calcium chloride" }, { - "key": "produces", - "source": "CHEBI:28300", - "target": "CHEBI:17884" + "id": "GO:0060075", + "label": "BiologicalProcess", + "name": "resting membrane potential" }, { - "key": "negatively correlated with", - "source": "CHEBI:17884", - "target": "MESH:D056806" + "id": "UBERON:0001133", + "label": "GrossAnatomicalStructure", + "name": "cardiac muscle" + }, + { + "id": "MESH:D006323", + "label": "Disease", + "name": "Cardiac arrest" } ], - "multigraph": true, - "nodes": [ + "reference": "https://go.drugbank.com/drugs/DB01164#mechanismofaction https://www.aafp.org/afp/2015/0915/p487.html https://en.wikipedia.org/wiki/Hyperkalemia#:~:text=Calcium%20(calcium%20chloride%20or%20calcium,is%20elevated%20abnormally%20in%20hyperkalemia https://pubchem.ncbi.nlm.nih.gov/compound/Calcium-dichloride#section=Pharmacology-and-Biochemistry" + }, + { + "directed": true, + "graph": { + "disease": "Hypocalcemia", + "disease_mesh": "MESH:D006996", + "drug": "Calcium chloride", + "drug_mesh": "MESH:D002122", + "drugbank": "DB:DB01164" + }, + "links": [ { - "id": "MESH:C570223", - "label": "Drug", - "name": "glycerol phenylbutyrate" + "key": "increases abundance of", + "source": "MESH:D002122", + "target": "MESH:D002118" }, { - "id": "CHEBI:75316", - "label": "ChemicalSubstance", - "name": "sodium phenylbutyrate" + "key": "located in", + "source": "MESH:D002118", + "target": "UBERON:0001969" }, { - "id": "MESH:D010648", - "label": "ChemicalSubstance", - "name": "Phenylacetates" + "key": "ameliorates", + "source": "UBERON:0001969", + "target": "MESH:D006996" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:D002122", + "label": "Drug", + "name": "Calcium chloride" }, { - "id": "CHEBI:28300", + "id": "MESH:D002118", "label": "ChemicalSubstance", - "name": "glutamine" + "name": "calcium" }, { - "id": "CHEBI:17884", - "label": "ChemicalSubstance", - "name": "N2-phenylacetyl-L-glutamine" + "id": "UBERON:0001969", + "label": "GrossAnatomicalStructure", + "name": "blood plasma" }, { - "id": "MESH:D056806", + "id": "MESH:D006996", "label": "Disease", - "name": "Disorder of the urea cycle metabolism" + "name": "Hypocalcemia" } ], - "reference": "https://go.drugbank.com/drugs/DB08909#mechanism-of-action https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=900e7dc0-9afe-4f50-80de-90567bb78519 https://en.wikipedia.org/wiki/Sodium_phenylbutyrate#Pharmacology" + "reference": "https://go.drugbank.com/drugs/DB01164#mechanismofaction https://www.aafp.org/afp/2015/0915/p487.html https://en.wikipedia.org/wiki/Hyperkalemia#:~:text=Calcium%20(calcium%20chloride%20or%20calcium,is%20elevated%20abnormally%20in%20hyperkalemia https://pubchem.ncbi.nlm.nih.gov/compound/Calcium-dichloride#section=Pharmacology-and-Biochemistry" } ] \ No newline at end of file diff --git a/indication_paths.yaml b/indication_paths.yaml index feb0528ed..b3c937f4b 100644 --- a/indication_paths.yaml +++ b/indication_paths.yaml @@ -31433,7 +31433,7 @@ label: Disease name: Respiratory tract infection reference: https://go.drugbank.com/drugs/DB05659 - - directed: true +- directed: true graph: disease: Rheumatoid arthritis disease_mesh: MESH:D001172 @@ -31705,7 +31705,8 @@ label: Disease name: Psoriatic Arthritis reference: https://go.drugbank.com/drugs/DB00065#BE0000704 -- comment: Methacarbamol is a skeletal muscle relaxant with an unknown mechanism of action +- comment: Methacarbamol is a skeletal muscle relaxant with an unknown mechanism + of action directed: true graph: disease: Spasticity @@ -32251,7 +32252,8 @@ - id: MESH:D008881 label: Disease name: Migraine - reference: https://go.drugbank.com/drugs/DB00918 https://pubmed.ncbi.nlm.nih.gov/16099727/ https://pubmed.ncbi.nlm.nih.gov/27312704/ + reference: https://go.drugbank.com/drugs/DB00918 https://pubmed.ncbi.nlm.nih.gov/16099727/ + https://pubmed.ncbi.nlm.nih.gov/27312704/ - directed: true graph: disease: Onychomycosis due to dermatophyte @@ -32268,7 +32270,7 @@ target: GO:0006412 - key: occurs in source: GO:0006412 - target: NCBITaxon:5551 + target: NCBITaxon:5551 - key: causes source: NCBITaxon:5551 target: MESH:D014009 @@ -32283,10 +32285,2854 @@ - id: GO:0006412 label: BiologicalProcess name: Protein biosynthesis - - id: NCBITaxon:5551 + - id: NCBITaxon:5551 label: OrganismTaxon name: Trichophyton rubrum - id: MESH:D014009 label: Disease name: Onychomycosis due to dermatophyte reference: https://go.drugbank.com/drugs/DB09041#BE0002395 https://en.wikipedia.org/wiki/Onychomycosis +- directed: true + graph: + disease: Ventricular premature beats + disease_mesh: MESH:D018879 + drug: Acebutolol + drug_mesh: MESH:D000070 + drugbank: DB:DB01193 + links: + - key: decreases activity of + source: MESH:D000070 + target: UniProt:P08588 + - key: negatively regulates + source: UniProt:P08588 + target: HP:0001649 + - key: decreases activity of + source: HP:0001649 + target: UniProt:P08588 + - key: negatively regulates + source: UniProt:P08588 + target: HP:0000822 + - key: ameliorates + source: HP:0001649 + target: MESH:D018879 + - key: ameliorates + source: HP:0000822 + target: MESH:D018879 + multigraph: true + nodes: + - id: MESH:D000070 + label: Drug + name: Acebutolol + - id: UniProt:P08588 + label: Protein + name: Beta-1 adrenergic receptor + - id: HP:0001649 + label: PhenotypicFeature + name: heart rate + - id: HP:0000822 + label: PhenotypicFeature + name: blood pressure + - id: MESH:D018879 + label: Disease + name: Ventricular premature beats + reference: https://go.drugbank.com/drugs/DB01193#mechanismofaction https://en.wikipedia.org/wiki/Acebutolol +- directed: true + graph: + disease: Diabetes mellitus type 2 + disease_mesh: MESH:D003924 + drug: Acetohexamide + drug_mesh: MESH:D000092 + drugbank: DB:DB00414 + links: + - key: increases activity of + source: MESH:D000092 + target: CL:0000169 + - key: increases secretion of + source: CL:0000169 + target: MESH:D007328 + - key: negatively regulates + source: MESH:D007328 + target: MESH:D001786 + - key: ameliorates + source: MESH:D001786 + target: MESH:D003924 + multigraph: true + nodes: + - id: MESH:D000092 + label: Drug + name: Acetohexamide + - id: CL:0000169 + label: Cell + name: pancreatic beta cells + - id: MESH:D007328 + label: ChemicalSubstance + name: insulin + - id: MESH:D001786 + label: ChemicalSubstance + name: blood sugar + - id: MESH:D003924 + label: Disease + name: Diabetes mellitus type 2 + reference: https://go.drugbank.com/drugs/DB00414#mechanismofaction +- directed: true + graph: + disease: Open-angle glaucoma + disease_mesh: MESH:D005902 + drug: Apraclonidine + drug_mesh: MESH:C016986 + drugbank: DB:DB00964 + links: + - key: increases activity of + source: MESH:C016986 + target: UniProt:P08913 + - key: decreases synthesis of + source: UniProt:P08913 + target: UBERON:0001796 + - key: negatively regulates + source: UBERON:0001796 + target: HP:0007906 + - key: positively regulates + source: UniProt:P08913 + target: GO:0045907 + - key: positively regulates + source: GO:0045907 + target: HP:0012630 + - key: negatively regulates + source: HP:0012630 + target: HP:0007906 + - key: ameliorates + source: HP:0007906 + target: MESH:D005902 + multigraph: true + nodes: + - id: MESH:C016986 + label: Drug + name: Apraclonidine + - id: UniProt:P08913 + label: Protein + name: alpha2 adrenergic receptor + - id: UBERON:0001796 + label: GrossAnatomicalStructure + name: aqueous humor + - id: HP:0007906 + label: PhenotypicFeature + name: intraocular pressure + - id: GO:0045907 + label: BiologicalProcess + name: vasoconstriction + - id: HP:0012630 + label: PhenotypicFeature + name: uveoscleral outflow + - id: HP:0007906 + label: PhenotypicFeature + name: intraocular pressure + - id: MESH:D005902 + label: Disease + name: Open-angle glaucoma + reference: https://go.drugbank.com/drugs/DB00964#mechanismofaction +- directed: true + graph: + disease: Peripheral T-cell lymphoma + disease_mesh: MESH:D016411 + drug: Belinostat + drug_mesh: MESH:C487081 + drugbank: DB:DB05015 + links: + - key: decreases activity of + source: MESH:C487081 + target: InterPro:IPR000286 + - key: increases abundance of + source: InterPro:IPR000286 + target: GO:0070577 + - key: decreases activity of + source: GO:0070577 + target: HP:0031377 + - key: increases abundance of + source: InterPro:IPR000286 + target: GO:0070577 + - key: causes + source: GO:0070577 + target: GO:0071158 + - key: increases abundance of + source: InterPro:IPR000286 + target: GO:0070577 + - key: negatively regulates + source: GO:0070577 + target: GO:0001525 + - key: increases abundance of + source: InterPro:IPR000286 + target: GO:0070577 + - key: positively regulates + source: GO:0070577 + target: GO:0006915 + - key: correlated with + source: GO:0006915 + target: MESH:D016411 + - key: correlated with + source: HP:0031377 + target: MESH:D016411 + - key: correlated with + source: GO:0071158 + target: MESH:D016411 + - key: correlated with + source: GO:0001525 + target: MESH:D016411 + multigraph: true + nodes: + - id: MESH:C487081 + label: Drug + name: Belinostat + - id: InterPro:IPR000286 + label: GeneFamily + name: histone deacetylase + - id: GO:0070577 + label: ChemicalSubstance + name: acetylated histones + - id: HP:0031377 + label: PhenotypicFeature + name: tumor cell proliferation + - id: GO:0071158 + label: BiologicalProcess + name: cell cycle arrest + - id: GO:0001525 + label: BiologicalProcess + name: angiogenesis + - id: GO:0006915 + label: BiologicalProcess + name: apoptosis + - id: MESH:D016411 + label: Disease + name: Peripheral T-cell lymphoma + reference: https://go.drugbank.com/drugs/DB05015#mechanismofaction +- directed: true + graph: + disease: Falciparum malaria + disease_mesh: MESH:D016778 + drug: Quinine + drug_mesh: MESH:D011803 + drugbank: DB:DB00468 + links: + - key: decreases activity of + source: MESH:D011803 + target: UniProt:Q3ZJJ7 + - key: disrupts + reference: https://doi.org/10.1016/S0014-5793(99)01260-0 + source: UniProt:Q3ZJJ7 + target: InterPro:IPR002338 + - key: increases abundance of + source: InterPro:IPR002338 + target: MESH:D006418 + - key: enables + source: MESH:D006418 + target: GO:0008219 + - key: in taxon + source: GO:0008219 + target: NCBITaxon:5833 + - key: causes + source: NCBITaxon:5833 + target: MESH:D016778 + multigraph: true + nodes: + - id: MESH:D011803 + label: Drug + name: Quinine + - id: UniProt:Q3ZJJ7 + label: Protein + name: heme polymerase + - id: InterPro:IPR002338 + label: GeneFamily + name: hemoglobin + - id: MESH:D006418 + label: ChemicalSubstance + name: heme + - id: GO:0008219 + label: BiologicalProcess + name: cell death + - id: NCBITaxon:5833 + label: OrganismTaxon + name: Plasmodium falciparum + - id: MESH:D016778 + label: Disease + name: Falciparum malaria + reference: https://go.drugbank.com/drugs/DB00468#mechanismofaction https://en.wikipedia.org/wiki/Quinine#Mechanism_of_action +- directed: true + graph: + disease: Falciparum malaria + disease_mesh: MESH:D016778 + drug: Quinine + drug_mesh: MESH:D011803 + drugbank: DB:DB00468 + links: + - key: negatively regulates + source: MESH:D011803 + target: GO:0071897 + - key: negatively regulates + source: GO:0071897 + target: GO:0008219 + - key: negatively regulates + source: MESH:D011803 + target: GO:0006351 + - key: negatively regulates + source: GO:0006351 + target: GO:0008219 + - key: negatively regulates + source: MESH:D011803 + target: GO:0006412 + - key: negatively regulates + source: GO:0006412 + target: GO:0008219 + - key: negatively regulates + source: MESH:D011803 + target: REACT:R-HSA-70171 + - key: enables + source: REACT:R-HSA-70171 + target: GO:0008219 + - key: in taxon + source: GO:0008219 + target: NCBITaxon:5833 + - key: causes + source: NCBITaxon:5833 + target: MESH:D016778 + multigraph: true + nodes: + - id: MESH:D011803 + label: Drug + name: Quinine + - id: GO:0071897 + label: BiologicalProcess + name: DNA synthesis + - id: GO:0006351 + label: BiologicalProcess + name: RNA synthesis + - id: GO:0006412 + label: BiologicalProcess + name: protein synthesis + - id: REACT:R-HSA-70171 + label: Pathway + name: glycolysis + - id: GO:0008219 + label: BiologicalProcess + name: cell death + - id: NCBITaxon:5833 + label: OrganismTaxon + name: Plasmodium falciparum + - id: MESH:D016778 + label: Disease + name: Falciparum malaria + reference: https://go.drugbank.com/drugs/DB00468#mechanismofaction https://en.wikipedia.org/wiki/Quinine#Mechanism_of_action +- directed: true + graph: + disease: Hypertensive disorder + disease_mesh: MESH:D006973 + drug: Eplerenone + drug_mesh: null + drugbank: DB:DB00700 + links: + - key: decreases activity of + source: DB:DB00700 + target: UniProt:P08235 + - key: increases abundance of + source: UniProt:P08235 + target: UniProt:P00797 + - key: increases abundance of + source: UniProt:P08235 + target: MESH:D000450 + - key: decreases abundance of + source: UniProt:P00797 + target: HP:0011104 + - key: decreases abundance of + source: MESH:D000450 + target: HP:0011104 + - key: negatively regulates + source: HP:0011104 + target: HP:0004421 + - key: negatively regulates + source: HP:0011104 + target: HP:0005117 + - key: prevents + source: HP:0004421 + target: MESH:D006973 + - key: prevents + source: HP:0005117 + target: MESH:D006973 + multigraph: true + nodes: + - id: DB:DB00700 + label: Drug + name: Eplerenone + - id: UniProt:P08235 + label: Protein + name: mineralocorticoid receptor + - id: UniProt:P00797 + label: Protein + name: plasma renin + - id: MESH:D000450 + label: ChemicalSubstance + name: serum aldosterone + - id: HP:0011104 + label: PhenotypicFeature + name: blood volume + - id: HP:0005117 + label: PhenotypicFeature + name: diastolic blood pressure + - id: HP:0004421 + label: PhenotypicFeature + name: systolic blood pressure + - id: MESH:D006973 + label: Disease + name: Hypertensive disorder + reference: https://go.drugbank.com/drugs/DB00700#mechanismofaction https://en.wikipedia.org/wiki/Eplerenone + DOI:10.1002/14651858.CD008996.pub2 +- directed: true + graph: + disease: Hyperuricemia + disease_mesh: MESH:D033461 + drug: Febuxostat + drug_mesh: MESH:D000069465 + drugbank: DB:DB04854 + links: + - key: decreases activity of + source: MESH:D000069465 + target: UniProt:P47989 + - key: decreases abundance of + source: UniProt:P47989 + target: MESH:D014527 + - key: correlated with + source: MESH:D014527 + target: MESH:D033461 + multigraph: true + nodes: + - id: MESH:D000069465 + label: Drug + name: Febuxostat + - id: UniProt:P47989 + label: Protein + name: Xanthine dehydrogenase/oxidase + - id: MESH:D014527 + label: ChemicalSubstance + name: serum uric acid + - id: MESH:D033461 + label: Disease + name: Hyperuricemia + reference: https://go.drugbank.com/drugs/DB04854#mechanismofaction +- directed: true + graph: + disease: Glucosylceramide beta-glucosidase deficiency + disease_mesh: MESH:D005776 + drug: Imiglucerase + drug_mesh: MESH:C090568 + drugbank: DB:DB00053 + links: + - key: increases degradation of + source: MESH:C090568 + target: MESH:D005963 + - key: enables + source: MESH:D005963 + target: REACT:R-HSA-556833 + - key: prevents + source: REACT:R-HSA-556833 + target: MESH:D005776 + multigraph: true + nodes: + - id: MESH:C090568 + label: Drug + name: Imiglucerase + - id: MESH:D005963 + label: ChemicalSubstance + name: Glucocerebroside + - id: REACT:R-HSA-556833 + label: Pathway + name: membrane lipid degradation + - id: MESH:D005776 + label: Disease + name: Glucosylceramide beta-glucosidase deficiency + reference: https://go.drugbank.com/drugs/DB00053#mechanismofaction +- directed: true + graph: + disease: Falciparum malaria + disease_mesh: MESH:D016778 + drug: Proguanil + drug_mesh: MESH:D002727 + drugbank: DB:DB01131 + links: + - key: has metabolite + source: MESH:D002727 + target: MESH:C026009 + - key: decreases activity of + source: MESH:C026009 + target: UniProt:P13922 + - key: decreases synthesis of + source: UniProt:P13922 + target: REACT:R-HSA-8956320 + - key: disrupts + source: REACT:R-HSA-8956320 + target: GO:0071897 + - key: in taxon + source: GO:0071897 + target: NCBITaxon:5833 + - key: causes + source: NCBITaxon:5833 + target: MESH:D016778 + multigraph: true + nodes: + - id: MESH:D002727 + label: Drug + name: Proguanil + - id: MESH:C026009 + label: Drug + name: Cycloguanil + - id: UniProt:P13922 + label: Protein + name: Bifunctional dihydrofolate reductase-thymidylate synthase + - id: REACT:R-HSA-8956320 + label: Pathway + name: purines and pyrimidines + - id: GO:0071897 + label: BiologicalProcess + name: DNA synthesis + - id: NCBITaxon:5833 + label: OrganismTaxon + name: Plasmodium falciparum + - id: MESH:D016778 + label: Disease + name: Falciparum malaria + reference: https://go.drugbank.com/drugs/DB01131#mechanismofaction +- directed: true + graph: + disease: Bacterial endocarditis + disease_mesh: MESH:D004697 + drug: Cilastatin + drug_mesh: MESH:D015377 + drugbank: DB:DB01597 + links: + - key: decreases activity of + source: MESH:D015377 + target: UniProt:P16444 + - key: disrupts + source: UniProt:P16444 + target: DB:D015378 + - key: negatively regulates + source: DB:D015378 + target: NCBITaxon:2 + - key: causes + source: NCBITaxon:2 + target: MESH:D004697 + multigraph: true + nodes: + - id: MESH:D015377 + label: Drug + name: Cilastatin + - id: UniProt:P16444 + label: Protein + name: Dipeptidase 1 + - id: DB:D015378 + label: Drug + name: Imipenem + - id: NCBITaxon:2 + label: OrganismTaxon + name: Bacteria + - id: MESH:D004697 + label: Disease + name: Bacterial endocarditis + reference: https://go.drugbank.com/drugs/DB01597#mechanismofaction +- directed: true + graph: + disease: Abdominal abscess + disease_mesh: MESH:D018784 + drug: Cilastatin + drug_mesh: MESH:D015377 + drugbank: DB:DB01597 + links: + - key: decreases activity of + source: MESH:D015377 + target: UniProt:P16444 + - key: disrupts + source: UniProt:P16444 + target: DB:D015378 + - key: negatively regulates + source: DB:D015378 + target: NCBITaxon:2 + - key: causes + source: NCBITaxon:2 + target: MESH:D018784 + multigraph: true + nodes: + - id: MESH:D015377 + label: Drug + name: Cilastatin + - id: UniProt:P16444 + label: Protein + name: Dipeptidase 1 + - id: DB:D015378 + label: Drug + name: Imipenem + - id: NCBITaxon:2 + label: OrganismTaxon + name: Bacteria + - id: MESH:D018784 + label: Disease + name: Abdominal abscess + reference: https://go.drugbank.com/drugs/DB01597#mechanismofaction +- directed: true + graph: + disease: Infectious disease of abdomen + disease_mesh: MESH:D059413 + drug: Cilastatin + drug_mesh: MESH:D015377 + drugbank: DB:DB01597 + links: + - key: decreases activity of + source: MESH:D015377 + target: UniProt:P16444 + - key: disrupts + source: UniProt:P16444 + target: DB:D015378 + - key: negatively regulates + source: DB:D015378 + target: NCBITaxon:2 + - key: causes + source: NCBITaxon:2 + target: MESH:D059413 + multigraph: true + nodes: + - id: MESH:D015377 + label: Drug + name: Cilastatin + - id: UniProt:P16444 + label: Protein + name: Dipeptidase 1 + - id: DB:D015378 + label: Drug + name: Imipenem + - id: NCBITaxon:2 + label: OrganismTaxon + name: Bacteria + - id: MESH:D059413 + label: Disease + name: Infectious disease of abdomen + reference: https://go.drugbank.com/drugs/DB01597#mechanismofaction +- directed: true + graph: + disease: Pneumonia due to Streptococcus + disease_mesh: MESH:D011018 + drug: Cilastatin + drug_mesh: MESH:D015377 + drugbank: DB:DB01597 + links: + - key: decreases activity of + source: MESH:D015377 + target: UniProt:P16444 + - key: disrupts + source: UniProt:P16444 + target: DB:D015378 + - key: negatively regulates + source: DB:D015378 + target: NCBITaxon:1313 + - key: causes + source: NCBITaxon:1313 + target: MESH:D011018 + multigraph: true + nodes: + - id: MESH:D015377 + label: Drug + name: Cilastatin + - id: UniProt:P16444 + label: Protein + name: Dipeptidase 1 + - id: DB:D015378 + label: Drug + name: Imipenem + - id: NCBITaxon:1313 + label: OrganismTaxon + name: Streptococcus pneumoniae + - id: MESH:D011018 + label: Disease + name: Pneumonia due to Streptococcus + reference: https://go.drugbank.com/drugs/DB01597#mechanismofaction +- directed: true + graph: + disease: Bacterial pneumonia + disease_mesh: MESH:D018410 + drug: Cilastatin + drug_mesh: MESH:D015377 + drugbank: DB:DB01597 + links: + - key: decreases activity of + source: MESH:D015377 + target: UniProt:P16444 + - key: disrupts + source: UniProt:P16444 + target: DB:D015378 + - key: negatively regulates + source: DB:D015378 + target: NCBITaxon:2 + - key: causes + source: NCBITaxon:2 + target: MESH:D018410 + multigraph: true + nodes: + - id: MESH:D015377 + label: Drug + name: Cilastatin + - id: UniProt:P16444 + label: Protein + name: Dipeptidase 1 + - id: DB:D015378 + label: Drug + name: Imipenem + - id: NCBITaxon:2 + label: OrganismTaxon + name: Bacteria + - id: MESH:D018410 + label: Disease + name: Bacterial pneumonia + reference: https://go.drugbank.com/drugs/DB01597#mechanismofaction +- directed: true + graph: + disease: Endometritis + disease_mesh: MESH:D004716 + drug: Cilastatin + drug_mesh: MESH:D015377 + drugbank: DB:DB01597 + links: + - key: decreases activity of + source: MESH:D015377 + target: UniProt:P16444 + - key: disrupts + source: UniProt:P16444 + target: DB:D015378 + - key: negatively regulates + source: DB:D015378 + target: NCBITaxon:2 + - key: causes + source: NCBITaxon:2 + target: MESH:D004716 + multigraph: true + nodes: + - id: MESH:D015377 + label: Drug + name: Cilastatin + - id: UniProt:P16444 + label: Protein + name: Dipeptidase 1 + - id: DB:D015378 + label: Drug + name: Imipenem + - id: NCBITaxon:2 + label: OrganismTaxon + name: Bacteria + - id: MESH:D004716 + label: Disease + name: Endometritis + reference: https://go.drugbank.com/drugs/DB01597#mechanismofaction +- directed: true + graph: + disease: Hypertensive disorder + disease_mesh: MESH:D006973 + drug: Clonidine + drug_mesh: MESH:D003000 + drugbank: DB:DB00575 + links: + - key: increases activity of + source: MESH:D003000 + target: UniProt:P08913 + - key: coexists with + source: UniProt:P08913 + target: InterPro:IPR001408 + - key: decreases activity of + source: InterPro:IPR001408 + target: InterPro:IPR030672 + - key: positively regulates + source: InterPro:IPR030672 + target: GO:0099104 + - key: causes + source: GO:0099104 + target: GO:0060081 + - key: negatively regulates + source: GO:0060081 + target: HP:0000822 + - key: correlated with + source: HP:0000822 + target: MESH:D006973 + multigraph: true + nodes: + - id: MESH:D003000 + label: Drug + name: Clonidine + - id: UniProt:P08913 + label: Protein + name: Alpha-2A adrenergic receptor + - id: InterPro:IPR001408 + label: GeneFamily + name: Gi protein alpha subunit + - id: InterPro:IPR030672 + label: GeneFamily + name: Adenylate cyclase + - id: GO:0099104 + label: MolecularActivity + name: opening of a potassium channel + - id: GO:0060081 + label: BiologicalProcess + name: hyperpolarization + - id: HP:0000822 + label: PhenotypicFeature + name: blood pressure + - id: MESH:D006973 + label: Disease + name: Hypertensive disorder + reference: https://go.drugbank.com/drugs/DB00575#mechanismofaction https://en.wikipedia.org/wiki/Clonidine + https://pubchem.ncbi.nlm.nih.gov/compound/Clonidine +- directed: true + graph: + disease: Hypertensive disorder + disease_mesh: MESH:D006973 + drug: Clonidine + drug_mesh: MESH:D003000 + drugbank: DB:DB00575 + links: + - key: increases activity of + source: MESH:D003000 + target: UniProt:P08913 + - key: located in + source: UniProt:P08913 + target: UBERON:0002298 + - key: decreases activity of + source: UBERON:0002298 + target: GO:0003072 + - key: negatively regulates + source: GO:0003072 + target: HP:0000822 + - key: correlated with + source: HP:0000822 + target: MESH:D006973 + multigraph: true + nodes: + - id: MESH:D003000 + label: Drug + name: Clonidine + - id: UniProt:P08913 + label: Protein + name: Alpha-2A adrenergic receptor + - id: UBERON:0002298 + label: GrossAnatomicalStructure + name: Brain stem + - id: GO:0003072 + label: BiologicalProcess + name: peripheral vascular resistance + - id: HP:0000822 + label: PhenotypicFeature + name: blood pressure + - id: MESH:D006973 + label: Disease + name: Hypertensive disorder + reference: https://go.drugbank.com/drugs/DB00575#mechanismofaction https://en.wikipedia.org/wiki/Clonidine + https://pubchem.ncbi.nlm.nih.gov/compound/Clonidine +- directed: true + graph: + disease: Attention deficit hyperactivity disorder + disease_mesh: MESH:D001289 + drug: Clonidine + drug_mesh: MESH:D003000 + drugbank: DB:DB00575 + links: + - key: increases activity of + source: MESH:D003000 + target: UniProt:P08913 + - key: located in + source: UniProt:P08913 + target: UBERON:0000451 + - key: prevents + source: UBERON:0000451 + target: GO:0048243 + - key: disrupts + source: GO:0048243 + target: HP:0007018 + - key: correlated with + source: HP:0007018 + target: MESH:D001289 + multigraph: true + nodes: + - id: MESH:D003000 + label: Drug + name: Clonidine + - id: UniProt:P08913 + label: Protein + name: Alpha-2A adrenergic receptor + - id: UBERON:0000451 + label: GrossAnatomicalStructure + name: prefrontal cortex + - id: GO:0048243 + label: BiologicalProcess + name: secretion of norepinephrine + - id: HP:0007018 + label: PhenotypicFeature + name: irrelevant attention + - id: MESH:D001289 + label: Disease + name: Attention deficit hyperactivity disorder + reference: https://go.drugbank.com/drugs/DB00575#mechanismofaction https://en.wikipedia.org/wiki/Clonidine + https://pubchem.ncbi.nlm.nih.gov/compound/Clonidine +- directed: true + graph: + disease: Open-angle glaucoma + disease_mesh: MESH:D005902 + drug: Clonidine + drug_mesh: MESH:D003000 + drugbank: DB:DB00575 + links: + - key: increases activity of + source: MESH:D003000 + target: UniProt:P08913 + - key: decreases activity of + source: UniProt:P08913 + target: GO:0003072 + - key: negatively regulates + source: GO:0003072 + target: HP:0000822 + - key: negatively regulates + source: HP:0000822 + target: HP:0007906 + - key: correlated with + source: HP:0007906 + target: MESH:D005902 + multigraph: true + nodes: + - id: MESH:D003000 + label: Drug + name: Clonidine + - id: UniProt:P08913 + label: Protein + name: Alpha-2A adrenergic receptor + - id: GO:0003072 + label: BiologicalProcess + name: peripheral vascular resistance + - id: HP:0000822 + label: PhenotypicFeature + name: blood pressure + - id: HP:0007906 + label: PhenotypicFeature + name: intraocular pressure + - id: MESH:D005902 + label: Disease + name: Open-angle glaucoma + reference: https://go.drugbank.com/drugs/DB00575#mechanismofaction https://en.wikipedia.org/wiki/Clonidine + https://pubchem.ncbi.nlm.nih.gov/compound/Clonidine +- directed: true + graph: + disease: Hypokalemia + disease_mesh: MESH:D007008 + drug: Calcium chloride + drug_mesh: MESH:D002122 + drugbank: DB:DB01164 + links: + - key: treats + source: MESH:D002122 + target: MESH:D007008 + multigraph: true + nodes: + - id: MESH:D002122 + label: Drug + name: Calcium chloride + - id: MESH:D007008 + label: Disease + name: Hypokalemia + reference: https://go.drugbank.com/drugs/DB01164#mechanismofaction https://www.aafp.org/afp/2015/0915/p487.html + https://en.wikipedia.org/wiki/Hyperkalemia#:~:text=Calcium%20(calcium%20chloride%20or%20calcium,is%20elevated%20abnormally%20in%20hyperkalemia + https://pubchem.ncbi.nlm.nih.gov/compound/Calcium-dichloride#section=Pharmacology-and-Biochemistry +- directed: true + graph: + disease: Hyperkalemia + disease_mesh: MESH:D006947 + drug: Calcium chloride + drug_mesh: MESH:D002122 + drugbank: DB:DB01164 + links: + - key: regulates + source: MESH:D002122 + target: GO:0030322 + - key: positively regulates + source: GO:0030322 + target: GO:0010460 + - key: located in + source: GO:0010460 + target: UBERON:0001133 + - key: ameliorates + source: UBERON:0001133 + target: MESH:D006947 + multigraph: true + nodes: + - id: MESH:D002122 + label: Drug + name: Calcium chloride + - id: GO:0030322 + label: BiologicalProcess + name: stabilization of membrane potential + - id: GO:0010460 + label: BiologicalProcess + name: heart rate + - id: UBERON:0001133 + label: GrossAnatomicalStructure + name: cardiac muscle + - id: MESH:D006947 + label: Disease + name: Hyperkalemia + reference: https://go.drugbank.com/drugs/DB01164#mechanismofaction https://www.aafp.org/afp/2015/0915/p487.html + https://en.wikipedia.org/wiki/Hyperkalemia#:~:text=Calcium%20(calcium%20chloride%20or%20calcium,is%20elevated%20abnormally%20in%20hyperkalemia + https://pubchem.ncbi.nlm.nih.gov/compound/Calcium-dichloride#section=Pharmacology-and-Biochemistry +- directed: true + graph: + disease: Cardiac arrest + disease_mesh: MESH:D006323 + drug: Calcium chloride + drug_mesh: MESH:D002122 + drugbank: DB:DB01164 + links: + - key: positively regulates + source: MESH:D002122 + target: GO:0060075 + - key: located in + source: GO:0060075 + target: UBERON:0001133 + - key: correlated with + source: UBERON:0001133 + target: MESH:D006323 + multigraph: true + nodes: + - id: MESH:D002122 + label: Drug + name: Calcium chloride + - id: GO:0060075 + label: BiologicalProcess + name: resting membrane potential + - id: UBERON:0001133 + label: GrossAnatomicalStructure + name: cardiac muscle + - id: MESH:D006323 + label: Disease + name: Cardiac arrest + reference: https://go.drugbank.com/drugs/DB01164#mechanismofaction https://www.aafp.org/afp/2015/0915/p487.html + https://en.wikipedia.org/wiki/Hyperkalemia#:~:text=Calcium%20(calcium%20chloride%20or%20calcium,is%20elevated%20abnormally%20in%20hyperkalemia + https://pubchem.ncbi.nlm.nih.gov/compound/Calcium-dichloride#section=Pharmacology-and-Biochemistry +- directed: true + graph: + disease: Hypocalcemia + disease_mesh: MESH:D006996 + drug: Calcium chloride + drug_mesh: MESH:D002122 + drugbank: DB:DB01164 + links: + - key: increases abundance of + source: MESH:D002122 + target: MESH:D002118 + - key: located in + source: MESH:D002118 + target: UBERON:0001969 + - key: ameliorates + source: UBERON:0001969 + target: MESH:D006996 + multigraph: true + nodes: + - id: MESH:D002122 + label: Drug + name: Calcium chloride + - id: MESH:D002118 + label: ChemicalSubstance + name: calcium + - id: UBERON:0001969 + label: GrossAnatomicalStructure + name: blood plasma + - id: MESH:D006996 + label: Disease + name: Hypocalcemia + reference: https://go.drugbank.com/drugs/DB01164#mechanismofaction https://www.aafp.org/afp/2015/0915/p487.html + https://en.wikipedia.org/wiki/Hyperkalemia#:~:text=Calcium%20(calcium%20chloride%20or%20calcium,is%20elevated%20abnormally%20in%20hyperkalemia + https://pubchem.ncbi.nlm.nih.gov/compound/Calcium-dichloride#section=Pharmacology-and-Biochemistry +- directed: true + graph: + disease: Endometriosis + disease_mesh: MESH:D004715 + drug: tranexamic acid + drug_mesh: MESH:D014148 + drugbank: DB:DB00302 + links: + - key: negatively regulates + source: MESH:D014148 + target: UniProt:P00747 + - key: decreases activity of + source: MESH:D014148 + target: MESH:D005341 + - key: positively regulates + source: MESH:D005341 + target: GO:0042730 + - key: positively regulates + source: UniProt:P00747 + target: GO:0042730 + - key: correlated with + source: GO:0042730 + target: HP:0001892 + - key: correlated with + source: GO:0042730 + target: GO:0006954 + - key: positively correlated with + source: GO:0006954 + target: MESH:D004715 + - key: positively correlated with + source: HP:0001892 + target: MESH:D004715 + multigraph: true + nodes: + - id: MESH:D014148 + label: Drug + name: tranexamic acid + - id: UniProt:P00747 + label: Protein + name: Plasminogen + - id: MESH:D005341 + label: Protein + name: Fibrinolysin + - id: GO:0042730 + label: BiologicalProcess + name: fibrinolysis + - id: GO:0006954 + label: BiologicalProcess + name: inflammatory response + - id: HP:0001892 + label: PhenotypicFeature + name: Abnormal bleeding + - id: MESH:D004715 + label: Disease + name: Endometriosis + reference: https://go.drugbank.com/drugs/DB00302#mechanism-of-action https://en.wikipedia.org/wiki/Tranexamic_acid#Mechanism_of_action + https://pubmed.ncbi.nlm.nih.gov/32594031/ +- directed: true + graph: + disease: Menorrhagia + disease_mesh: MESH:D008595 + drug: tranexamic acid + drug_mesh: MESH:D014148 + drugbank: DB:DB00302 + links: + - key: negatively regulates + source: MESH:D014148 + target: UniProt:P00747 + - key: positively regulates + source: UniProt:P00747 + target: GO:0042730 + - key: decreases activity of + source: MESH:D014148 + target: MESH:D005341 + - key: positively regulates + source: MESH:D005341 + target: GO:0042730 + - key: correlated with + source: GO:0042730 + target: HP:0001892 + - key: positively correlated with + source: HP:0001892 + target: MESH:D008595 + multigraph: true + nodes: + - id: MESH:D014148 + label: Drug + name: tranexamic acid + - id: UniProt:P00747 + label: Protein + name: Plasminogen + - id: MESH:D005341 + label: Protein + name: Fibrinolysin + - id: GO:0042730 + label: BiologicalProcess + name: fibrinolysis + - id: HP:0001892 + label: PhenotypicFeature + name: Abnormal bleeding + - id: MESH:D008595 + label: Disease + name: Menorrhagia + reference: https://go.drugbank.com/drugs/DB00302#mechanism-of-action https://en.wikipedia.org/wiki/Tranexamic_acid#Mechanism_of_action +- directed: true + graph: + disease: Epilepsy + disease_mesh: MESH:D004827 + drug: trimethadione + drug_mesh: MESH:D014293 + drugbank: DB:DB00347 + links: + - key: decreases activity of + source: MESH:D014293 + target: UniProt:O43497 + - key: decreases activity of + source: MESH:D014293 + target: UniProt:O95180 + - key: decreases activity of + source: MESH:D014293 + target: UniProt:Q9P0X4 + - key: positively regulates + source: UniProt:O43497 + target: GO:0005245 + - key: positively regulates + source: UniProt:O95180 + target: GO:0005245 + - key: positively regulates + source: UniProt:Q9P0X4 + target: GO:0005245 + - key: positively correlated with + source: GO:0005245 + target: GO:0014047 + - key: positively correlated with + source: GO:0005245 + target: GO:0014051 + - key: negatively correlated with + source: GO:0014051 + target: GO:0036277 + - key: negatively correlated with + source: GO:0014047 + target: GO:0036277 + - key: negatively correlated with + source: GO:0036277 + target: MESH:D004827 + multigraph: true + nodes: + - id: MESH:D014293 + label: Drug + name: trimethadione + - id: UniProt:O43497 + label: Protein + name: Voltage-dependent T-type calcium channel subunit alpha-1G + - id: UniProt:Q9P0X4 + label: Protein + name: Voltage-dependent T-type calcium channel subunit alpha-1I + - id: UniProt:O95180 + label: Protein + name: Voltage-dependent T-type calcium channel subunit alpha-1H + - id: GO:0005245 + label: MolecularActivity + name: voltage-gated calcium channel activity + - id: GO:0014047 + label: BiologicalProcess + name: glutamate secretion + - id: GO:0014051 + label: BiologicalProcess + name: gamma-aminobutyric acid secretion + - id: GO:0036277 + label: BiologicalProcess + name: response to anticonvulsant + - id: MESH:D004827 + label: Disease + name: Epilepsy + reference: https://go.drugbank.com/drugs/DB00347#mechanism-of-action https://en.wikipedia.org/wiki/Anticonvulsant + https://www.targetvalidation.org/summary?drug=CHEMBL695 +- comments: DrugBank (https://go.drugbank.com/drugs/DB00668) has this drug modulating + beta receptors but not for glaucoma. For this indication, the ligand should + be an antagonist (and epinephrine is an agonist instead) + directed: true + graph: + disease: Open-angle glaucoma + disease_mesh: MESH:D005902 + drug: epinephrine + drug_mesh: MESH:D004837 + drugbank: DB:DB00668 + links: + - key: increases activity of + source: MESH:D004837 + target: UniProt:P35348 + - key: increases activity of + source: MESH:D004837 + target: UniProt:P35368 + - key: increases activity of + source: MESH:D004837 + target: UniProt:P25100 + - key: participates in + source: UniProt:P25100 + target: "REACT:R-HSA-416476\uFEFF" + - key: participates in + source: UniProt:P35348 + target: "REACT:R-HSA-416476\uFEFF" + - key: participates in + source: UniProt:P35368 + target: "REACT:R-HSA-416476\uFEFF" + - key: participates in + source: UniProt:P25100 + target: "REACT:R-HSA-416482\uFEFF" + - key: participates in + source: UniProt:P35348 + target: "REACT:R-HSA-416482\uFEFF" + - key: participates in + source: UniProt:P35368 + target: "REACT:R-HSA-416482\uFEFF" + - key: positively regulates + source: "REACT:R-HSA-416476\uFEFF" + target: GO:0042310 + - key: positively regulates + source: "REACT:R-HSA-416482\uFEFF" + target: GO:0042310 + - key: negatively correlated with + source: GO:0042310 + target: UBERON:0001796 + - key: positively correlated with + source: UBERON:0001796 + target: HP:0007906 + - key: positively correlated with + source: HP:0007906 + target: MESH:D005902 + multigraph: true + nodes: + - id: MESH:D004837 + label: Drug + name: epinephrine + - id: UniProt:P35348 + label: Protein + name: Alpha-1A adrenergic receptor + - id: UniProt:P35368 + label: Protein + name: Alpha-1B adrenergic receptor + - id: UniProt:P25100 + label: Protein + name: Alpha-1D adrenergic receptor + - id: "REACT:R-HSA-416476\uFEFF" + label: Pathway + name: G alpha (q) signalling events + - id: "REACT:R-HSA-416482\uFEFF" + label: Pathway + name: G alpha (12/13) signalling events + - id: GO:0042310 + label: BiologicalProcess + name: vasoconstriction + - id: UBERON:0001796 + label: GrossAnatomicalStructure + name: aqueous humor of eyeball + - id: HP:0007906 + label: PhenotypicFeature + name: Ocular Hypertension + - id: MESH:D005902 + label: Disease + name: Open-angle glaucoma + reference: https://en.wikipedia.org/wiki/Glaucoma#Medication https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL679/ +- comments: DrugBank (https://go.drugbank.com/drugs/DB00668) has this drug modulating + beta receptors but not for glaucoma. For this indication, the ligand should + be an antagonist (and epinephrine is an agonist instead) + directed: true + graph: + disease: Open-angle glaucoma + disease_mesh: MESH:D005902 + drug: epinephrine + drug_mesh: MESH:D004837 + drugbank: DB:DB00668 + links: + - key: increases activity of + source: MESH:D004837 + target: UniProt:P18089 + - key: increases activity of + source: MESH:D004837 + target: UniProt:P08913 + - key: participates in + source: UniProt:P18089 + target: REACT:R-HSA-418594 + - key: participates in + source: UniProt:P18089 + target: REACT:R-HSA-418597 + - key: participates in + source: UniProt:P08913 + target: REACT:R-HSA-418594 + - key: participates in + source: UniProt:P08913 + target: REACT:R-HSA-418597 + - key: positively regulates + source: REACT:R-HSA-418594 + target: GO:0042310 + - key: positively regulates + source: REACT:R-HSA-418597 + target: GO:0042310 + - key: negatively correlated with + source: GO:0042310 + target: UBERON:0001796 + - key: positively correlated with + source: UBERON:0001796 + target: HP:0007906 + - key: positively correlated with + source: HP:0007906 + target: MESH:D005902 + multigraph: true + nodes: + - id: MESH:D004837 + label: Drug + name: epinephrine + - id: UniProt:P18089 + label: Protein + name: Alpha-2B adrenergic receptor + - id: UniProt:P08913 + label: Protein + name: Alpha-2A adrenergic receptor + - id: REACT:R-HSA-418594 + label: Pathway + name: G alpha (i) signalling events + - id: REACT:R-HSA-418597 + label: Pathway + name: G alpha (z) signalling events + - id: GO:0042310 + label: BiologicalProcess + name: vasoconstriction + - id: UBERON:0001796 + label: GrossAnatomicalStructure + name: Aqueous Humor + - id: HP:0007906 + label: PhenotypicFeature + name: Ocular Hypertension + - id: MESH:D005902 + label: Disease + name: Open-angle glaucoma + reference: https://en.wikipedia.org/wiki/Glaucoma#Medication https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL679/ +- directed: true + graph: + disease: Open-angle glaucoma + disease_mesh: MESH:D005902 + drug: epinephrine + drug_mesh: MESH:D004837 + drugbank: DB:DB00668 + links: + - key: decreases activity of + source: MESH:D004837 + target: UniProt:P08913 + - key: participates in + source: UniProt:P08913 + target: REACT:R-HSA-5357956 + - key: participates in + source: UniProt:P08913 + target: REACT:R-HSA-5357786 + - key: positively correlated with + source: REACT:R-HSA-5357956 + target: MESH:D016923 + - key: positively correlated with + source: REACT:R-HSA-5357786 + target: GO:0006915 + - key: occurs in + source: MESH:D016923 + target: CL:0000740 + - key: occurs in + source: GO:0006915 + target: CL:0000740 + - key: disrupted by + source: CL:0000740 + target: MESH:D005902 + multigraph: true + nodes: + - id: MESH:D004837 + label: Drug + name: epinephrine + - id: UniProt:P08913 + label: Protein + name: Tumor necrosis factor + - id: REACT:R-HSA-5357956 + label: Pathway + name: TNFR1-induced NFkappaB signaling pathway + - id: REACT:R-HSA-5357786 + label: Pathway + name: TNFR1-induced proapoptotic signaling + - id: GO:0006915 + label: BiologicalProcess + name: apoptotic process + - id: MESH:D016923 + label: BiologicalProcess + name: Cell Death + - id: CL:0000740 + label: Cell + name: retinal ganglion cell + - id: MESH:D005902 + label: Disease + name: Open-angle glaucoma + reference: https://go.drugbank.com/drugs/DB00668#mechanism-of-action https://en.wikipedia.org/wiki/Retinal_ganglion_cell#Pathology + https://europepmc.org/article/PMC/5497582 https://europepmc.org/article/MED/32774906 + https://www.targetvalidation.org/evidence/ENSG00000232810/EFO_0000516?view=sec:literature +- directed: true + graph: + disease: Anaphylaxis + disease_mesh: MESH:D000707 + drug: epinephrine + drug_mesh: MESH:D004837 + drugbank: DB:DB00668 + links: + - key: increases activity of + source: MESH:D004837 + target: UniProt:P35348 + - key: increases activity of + source: MESH:D004837 + target: UniProt:P35368 + - key: increases activity of + source: MESH:D004837 + target: UniProt:P25100 + - key: increases activity of + source: MESH:D004837 + target: UniProt:P07550 + - key: participates in + source: UniProt:P25100 + target: "REACT:R-HSA-416476\uFEFF" + - key: participates in + source: UniProt:P35348 + target: "REACT:R-HSA-416476\uFEFF" + - key: participates in + source: UniProt:P35368 + target: "REACT:R-HSA-416476\uFEFF" + - key: participates in + source: UniProt:P25100 + target: "REACT:R-HSA-416482\uFEFF" + - key: participates in + source: UniProt:P35348 + target: "REACT:R-HSA-416482\uFEFF" + - key: participates in + source: UniProt:P35368 + target: "REACT:R-HSA-416482\uFEFF" + - key: participates in + source: UniProt:P07550 + target: "REACT:R-HSA-418555\uFEFF" + - key: negatively correlated with + source: "REACT:R-HSA-418555\uFEFF" + target: GO:0006939 + - key: negatively correlated with + source: "REACT:R-HSA-418555\uFEFF" + target: GO:0002553 + - key: positively regulates + source: "REACT:R-HSA-416476\uFEFF" + target: GO:0042310 + - key: positively regulates + source: "REACT:R-HSA-416482\uFEFF" + target: GO:0042310 + - key: negatively correlated with + source: GO:0042310 + target: HP:0001025 + - key: positively correlated with + source: HP:0001025 + target: MESH:D000707 + - key: positively correlated with + source: GO:0002553 + target: MESH:D000707 + - key: positively correlated with + source: GO:0006939 + target: MESH:D000707 + multigraph: true + nodes: + - id: MESH:D004837 + label: Drug + name: epinephrine + - id: UniProt:P35348 + label: Protein + name: Alpha-1A adrenergic receptor + - id: UniProt:P35368 + label: Protein + name: Alpha-1B adrenergic receptor + - id: UniProt:P25100 + label: Protein + name: Alpha-1D adrenergic receptor + - id: UniProt:P07550 + label: Protein + name: Beta-2 adrenergic receptor + - id: "REACT:R-HSA-416476\uFEFF" + label: Pathway + name: G alpha (q) signalling events + - id: "REACT:R-HSA-416482\uFEFF" + label: Pathway + name: G alpha (12/13) signalling events + - id: "REACT:R-HSA-418555\uFEFF" + label: Pathway + name: G alpha (s) signalling events + - id: GO:0042310 + label: BiologicalProcess + name: vasoconstriction + - id: HP:0001025 + label: PhenotypicFeature + name: Urticaria + - id: GO:0006939 + label: BiologicalProcess + name: smooth muscle contraction + - id: GO:0002553 + label: BiologicalProcess + name: histamine secretion by mast cell + - id: MESH:D000707 + label: Disease + name: Anaphylaxis + reference: https://go.drugbank.com/drugs/DB00668#mechanism-of-action https://en.wikipedia.org/wiki/Adrenergic_receptor + https://europepmc.org/article/med/32931210 https://allergy.org.au/patients/allergy-treatment/adrenaline-for-severe-allergies +- directed: true + graph: + disease: Low blood pressure + disease_mesh: MESH:D007022 + drug: epinephrine + drug_mesh: MESH:D004837 + drugbank: DB:DB00668 + links: + - key: increases activity of + source: MESH:D004837 + target: UniProt:P08588 + - key: participates in + source: UniProt:P08588 + target: "REACT:R-HSA-418555\uFEFF" + - key: positively regulates + source: "REACT:R-HSA-418555\uFEFF" + target: GO:0002027 + - key: positively regulates + source: "REACT:R-HSA-418555\uFEFF" + target: GO:0002026 + - key: positively correlated with + source: GO:0002027 + target: HP:0033533 + - key: positively correlated with + source: GO:0002026 + target: HP:0033533 + - key: positively correlated with + source: HP:0033533 + target: MESH:D007022 + multigraph: true + nodes: + - id: MESH:D004837 + label: Drug + name: epinephrine + - id: UniProt:P08588 + label: Protein + name: Beta-1 adrenergic receptor + - id: "REACT:R-HSA-418555\uFEFF" + label: Pathway + name: G alpha (s) signalling events + - id: GO:0002027 + label: BiologicalProcess + name: regulation of heart rate + - id: GO:0002026 + label: BiologicalProcess + name: regulation of the force of heart contraction + - id: HP:0033533 + label: PhenotypicFeature + name: Increased cardiac output + - id: MESH:D007022 + label: Disease + name: Low blood pressure + reference: https://go.drugbank.com/drugs/DB00668#mechanism-of-action http://pathwaymedicine.org/Epinephrine + https://en.wikipedia.org/wiki/Beta-1_adrenergic_receptor https://en.wikipedia.org/wiki/Adrenergic_receptor#History +- comments: Tiopronin is a cystine depleting agent (MESH:D065104). Please note that + NCIT has a more specific term to the MESH term used in this path (D052878 + for Urolithiasis). The NCIT ID (not listed in the path visualiser) is NCIT:C123244. + directed: true + graph: + disease: Cystinuria + disease_mesh: MESH:D003555 + drug: epinephrine + drug_mesh: MESH:D008625 + drugbank: DB:DB06823 + links: + - key: molecularly interacts with + source: MESH:D008625 + target: CHEBI:17376 + - key: causes + source: CHEBI:17376 + target: MESH:D052878 + - key: causes + source: CHEBI:17376 + target: HP:0033067 + - key: positively correlated with + source: MESH:D052878 + target: MESH:D003555 + - key: positively correlated with + source: HP:0033067 + target: MESH:D003555 + multigraph: true + nodes: + - id: MESH:D008625 + label: Drug + name: Tiopronin + - id: CHEBI:17376 + label: ChemicalSubstance + name: cystine + - id: HP:0033067 + label: PhenotypicFeature + name: Cystine crystalluria + - id: MESH:D052878 + label: PhenotypicFeature + name: Urolithiasis + - id: MESH:D003555 + label: Disease + name: Cystinuria + reference: https://go.drugbank.com/drugs/DB06823#mechanism-of-action https://en.wikipedia.org/wiki/Tiopronin#Uses + https://dailymed.nlm.nih.gov/dailymed/lookup.cfm?setid=494a714e-923c-cd57-df6c-12886afb265a#nlm34090-1 +- directed: true + graph: + disease: Hypercholesterolemia + disease_mesh: MESH:D006937 + drug: colesevelam + drug_mesh: MESH:D000069472 + drugbank: DB:DB00930 + links: + - key: molecularly interacts with + source: MESH:D000069472 + target: CHEBI:3098 + - key: derives from + source: CHEBI:3098 + target: MESH:D002784 + - key: positively correlated with + source: MESH:D002784 + target: MESH:D006937 + multigraph: true + nodes: + - id: MESH:D000069472 + label: Drug + name: colesevelam + - id: CHEBI:3098 + label: ChemicalSubstance + name: bile acid + - id: MESH:D002784 + label: ChemicalSubstance + name: Cholesterol + - id: MESH:D006937 + label: Disease + name: Hypercholesterolemia + reference: Colesevelamid is a type of ion exchange resin (MESH:D007475) +- directed: true + graph: + disease: Atopic dermatitis + disease_mesh: MESH:D003876 + drug: crisaborole + drug_mesh: MESH:C543085 + drugbank: DB:DB05219 + links: + - key: negatively regulates + source: MESH:C543085 + target: UniProt:P27815 + - key: negatively regulates + source: MESH:C543085 + target: UniProt:Q07343 + - key: negatively regulates + source: MESH:C543085 + target: UniProt:Q08493 + - key: negatively regulates + source: MESH:C543085 + target: UniProt:Q08499 + - key: positively correlated with + source: UniProt:P27815 + target: GO:0006198 + - key: positively correlated with + source: UniProt:Q07343 + target: GO:0006198 + - key: positively correlated with + source: UniProt:Q08493 + target: GO:0006198 + - key: positively correlated with + source: UniProt:Q08499 + target: GO:0006198 + - key: negatively correlated with + source: GO:0006198 + target: GO:0032680 + - key: negatively correlated with + source: GO:0006198 + target: GO:0032674 + - key: negatively correlated with + source: GO:0006198 + target: GO:0032663 + - key: negatively correlated with + source: GO:0006198 + target: GO:0032673 + - key: negatively correlated with + source: GO:0006198 + target: GO:0032649 + - key: positively correlated with + source: GO:0032680 + target: GO:0006955 + - key: positively correlated with + source: GO:0032674 + target: GO:0006955 + - key: positively correlated with + source: GO:0032663 + target: GO:0006955 + - key: positively correlated with + source: GO:0032649 + target: GO:0006955 + - key: positively correlated with + source: GO:0032673 + target: GO:0006955 + - key: positively correlated with + source: GO:0032673 + target: GO:0006954 + - key: positively correlated with + source: GO:0032649 + target: GO:0006954 + - key: positively correlated with + source: GO:0032663 + target: GO:0006954 + - key: positively correlated with + source: GO:0032674 + target: GO:0006954 + - key: positively correlated with + source: GO:0032680 + target: GO:0006954 + - key: positively correlated with + source: GO:0006955 + target: MESH:D003876 + - key: positively correlated with + source: GO:0006954 + target: MESH:D003876 + multigraph: true + nodes: + - id: MESH:C543085 + label: Drug + name: crisaborole + - id: UniProt:P27815 + label: Protein + name: cAMP-specific 3',5'-cyclic phosphodiesterase 4A + - id: UniProt:Q07343 + label: Protein + name: cAMP-specific 3',5'-cyclic phosphodiesterase 4B + - id: UniProt:Q08493 + label: Protein + name: cAMP-specific 3',5'-cyclic phosphodiesterase 4C + - id: UniProt:Q08499 + label: Protein + name: cAMP-specific 3',5'-cyclic phosphodiesterase 4D + - id: GO:0006198 + label: BiologicalProcess + name: cAMP catabolic process + - id: GO:0032680 + label: BiologicalProcess + name: regulation of tumor necrosis factor production + - id: GO:0032674 + label: BiologicalProcess + name: regulation of interleukin-5 production + - id: GO:0032663 + label: BiologicalProcess + name: regulation of interleukin-2 production + - id: GO:0032673 + label: BiologicalProcess + name: regulation of interleukin-4 production + - id: GO:0032649 + label: BiologicalProcess + name: regulation of interferon-gamma production + - id: GO:0006955 + label: BiologicalProcess + name: immune response + - id: GO:0006954 + label: BiologicalProcess + name: inflammatory response + - id: MESH:D003876 + label: Disease + name: Atopic dermatitis + reference: https://go.drugbank.com/drugs/DB00930#mechanism-of-action https://en.wikipedia.org/wiki/Crisaborole#Pharmacology +- directed: true + graph: + disease: "Waldenstr\xF6m macroglobulinemia" + disease_mesh: MESH:D008258 + drug: ibrutinib + drug_mesh: MESH:C551803 + drugbank: DB:DB09053 + links: + - key: negatively regulates + source: MESH:C551803 + target: UniProt:Q06187 + - key: positively regulates + source: UniProt:Q06187 + target: GO:0050853 + - key: positively regulates + source: GO:0050853 + target: GO:0002368 + - key: negatively correlated with + source: GO:0050853 + target: GO:0006915 + - key: positively correlated with + source: GO:0050853 + target: GO:0060326 + - key: positively correlated with + source: GO:0060326 + target: MESH:D008258 + - key: positively correlated with + source: GO:0002368 + target: MESH:D008258 + - key: negatively correlated with + source: GO:0006915 + target: MESH:D008258 + multigraph: true + nodes: + - id: MESH:C551803 + label: Drug + name: ibrutinib + - id: UniProt:Q06187 + label: Protein + name: Tyrosine-protein kinase BTK + - id: GO:0050853 + label: BiologicalProcess + name: B cell receptor signaling pathway + - id: GO:0002368 + label: BiologicalProcess + name: B cell cytokine production + - id: GO:0060326 + label: BiologicalProcess + name: cell chemotaxis + - id: GO:0006915 + label: BiologicalProcess + name: apoptotic process + - id: MESH:D008258 + label: Disease + name: "Waldenstr\xF6m macroglobulinemia" + reference: https://go.drugbank.com/drugs/DB09053#mechanism-of-action https://en.wikipedia.org/wiki/Ibrutinib#Mechanism + https://en.wikipedia.org/wiki/Ibrutinib#Medical_uses https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4632638/ +- directed: true + graph: + disease: Mantle cell lymphoma + disease_mesh: MESH:D020522 + drug: ibrutinib + drug_mesh: MESH:C551803 + drugbank: DB:DB09053 + links: + - key: negatively regulates + source: MESH:C551803 + target: UniProt:Q06187 + - key: positively regulates + source: UniProt:Q06187 + target: GO:0050853 + - key: positively regulates + source: GO:0050853 + target: GO:0002368 + - key: negatively correlated with + source: GO:0050853 + target: GO:0006915 + - key: positively correlated with + source: GO:0050853 + target: GO:0060326 + - key: positively correlated with + source: GO:0060326 + target: MESH:D020522 + - key: positively correlated with + source: GO:0002368 + target: MESH:D020522 + - key: negatively correlated with + source: GO:0006915 + target: MESH:D020522 + multigraph: true + nodes: + - id: MESH:C551803 + label: Drug + name: ibrutinib + - id: UniProt:Q06187 + label: Protein + name: Tyrosine-protein kinase BTK + - id: GO:0050853 + label: BiologicalProcess + name: B cell receptor signaling pathway + - id: GO:0002368 + label: BiologicalProcess + name: B cell cytokine production + - id: GO:0060326 + label: BiologicalProcess + name: cell chemotaxis + - id: GO:0006915 + label: BiologicalProcess + name: apoptotic process + - id: MESH:D020522 + label: Disease + name: Mantle cell lymphoma + reference: https://go.drugbank.com/drugs/DB09053#mechanism-of-action https://en.wikipedia.org/wiki/Ibrutinib#Mechanism + https://en.wikipedia.org/wiki/Ibrutinib#Medical_uses https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4632638/ +- directed: true + graph: + disease: Parkinson's disease + disease_mesh: MESH:D010300 + drug: selegiline + drug_mesh: MESH:D012642 + drugbank: DB:DB01037 + links: + - key: negatively regulates + source: MESH:D012642 + target: UniProt:P27338 + - key: negatively regulates + source: MESH:D012642 + target: UniProt:P21397 + - key: positively regulates + source: UniProt:P27338 + target: GO:0042420 + - key: positively regulates + source: UniProt:P21397 + target: GO:0042420 + - key: decreases abundance of + source: GO:0042420 + target: MESH:D004298 + - key: positively correlated with + source: MESH:D004298 + target: GO:0001963 + - key: negatively correlated with + source: GO:0001963 + target: MESH:D010300 + multigraph: true + nodes: + - id: MESH:D012642 + label: Drug + name: selegiline + - id: UniProt:P21397 + label: Protein + name: Amine oxidase [flavin-containing] A + - id: UniProt:P27338 + label: Protein + name: Amine oxidase [flavin-containing] B + - id: MESH:D004298 + label: ChemicalSubstance + name: Dopamine + - id: GO:0042420 + label: BiologicalProcess + name: dopamine catabolic process + - id: GO:0001963 + label: BiologicalProcess + name: synaptic transmission, dopaminergic + - id: MESH:D010300 + label: Disease + name: Parkinson's disease + reference: https://go.drugbank.com/drugs/DB01037#mechanism-of-action https://en.wikipedia.org/wiki/Monoamine_oxidase_inhibitor#Mechanism_of_action +- directed: true + graph: + disease: Major depressive disorder + disease_mesh: MESH:D003865 + drug: selegiline + drug_mesh: MESH:D012642 + drugbank: DB:DB01037 + links: + - key: negatively regulates + source: MESH:D012642 + target: UniProt:P27338 + - key: negatively regulates + source: MESH:D012642 + target: UniProt:P21397 + - key: positively regulates + source: UniProt:P27338 + target: GO:0042402 + - key: positively regulates + source: UniProt:P21397 + target: GO:0042402 + - key: decreases abundance of + source: GO:0042402 + target: MESH:D012701 + - key: decreases abundance of + source: GO:0042402 + target: MESH:D009638 + - key: positively correlated with + source: MESH:D012701 + target: GO:0099153 + - key: positively correlated with + source: MESH:D009638 + target: GO:0099155 + - key: negatively correlated with + source: GO:0099153 + target: MESH:D003865 + - key: negatively correlated with + source: GO:0099155 + target: MESH:D003865 + multigraph: true + nodes: + - id: MESH:D012642 + label: Drug + name: selegiline + - id: UniProt:P21397 + label: Protein + name: Amine oxidase [flavin-containing] A + - id: UniProt:P27338 + label: Protein + name: Amine oxidase [flavin-containing] B + - id: GO:0042402 + label: BiologicalProcess + name: cellular biogenic amine catabolic process + - id: MESH:D009638 + label: ChemicalSubstance + name: Norepinephrine + - id: MESH:D012701 + label: ChemicalSubstance + name: Serotonin + - id: GO:0099153 + label: BiologicalProcess + name: synaptic transmission, serotonergic + - id: GO:0099155 + label: BiologicalProcess + name: synaptic transmission, noradrenergic + - id: MESH:D003865 + label: Disease + name: Major depressive disorder + reference: https://go.drugbank.com/drugs/DB01037#mechanism-of-action +- directed: true + graph: + disease: Diabetes mellitus type 2 + disease_mesh: MESH:D003924 + drug: sitagliptin + drug_mesh: MESH:D000068900 + drugbank: DB:DB01261 + links: + - key: negatively regulates + source: MESH:D000068900 + target: UniProt:P27487 + - key: participates in + source: UniProt:P27487 + target: REACT:R-HSA-381771 + - key: participates in + source: UniProt:P27487 + target: REACT:R-HSA-400511 + - key: negatively correlated with + source: REACT:R-HSA-381771 + target: MESH:D000078790 + - key: negatively correlated with + source: REACT:R-HSA-400511 + target: MESH:D000078790 + - key: positively correlated with + source: REACT:R-HSA-381771 + target: GO:0070091 + - key: positively correlated with + source: REACT:R-HSA-400511 + target: GO:0070091 + - key: positively correlated with + source: GO:0070091 + target: MESH:D003924 + - key: negatively correlated with + source: MESH:D000078790 + target: MESH:D003924 + multigraph: true + nodes: + - id: MESH:D000068900 + label: Drug + name: sitagliptin + - id: UniProt:P27487 + label: Protein + name: Dipeptidyl peptidase 4 + - id: REACT:R-HSA-381771 + label: Pathway + name: Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1) + - id: REACT:R-HSA-400511 + label: Pathway + name: Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic + Polypeptide (GIP) + - id: MESH:D000078790 + label: BiologicalProcess + name: Insulin Secretion + - id: GO:0070091 + label: BiologicalProcess + name: glucagon secretion + - id: MESH:D003924 + label: Disease + name: Diabetes mellitus type 2 + reference: https://go.drugbank.com/drugs/DB01261#mechanism-of-action https://en.wikipedia.org/wiki/Sitagliptin + https://en.wikipedia.org/wiki/Dipeptidyl_peptidase-4_inhibitor https://en.wikipedia.org/wiki/Incretin#Medical_uses + https://en.wikipedia.org/wiki/Type_2_diabetes#Pathophysiology +- directed: true + graph: + disease: Pulmonary arterial hypertension + disease_mesh: MESH:D000081029 + drug: beraprost + drug_mesh: MESH:C048081 + drugbank: DB:DB05229 + links: + - key: increases activity of + source: MESH:C048081 + target: UniProt:P43119 + - key: positively regulates + source: UniProt:P43119 + target: GO:0007204 + - key: negatively correlated with + source: GO:0007204 + target: GO:0044557 + - key: negatively correlated with + source: GO:0007204 + target: GO:0042311 + - key: negatively correlated with + source: GO:0042311 + target: MESH:D000081029 + - key: negatively correlated with + source: GO:0044557 + target: MESH:D000081029 + multigraph: true + nodes: + - id: MESH:C048081 + label: Drug + name: beraprost + - id: UniProt:P43119 + label: Protein + name: Prostacyclin receptor + - id: GO:0007204 + label: BiologicalProcess + name: positive regulation of cytosolic calcium ion concentration + - id: GO:0044557 + label: BiologicalProcess + name: relaxation of smooth muscle + - id: GO:0042311 + label: BiologicalProcess + name: vasodilation + - id: MESH:D000081029 + label: Disease + name: Pulmonary arterial hypertension + reference: https://go.drugbank.com/drugs/DB05229#mechanism-of-action https://en.wikipedia.org/wiki/Beraprost +- directed: true + graph: + disease: Liposarcoma + disease_mesh: MESH:D008080 + drug: eribulin + drug_mesh: MESH:C490954 + drugbank: DB:DB08871 + links: + - key: negatively regulates + source: MESH:C490954 + target: PR:000028799 + - key: positively regulates + source: PR:000028799 + target: GO:0000278 + - key: positively regulates + source: PR:000028799 + target: GO:0051225 + - key: negatively correlated with + source: GO:0000278 + target: GO:0006915 + - key: negatively correlated with + source: GO:0051225 + target: GO:0006915 + - key: positively correlated with + source: GO:0006915 + target: MESH:D008080 + multigraph: true + nodes: + - id: MESH:C490954 + label: Drug + name: eribulin + - id: PR:000028799 + label: MacromolecularComplex + name: Tubulin + - id: GO:0000278 + label: BiologicalProcess + name: mitotic cell cycle + - id: GO:0051225 + label: BiologicalProcess + name: spindle assembly + - id: GO:0006915 + label: BiologicalProcess + name: apoptotic process + - id: MESH:D008080 + label: Disease + name: Liposarcoma + reference: https://alpha.targetvalidation.org/drug/CHEMBL1683590 https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL1683590/ + https://en.wikipedia.org/wiki/Eribulin#Structure_and_mechanism https://en.wikipedia.org/wiki/Microtubule#Tubulin-binding_drugs_and_chemical_effects + https://go.drugbank.com/drugs/DB08871#mechanism-of-action +- comments: The reviewed (SwissProt) entry is Q05940 (supersedes entry available + on DrugBank i.e.Q99870. The Ensembl gene ID is ENSG00000165646) + directed: true + graph: + disease: Tardive dyskinesia + disease_mesh: MESH:D000071057 + drug: valbenazine + drug_mesh: MESH:C000603978 + drugbank: DB:DB11915 + links: + - key: decreases activity of + source: MESH:C000603978 + target: UniProt:Q05940 + - key: positively regulates + source: UniProt:Q05940 + target: GO:0015842 + - key: positively correlated with + source: GO:0015842 + target: REACT:R-HSA-212676 + - key: positively correlated with + source: REACT:R-HSA-212676 + target: MESH:D000071057 + multigraph: true + nodes: + - id: MESH:C000603978 + label: Drug + name: valbenazine + - id: UniProt:Q05940 + label: Protein + name: Synaptic vesicular amine transporter + - id: GO:0015842 + label: BiologicalProcess + name: aminergic neurotransmitter loading into synaptic vesicle + - id: REACT:R-HSA-212676 + label: Pathway + name: Dopamine Neurotransmitter Release Cycle + - id: MESH:D000071057 + label: Disease + name: Tardive dyskinesia + reference: https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL2364639/ https://go.drugbank.com/drugs/DB11915#mechanism-of-action + https://en.wikipedia.org/wiki/Valbenazine#Mechanism_of_action +- directed: true + graph: + disease: Chronic myeloid leukemia + disease_mesh: MESH:D015464 + drug: Radotinib + drug_mesh: MESH:C000606751 + drugbank: DB:DB12323 + links: + - key: decreases activity of + source: MESH:C000606751 + target: UniProt:P00519 + - key: decreases activity of + source: MESH:C000606751 + target: MESH:D016044 + - key: decreases activity of + source: MESH:C000606751 + target: MESH:D017479 + - key: positively regulates + source: UniProt:P00519 + target: GO:0004713 + - key: positively regulates + source: MESH:D016044 + target: GO:0004713 + - key: positively regulates + source: MESH:D017479 + target: GO:0004713 + - key: positively correlated with + source: UniProt:P00519 + target: GO:0035791 + - key: positively correlated with + source: MESH:D016044 + target: GO:0035791 + - key: positively correlated with + source: MESH:D017479 + target: GO:0048008 + - key: positively correlated with + source: GO:0035791 + target: GO:0008283 + - key: positively correlated with + source: GO:0048008 + target: GO:0008283 + - key: positively correlated with + source: GO:0004713 + target: GO:0008283 + - key: positively correlated with + source: GO:0035791 + target: GO:0008283 + - key: positively correlated with + source: GO:0048008 + target: GO:0008283 + - key: positively correlated with + source: GO:0004713 + target: GO:0008283 + - key: positively correlated with + source: GO:0035791 + target: GO:0001525 + - key: positively correlated with + source: GO:0048008 + target: GO:0001525 + - key: positively correlated with + source: GO:0004713 + target: GO:0001525 + - key: positively correlated with + source: GO:0001525 + target: MESH:D015464 + - key: positively correlated with + source: GO:0008283 + target: MESH:D015464 + multigraph: true + nodes: + - id: MESH:C000606751 + label: Drug + name: Radotinib + - id: UniProt:P00519 + label: Protein + name: Tyrosine-protein kinase ABL1 + - id: MESH:D016044 + label: Protein + name: Fusion Proteins, bcr-abl + - id: MESH:D017479 + label: GeneFamily + name: Receptors, Platelet-Derived Growth Factor + - id: GO:0004713 + label: MolecularActivity + name: protein tyrosine kinase activity + - id: GO:0035791 + label: BiologicalProcess + name: platelet-derived growth factor receptor-beta signaling pathway + - id: GO:0008283 + label: BiologicalProcess + name: cell population proliferation + - id: GO:0048008 + label: BiologicalProcess + name: platelet-derived growth factor receptor signaling pathway + - id: GO:0001525 + label: BiologicalProcess + name: angiogenesis + - id: MESH:D015464 + label: Disease + name: Chronic myeloid leukemia + reference: https://go.drugbank.com/drugs/DB12323#mechanism-of-action https://en.wikipedia.org/wiki/Radotinib + https://drugcentral.org/drugcard/5188 +- comments: note that this drug is only associated with calcium channel blockers + in ChEMBL (https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL1008/), + not with potassium channel blockers (or other targets) as DrugBank has it. + This drug is no longer sold in the United States. It's been implicated in + causing ventricular arrhythmia. + directed: true + graph: + disease: Angina pectoris + disease_mesh: MESH:D000787 + drug: bepridil + drug_mesh: MESH:D015764 + drugbank: DB:DB01244 + links: + - key: negatively regulates + source: MESH:D015764 + target: UniProt:P51787 + - key: negatively regulates + source: MESH:D015764 + target: UniProt:Q12809 + - key: participates in + source: UniProt:P51787 + target: REACT:R-HSA-1296072 + - key: participates in + source: UniProt:P51787 + target: REACT:R-HSA-5576890 + - key: participates in + source: UniProt:Q12809 + target: REACT:R-HSA-1296072 + - key: participates in + source: UniProt:Q12809 + target: REACT:R-HSA-5576890 + - key: positively correlated with + source: REACT:R-HSA-1296072 + target: GO:0086013 + - key: positively correlated with + source: REACT:R-HSA-5576890 + target: GO:0086013 + - key: negatively correlated with + source: GO:0086013 + target: HP:0001657 + - key: positively correlated with + source: HP:0001657 + target: HP:0004308 + - key: positively correlated with + source: HP:0004308 + target: MESH:D017202 + - key: positively correlated with + source: MESH:D017202 + target: MESH:D000787 + multigraph: true + nodes: + - id: MESH:D015764 + label: Drug + name: bepridil + - id: UniProt:P51787 + label: Protein + name: Potassium voltage-gated channel subfamily KQT member 1 + - id: UniProt:Q12809 + label: Protein + name: Potassium voltage-gated channel subfamily H member 2 + - id: REACT:R-HSA-5576890 + label: Pathway + name: Phase 3 - rapid repolarisation + - id: REACT:R-HSA-1296072 + label: Pathway + name: Voltage gated Potassium channels + - id: GO:0086013 + label: BiologicalProcess + name: membrane repolarization during cardiac muscle cell action potential + - id: HP:0001657 + label: PhenotypicFeature + name: Prolonged QT interval + - id: HP:0004308 + label: PhenotypicFeature + name: Ventricular arrhythmia + - id: MESH:D017202 + label: PhenotypicFeature + name: Myocardial Ischemia + - id: MESH:D000787 + label: Disease + name: Angina pectoris + reference: https://go.drugbank.com/drugs/DB01244#mechanism-of-action https://www.cvpharmacology.com/antiarrhy/potassium-blockers + https://pubmed.ncbi.nlm.nih.gov/1280569/ +- comments: note that this drug is only associated with calcium channel blockers + in ChEMBL (https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL1008/), + not with potassium channel blockers (or other targets) as DrugBank has it. + This drug is no longer sold in the United States. It's been implicated in + causing ventricular arrhythmia. + directed: true + graph: + disease: Angina pectoris + disease_mesh: MESH:D000787 + drug: bepridil + drug_mesh: MESH:D015764 + drugbank: DB:DB01244 + links: + - key: decreases activity of + source: MESH:D015764 + target: UniProt:P05023 + - key: positively regulates + source: UniProt:P05023 + target: GO:0036376 + - key: positively correlated with + source: GO:0036376 + target: GO:0070509 + - key: negatively correlated with + source: GO:0070509 + target: MESH:D017202 + - key: positively correlated with + source: MESH:D017202 + target: MESH:D000787 + multigraph: true + nodes: + - id: MESH:D015764 + label: Drug + name: Bepridil + - id: UniProt:P05023 + label: Protein + name: Sodium/potassium-transporting ATPase subunit alpha-1 + - id: GO:0036376 + label: BiologicalProcess + name: sodium ion export across plasma membrane + - id: GO:0070509 + label: BiologicalProcess + name: calcium ion import + - id: MESH:D017202 + label: PhenotypicFeature + name: Myocardial Ischemia + - id: MESH:D000787 + label: Disease + name: Angina pectoris + references: https://go.drugbank.com/drugs/DB01244#BE0000732 https://www.ahajournals.org/doi/full/10.1161/01.STR.29.3.705 +- comments: note that this drug is only associated with calcium channel blockers + in ChEMBL (https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL1008/), + not with potassium channel blockers (or other targets) as DrugBank has it. + This drug is no longer sold in the United States. It's been implicated in + causing ventricular arrhythmia. + directed: true + graph: + disease: Angina pectoris + disease_mesh: MESH:D000787 + drug: bepridil + drug_mesh: MESH:D015764 + drugbank: DB:DB01244 + links: + - key: negatively regulates + source: MESH:D015764 + target: UniProt:O00555 + - key: positively correlated with + source: UniProt:O00555 + target: GO:0070509 + - key: negatively correlated with + source: GO:0070509 + target: GO:0042311 + - key: positively regulates + source: GO:0070509 + target: GO:0002027 + - key: positively regulates + source: GO:0070509 + target: GO:1903779 + - key: negatively correlated with + source: GO:0042311 + target: MESH:D017202 + - key: negatively correlated with + source: GO:0002027 + target: MESH:D017202 + - key: negatively correlated with + source: GO:1903779 + target: MESH:D017202 + - key: positively correlated with + source: MESH:D017202 + target: MESH:D000787 + multigraph: true + nodes: + - id: MESH:D015764 + label: Drug + name: Bepridil + - id: UniProt:O00555 + label: Protein + name: Voltage-dependent P/Q-type calcium channel subunit alpha-1A + - id: GO:0070509 + label: BiologicalProcess + name: calcium ion import + - id: GO:0042311 + label: BiologicalProcess + name: vasodilation + - id: GO:0002027 + label: BiologicalProcess + name: regulation of heart rate + - id: GO:1903779 + label: BiologicalProcess + name: regulation of cardiac conduction + - id: MESH:D017202 + label: PhenotypicFeature + name: Myocardial Ischemia + - id: MESH:D000787 + label: Disease + name: Angina pectoris + reference: https://go.drugbank.com/drugs/DB01244#BE0000356 https://en.wikipedia.org/wiki/Calcium_channel_blocker#Mechanism_of_action + https://en.wikipedia.org/wiki/Bepridil https://www.cvpharmacology.com/vasodilator/CCB +- comments: note that this drug is only associated with calcium channel blockers + in ChEMBL (https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL1008/), + not with potassium channel blockers (or other targets) as DrugBank has it. + This drug is no longer sold in the United States. It's been implicated in + causing ventricular arrhythmia. + directed: true + graph: + disease: Angina pectoris + disease_mesh: MESH:D000787 + drug: bepridil + drug_mesh: MESH:D015764 + drugbank: DB:DB01244 + links: + - key: negatively regulates + source: MESH:D015764 + target: UniProt:O95180 + - key: positively correlated with + source: UniProt:O95180 + target: GO:0070509 + - key: positively correlated with + source: UniProt:O95180 + target: GO:0086046 + - key: positively regulates + source: GO:0070509 + target: GO:0002027 + - key: positively regulates + source: GO:0086046 + target: GO:0002027 + - key: negatively correlated with + source: GO:0002027 + target: MESH:D017202 + - key: positively correlated with + source: MESH:D017202 + target: MESH:D000787 + multigraph: true + nodes: + - id: MESH:D015764 + label: Drug + name: Bepridil + - id: UniProt:O95180 + label: Protein + name: Voltage-dependent T-type calcium channel subunit alpha-1H + - id: GO:0070509 + label: BiologicalProcess + name: calcium ion import + - id: GO:0086046 + label: BiologicalProcess + name: membrane depolarization during SA node cell action potential + - id: GO:0002027 + label: BiologicalProcess + name: regulation of heart rate + - id: MESH:D017202 + label: PhenotypicFeature + name: Myocardial Ischemia + - id: MESH:D000787 + label: Disease + name: Angina pectoris + reference: https://go.drugbank.com/drugs/DB01244#BE0000864 https://en.wikipedia.org/wiki/T-type_calcium_channel + https://www.cvpharmacology.com/vasodilator/CCB +- comments: note that this drug is only associated with calcium channel blockers + in ChEMBL (https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL1008/), + not with potassium channel blockers (or other targets) as DrugBank has it. + This drug is no longer sold in the United States. It's been implicated in + causing ventricular arrhythmia. + directed: true + graph: + disease: Angina pectoris + disease_mesh: MESH:D000787 + drug: bepridil + drug_mesh: MESH:D015764 + drugbank: DB:DB01244 + links: + - key: negatively regulates + source: MESH:D015764 + target: UniProt:Q9NY47 + - key: positively regulates + source: UniProt:Q9NY47 + target: GO:1903779 + - key: positively correlated with + source: GO:1903779 + target: GO:0002027 + - key: negatively correlated with + source: GO:0002027 + target: MESH:D017202 + - key: positively correlated with + source: MESH:D017202 + target: MESH:D000787 + multigraph: true + nodes: + - id: MESH:D015764 + label: Drug + name: Bepridil + - id: UniProt:Q9NY47 + label: Protein + name: Voltage-dependent calcium channel subunit alpha-2/delta-2 + - id: GO:1903779 + label: BiologicalProcess + name: regulation of cardiac conduction + - id: GO:0002027 + label: BiologicalProcess + name: regulation of heart rate + - id: MESH:D017202 + label: PhenotypicFeature + name: Myocardial Ischemia + - id: MESH:D000787 + label: Disease + name: Angina pectoris + reference: https://go.drugbank.com/drugs/DB01244#BE0002396 https://en.wikipedia.org/wiki/T-type_calcium_channel + https://www.cvpharmacology.com/vasodilator/CCB https://en.wikipedia.org/wiki/Voltage-gated_calcium_channel#%CE%B12%CE%B4_Subunit +- directed: true + graph: + disease: Angina pectoris + disease_mesh: MESH:D000787 + drug: bepridil + drug_mesh: MESH:D015764 + drugbank: DB:DB01244 + links: + - key: positively regulates + source: MESH:D015764 + target: UniProt:P63316 + - key: positively regulates + source: UniProt:P63316 + target: GO:0055117 + - key: negatively correlated with + source: GO:0055117 + target: MESH:D017202 + - key: positively correlated with + source: MESH:D017202 + target: MESH:D000787 + multigraph: true + nodes: + - id: MESH:D015764 + label: Drug + name: Bepridil + - id: UniProt:P63316 + label: Protein + name: Troponin C, slow skeletal and cardiac muscles + - id: GO:0055117 + label: BiologicalProcess + name: regulation of cardiac muscle contraction + - id: MESH:D017202 + label: PhenotypicFeature + name: Myocardial Ischemia + - id: MESH:D000787 + label: Disease + name: Angina pectoris + reference: https://go.drugbank.com/drugs/DB01244#BE0001024 https://en.wikipedia.org/wiki/Troponin_C_type_1#Troponin-binding_drugs +- directed: true + graph: + disease: Angina pectoris + disease_mesh: MESH:D000787 + drug: bepridil + drug_mesh: MESH:D015764 + drugbank: DB:DB01244 + links: + - key: negatively regulates + source: MESH:D015764 + target: UniProt:P0DP23 + - key: positively regulates + source: UniProt:P0DP23 + target: GO:0055117 + - key: negatively correlated with + source: GO:0055117 + target: MESH:D017202 + - key: positively correlated with + source: MESH:D017202 + target: MESH:D000787 + multigraph: true + nodes: + - id: MESH:D015764 + label: Drug + name: Bepridil + - id: UniProt:P0DP23 + label: Protein + name: Calmodulin-1 + - id: GO:0055117 + label: BiologicalProcess + name: regulation of cardiac muscle contraction + - id: MESH:D017202 + label: PhenotypicFeature + name: Myocardial Ischemia + - id: MESH:D000787 + label: Disease + name: Angina pectoris + reference: https://go.drugbank.com/drugs/DB01244#BE0001024 +- comments: This drug does not interact directly with the catalytic site of PDE1 + but interact at the level of calmodulin binding sites (https://en.wikipedia.org/wiki/PDE1#Inhibitors_and_their_function) + directed: true + graph: + disease: Angina pectoris + disease_mesh: MESH:D000787 + drug: bepridil + drug_mesh: MESH:D015764 + drugbank: DB:DB01244 + links: + - key: negatively regulates + source: MESH:D015764 + target: UniProt:Q01064 + - key: negatively regulates + source: MESH:D015764 + target: UniProt:P54750 + - key: molecularly interacts with + source: UniProt:Q01064 + target: MESH:D002147 + - key: molecularly interacts with + source: UniProt:P54750 + target: MESH:D002147 + - key: positively correlated with + source: MESH:D002147 + target: GO:0055117 + - key: negatively correlated with + source: GO:0055117 + target: MESH:D017202 + - key: positively correlated with + source: MESH:D017202 + target: MESH:D000787 + multigraph: true + nodes: + - id: MESH:D015764 + label: Drug + name: Bepridil + - id: UniProt:P54750 + label: Protein + name: Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase + 1A + - id: UniProt:Q01064 + label: Protein + name: Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase + 1B + - id: MESH:D002147 + label: Protein + name: Calmodulin + - id: GO:0055117 + label: BiologicalProcess + name: regulation of cardiac muscle contraction + - id: MESH:D017202 + label: PhenotypicFeature + name: Myocardial Ischemia + - id: MESH:D000787 + label: Disease + name: Angina pectoris + reference: https://go.drugbank.com/drugs/DB01244#BE0003323 https://go.drugbank.com/drugs/DB01244#BE0003565 +- directed: true + graph: + disease: Lactose intolerance + disease_mesh: MESH:D007787 + drug: Tilactase + drug_mesh: null + drugbank: DB:DB13761 + links: + - key: increases degradation of + source: DB:DB13761 + target: CHEBI:17716 + - key: has metabolite + source: CHEBI:17716 + target: CHEBI:28061 + - key: has metabolite + source: CHEBI:17716 + target: CHEBI:4167 + - key: positively correlated with + source: CHEBI:28061 + target: GO:0050892 + - key: positively correlated with + source: CHEBI:4167 + target: GO:0050892 + - key: disrupted by + source: GO:0050892 + target: MESH:D007787 + multigraph: true + nodes: + - id: DB:DB13761 + label: Drug + name: Tilactase + - id: CHEBI:17716 + label: ChemicalSubstance + name: Lactose + - id: CHEBI:4167 + label: ChemicalSubstance + name: D-glucopyranose + - id: CHEBI:28061 + label: ChemicalSubstance + name: "\u03B1-D-galactose" + - id: GO:0050892 + label: BiologicalProcess + name: intestinal absorption + - id: MESH:D007787 + label: Disease + name: Lactose intolerance + reference: https://go.drugbank.com/drugs/DB13761#mechanism-of-action diff --git a/requirements.txt b/requirements.txt index 5b3313116..7296e6a44 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,5 +1,6 @@ pytest pandas +pyyaml xlsxwriter xlrd==1.2.0 simplejson diff --git a/utils/build_indications.py b/utils/build_indications.py index a16ad61c2..030aae3cd 100644 --- a/utils/build_indications.py +++ b/utils/build_indications.py @@ -6,8 +6,11 @@ from itertools import chain from collections import defaultdict -from test_indications import PathTester, ALLOWED_CURIS, BL_NODES, BL_PREDS - +# Multiple imports depending on if command line or import from script +try: + from test_indications import PathTester, ALLOWED_CURIS, BL_NODES, BL_PREDS +except ModuleNotFoundError: + from utils.test_indications import PathTester, ALLOWED_CURIS, BL_NODES, BL_PREDS # Define some globals for use in this script bl_map = pd.read_csv('utils/dmdb_to_bl_map.csv')